Wall clock time and date at job start Mon Mar 30 2020 02:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46450 * 2 1 4 4 C 1.52998 * 109.47276 * 240.00617 * 2 1 3 5 5 C 1.52994 * 109.47205 * 299.99440 * 4 2 1 6 6 C 1.53003 * 109.47208 * 300.00198 * 5 4 2 7 7 C 1.53008 * 109.47223 * 59.99813 * 6 5 4 8 8 O 1.42903 * 109.46685 * 59.99671 * 7 6 5 9 9 C 1.50696 * 109.47182 * 180.02562 * 7 6 5 10 10 H 1.08003 * 119.99770 * 119.99806 * 9 7 6 11 11 C 1.37878 * 120.00039 * 299.99738 * 9 7 6 12 12 N 1.31511 * 119.99830 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 119.99809 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47214 * 60.00251 * 13 11 9 15 15 H 1.48500 * 109.46808 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47179 * 299.99808 * 13 11 9 17 17 C 1.52999 * 109.47545 * 120.00072 * 2 1 3 18 18 H 1.08993 * 109.47285 * 180.02562 * 17 2 1 19 19 C 1.53008 * 109.46972 * 300.00743 * 17 2 1 20 20 H 1.09007 * 109.46306 * 169.57360 * 1 2 3 21 21 H 1.09001 * 109.47328 * 289.56832 * 1 2 3 22 22 H 1.08988 * 109.47504 * 49.57834 * 1 2 3 23 23 H 1.09004 * 109.47069 * 179.97438 * 4 2 1 24 24 H 1.09000 * 109.46970 * 59.99808 * 4 2 1 25 25 H 1.08996 * 109.47711 * 180.02562 * 5 4 2 26 26 H 1.09004 * 109.46988 * 60.00096 * 5 4 2 27 27 H 1.09001 * 109.47345 * 300.00285 * 6 5 4 28 28 H 1.08995 * 109.47131 * 179.97438 * 6 5 4 29 29 H 0.96701 * 113.99653 * 60.01264 * 8 7 6 30 30 H 0.96998 * 120.00079 * 180.02562 * 12 11 9 31 31 H 1.08996 * 109.46776 * 179.97438 * 19 17 2 32 32 H 1.09005 * 109.46855 * 299.99420 * 19 17 2 33 33 H 1.09001 * 109.46890 * 59.99658 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.5302 -2.1636 -1.2494 6 6 2.0403 -2.8849 -0.0002 7 6 1.5302 -2.1638 1.2492 8 8 0.1012 -2.1639 1.2491 9 6 2.0331 -2.8739 2.4795 10 1 2.6540 -2.3486 3.1903 11 6 1.7006 -4.1940 2.6979 12 7 0.9450 -4.8336 1.8322 13 14 2.3234 -5.0739 4.2234 14 1 1.8278 -4.3739 5.4357 15 1 1.8296 -6.4744 4.2233 16 1 3.8084 -5.0733 4.2237 17 6 2.0401 -0.7212 1.2492 18 1 3.1301 -0.7208 1.2494 19 6 1.5300 -0.0001 2.4985 20 1 -0.3632 -1.0108 -0.1860 21 1 -0.3634 0.3442 0.9683 22 1 -0.3634 0.6663 -0.7822 23 1 3.1301 -0.7207 -1.2495 24 1 1.6767 -0.2072 -2.1392 25 1 1.8939 -2.6775 -2.1391 26 1 0.4402 -2.1637 -1.2494 27 1 3.1303 -2.8848 -0.0001 28 1 1.6767 -3.9124 -0.0001 29 1 -0.2920 -3.0473 1.2491 30 1 0.7107 -5.7622 1.9860 31 1 1.8930 -0.5142 3.3884 32 1 1.8933 1.0277 2.4986 33 1 0.4400 -0.0002 2.4984 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879280.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:08 Heat of formation + Delta-G solvation = -87.561580 kcal Electronic energy + Delta-G solvation = -14108.120373 eV Core-core repulsion = 11939.255360 eV Total energy + Delta-G solvation = -2168.865013 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.55141 -36.01823 -34.00570 -33.43104 -31.52458 -27.95067 -27.03094 -25.92039 -22.35655 -21.79620 -19.17347 -18.78138 -16.95443 -16.44078 -15.92116 -15.26012 -14.98484 -14.63718 -14.04202 -13.74369 -13.69491 -12.87779 -12.81610 -12.78973 -12.65970 -12.39251 -12.14778 -12.00393 -11.83753 -11.62042 -11.24253 -11.03754 -10.90833 -10.49956 -10.23335 -9.64487 -8.06370 -6.24022 1.40522 1.42016 1.48549 2.42541 3.12579 4.04864 4.09271 4.15790 4.45025 4.54317 4.64975 4.78551 4.86408 4.90336 4.96297 5.06555 5.12359 5.17745 5.23181 5.38994 5.42225 5.47351 5.57830 5.61472 5.67893 5.78152 5.99014 6.04170 6.25003 6.36589 6.81775 7.46201 7.66330 8.91216 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046865 B = 0.014053 C = 0.012630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.322783 B = 1991.940563 C = 2216.367690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 H 0.068 0.932 4 C -0.106 4.106 5 C -0.112 4.112 6 C -0.134 4.134 7 C 0.254 3.746 8 O -0.574 6.574 9 C -0.551 4.551 10 H 0.047 0.953 11 C 0.029 3.971 12 N -0.911 5.911 13 Si 0.946 3.054 14 H -0.278 1.278 15 H -0.283 1.283 16 H -0.277 1.277 17 C -0.070 4.070 18 H 0.051 0.949 19 C -0.126 4.126 20 H 0.074 0.926 21 H 0.042 0.958 22 H 0.044 0.956 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.026 0.974 28 H 0.063 0.937 29 H 0.361 0.639 30 H 0.265 0.735 31 H 0.036 0.964 32 H 0.053 0.947 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.730 6.025 -3.796 7.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.099 4.099 3 H 0.086 0.914 4 C -0.143 4.143 5 C -0.149 4.149 6 C -0.172 4.172 7 C 0.215 3.785 8 O -0.381 6.381 9 C -0.590 4.590 10 H 0.065 0.935 11 C -0.171 4.171 12 N -0.553 5.553 13 Si 0.773 3.227 14 H -0.203 1.203 15 H -0.209 1.209 16 H -0.202 1.202 17 C -0.088 4.088 18 H 0.070 0.930 19 C -0.183 4.183 20 H 0.093 0.907 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.210 0.790 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.750 6.507 -3.825 7.585 hybrid contribution 0.378 -1.528 1.028 1.880 sum 1.128 4.979 -2.796 5.821 Atomic orbital electron populations 1.22045 0.94948 1.02874 0.99997 1.21068 0.96720 0.97965 0.94104 0.91399 1.21514 0.99784 0.95413 0.97625 1.21514 1.00594 0.95864 0.96963 1.22048 0.97880 1.01351 0.95928 1.18582 0.78692 0.90579 0.90638 1.86264 1.21983 1.33095 1.96808 1.22109 1.31656 0.96744 1.08466 0.93458 1.25574 0.95009 0.97840 0.98635 1.69693 1.37895 1.11499 1.36170 0.85804 0.78574 0.77583 0.80719 1.20335 1.20868 1.20219 1.21083 0.97819 0.94888 0.95049 0.93010 1.21642 1.01017 0.98292 0.97325 0.90706 0.93876 0.93666 0.92705 0.91013 0.93068 0.92449 0.95522 0.91873 0.79033 0.92587 0.94457 0.92753 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.04 7.70 71.98 0.55 -4.49 16 2 C -0.08 -2.82 2.72 -10.79 -0.03 -2.85 16 3 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 4 C -0.11 -3.52 5.45 30.59 0.17 -3.35 16 5 C -0.11 -4.28 5.59 30.59 0.17 -4.11 16 6 C -0.13 -6.23 4.69 30.60 0.14 -6.09 16 7 C 0.25 12.20 0.35 -11.54 0.00 12.19 16 8 O -0.57 -28.10 8.07 -148.98 -1.20 -29.30 16 9 C -0.55 -29.57 7.52 25.60 0.19 -29.38 16 10 H 0.05 2.57 6.71 -2.91 -0.02 2.55 16 11 C 0.03 1.52 5.22 84.66 0.44 1.96 16 12 N -0.91 -48.99 9.68 21.45 0.21 -48.78 16 13 Si 0.95 43.04 29.54 68.60 2.03 45.06 16 14 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 C -0.07 -2.91 1.95 -10.79 -0.02 -2.93 16 18 H 0.05 2.18 8.14 -2.39 -0.02 2.17 16 19 C -0.13 -5.00 8.47 71.98 0.61 -4.39 16 20 H 0.07 2.98 3.76 -2.38 -0.01 2.97 16 21 H 0.04 1.58 5.94 -2.39 -0.01 1.57 16 22 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.05 1.76 8.14 -2.38 -0.02 1.75 16 24 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.06 2.27 5.96 -2.38 -0.01 2.25 16 27 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 29 H 0.36 18.92 7.15 -74.06 -0.53 18.39 16 30 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 31 H 0.04 1.59 6.62 -2.39 -0.02 1.57 16 32 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.05 2.10 5.76 -2.39 -0.01 2.09 16 Total: -1.00 -54.05 239.67 3.82 -50.22 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.56 Total: 26.24 kcal Atomic # 6 Polarization: -45.67 SS G_CDS: 2.23 Total: -43.45 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.21 Total: -48.78 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -1.20 Total: -29.30 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -54.05 3.82 -50.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879280.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.337 kcal (2) G-P(sol) polarization free energy of solvation -54.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds