Wall clock time and date at job start Mon Mar 30 2020 02:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.46952 * 2 1 4 4 C 1.53002 * 109.46817 * 239.99941 * 2 1 3 5 5 C 1.52997 * 109.46817 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47127 * 60.00361 * 5 4 2 7 7 O 1.42895 * 109.47036 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47239 * 59.99504 * 6 5 4 9 9 H 1.07994 * 120.00496 * 239.99942 * 8 6 5 10 10 C 1.37878 * 119.99687 * 60.00100 * 8 6 5 11 11 N 1.31518 * 120.00216 * 0.02562 * 10 8 6 12 12 Si 1.86797 * 120.00016 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47172 * 0.02562 * 12 10 8 14 14 H 1.48493 * 109.47304 * 120.00302 * 12 10 8 15 15 H 1.48502 * 109.47432 * 240.00422 * 12 10 8 16 16 C 1.52999 * 109.46626 * 299.99539 * 6 5 4 17 17 H 1.08993 * 109.47839 * 299.99931 * 16 6 5 18 18 C 1.53006 * 109.47000 * 180.02562 * 16 6 5 19 19 C 1.52996 * 109.47131 * 120.00306 * 2 1 3 20 20 H 1.09000 * 109.47611 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47289 * 299.99744 * 1 2 3 22 22 H 1.09002 * 109.47153 * 59.99828 * 1 2 3 23 23 H 1.09002 * 109.47070 * 60.00180 * 4 2 1 24 24 H 1.08996 * 109.47407 * 299.99780 * 4 2 1 25 25 H 1.09001 * 109.47502 * 300.00518 * 5 4 2 26 26 H 1.09001 * 109.47289 * 180.02562 * 5 4 2 27 27 H 0.96705 * 114.00010 * 299.99562 * 7 6 5 28 28 H 0.96999 * 120.00239 * 180.02562 * 11 10 8 29 29 H 1.09000 * 109.46866 * 60.00185 * 18 16 6 30 30 H 1.09001 * 109.47372 * 180.02562 * 18 16 6 31 31 H 1.09004 * 109.47107 * 300.00294 * 18 16 6 32 32 H 1.09001 * 109.46993 * 300.00131 * 19 2 1 33 33 H 1.09000 * 109.47380 * 59.99237 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5699 -0.7218 -1.2490 6 6 4.0794 -1.4436 0.0003 7 8 5.5083 -1.4436 0.0009 8 6 3.5764 -2.8641 0.0000 9 1 2.9553 -3.2173 0.8098 10 6 3.9094 -3.7130 -1.0342 11 7 4.6663 -3.2832 -2.0201 12 14 3.2866 -5.4741 -1.0343 13 1 2.4612 -5.7074 0.1779 14 1 2.4616 -5.7074 -2.2467 15 1 4.4415 -6.4077 -1.0344 16 6 3.5694 -0.7222 1.2495 17 1 3.9331 0.3052 1.2498 18 6 4.0794 -1.4435 2.4988 19 6 2.0400 -0.7213 1.2492 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.6766 -0.2074 -2.1393 24 1 1.6766 -1.7489 -1.2493 25 1 3.9337 0.3057 -1.2486 26 1 3.9332 -1.2353 -2.1392 27 1 5.9020 -1.8851 -0.7642 28 1 4.9002 -3.8803 -2.7479 29 1 5.1694 -1.4435 2.4988 30 1 3.7157 -0.9299 3.3888 31 1 3.7160 -2.4712 2.4988 32 1 1.6766 -0.2075 2.1392 33 1 1.6765 -1.7489 1.2492 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879292.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:34 Heat of formation + Delta-G solvation = -83.806811 kcal Electronic energy + Delta-G solvation = -13935.139143 eV Core-core repulsion = 11766.436949 eV Total energy + Delta-G solvation = -2168.702194 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.50803 -34.67221 -32.18636 -31.77052 -29.74787 -25.88942 -25.72315 -23.74314 -20.94501 -19.49695 -18.73197 -16.33390 -15.06695 -14.82659 -13.79601 -13.67668 -13.24376 -12.97942 -12.21398 -12.00709 -11.86318 -11.36220 -11.29211 -11.22216 -10.95961 -10.79019 -10.48808 -10.34456 -10.19493 -9.85462 -9.66034 -9.46395 -9.19903 -8.67148 -8.43715 -7.84217 -6.06303 -4.13933 3.25280 3.34491 3.37964 4.38286 5.17520 5.49617 5.56950 5.68284 5.90700 6.13726 6.23639 6.30961 6.35473 6.38025 6.54866 6.63095 6.66772 6.71146 6.80143 6.86975 6.94151 7.06442 7.22319 7.34552 7.38457 7.49516 7.67719 7.77320 8.11585 8.35822 8.86869 9.51950 9.67228 10.96718 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030831 B = 0.016061 C = 0.014217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.965342 B = 1742.906248 C = 1969.061008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.054 0.946 4 C -0.094 4.094 5 C -0.136 4.136 6 C 0.254 3.746 7 O -0.595 6.595 8 C -0.514 4.514 9 H 0.061 0.939 10 C 0.066 3.934 11 N -0.901 5.901 12 Si 0.890 3.110 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.284 1.284 16 C -0.070 4.070 17 H 0.044 0.956 18 C -0.129 4.129 19 C -0.096 4.096 20 H 0.052 0.948 21 H 0.044 0.956 22 H 0.045 0.955 23 H 0.033 0.967 24 H 0.070 0.930 25 H 0.019 0.981 26 H 0.091 0.909 27 H 0.378 0.622 28 H 0.263 0.737 29 H 0.053 0.947 30 H 0.026 0.974 31 H 0.058 0.942 32 H 0.041 0.959 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.757 3.640 2.535 6.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.072 0.928 4 C -0.132 4.132 5 C -0.175 4.175 6 C 0.215 3.785 7 O -0.404 6.404 8 C -0.552 4.552 9 H 0.079 0.921 10 C -0.134 4.134 11 N -0.543 5.543 12 Si 0.718 3.282 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.211 1.211 16 C -0.089 4.089 17 H 0.062 0.938 18 C -0.186 4.186 19 C -0.133 4.133 20 H 0.071 0.929 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.052 0.948 24 H 0.089 0.911 25 H 0.038 0.962 26 H 0.109 0.891 27 H 0.228 0.772 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.778 3.895 2.941 6.830 hybrid contribution -0.280 -1.286 -0.707 1.495 sum -5.058 2.609 2.234 6.114 Atomic orbital electron populations 1.21823 0.96655 1.01317 1.00262 1.21124 0.93990 0.98854 0.96896 0.92770 1.21376 0.97102 1.00378 0.94322 1.22127 0.94254 0.97414 1.03664 1.18595 0.78531 0.92495 0.88868 1.86087 1.22081 1.81414 1.50817 1.21762 1.30682 0.96334 1.06438 0.92081 1.24974 0.94851 0.98479 0.95128 1.69602 1.37869 1.35708 1.11095 0.86564 0.78652 0.85034 0.77901 1.19808 1.21096 1.21059 1.20920 0.94065 0.97708 0.96186 0.93799 1.21636 1.01076 1.00534 0.95375 1.21508 0.95541 1.00811 0.95474 0.92860 0.93699 0.93548 0.94847 0.91099 0.96197 0.89067 0.77174 0.92661 0.92831 0.95521 0.92321 0.94065 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.19 37.16 0.34 -1.87 16 2 C -0.09 -1.66 2.72 -90.62 -0.25 -1.90 16 3 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 4 C -0.09 -1.97 4.98 -26.73 -0.13 -2.11 16 5 C -0.14 -3.23 4.86 -26.73 -0.13 -3.36 16 6 C 0.25 6.27 0.53 -91.77 -0.05 6.22 16 7 O -0.60 -15.72 12.28 -35.23 -0.43 -16.15 16 8 C -0.51 -13.35 5.57 -34.44 -0.19 -13.54 16 9 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 10 C 0.07 1.73 5.22 -17.82 -0.09 1.63 16 11 N -0.90 -24.04 9.69 55.43 0.54 -23.51 16 12 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 13 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 C -0.07 -1.53 2.22 -90.65 -0.20 -1.73 16 17 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 18 C -0.13 -2.67 8.80 37.16 0.33 -2.34 16 19 C -0.10 -1.86 4.26 -26.76 -0.11 -1.97 16 20 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 1.61 7.21 -51.93 -0.37 1.24 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 27 H 0.38 10.18 7.15 45.56 0.33 10.50 16 28 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.05 1.15 7.68 -51.93 -0.40 0.76 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 1.26 6.62 -51.93 -0.34 0.91 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 LS Contribution 249.78 15.07 3.76 3.76 Total: -1.00 -26.47 249.78 -6.33 -32.80 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -4.69 Total: 8.34 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -0.49 Total: -20.98 kcal Atomic # 7 Polarization: -24.04 SS G_CDS: 0.54 Total: -23.51 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.43 Total: -16.15 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -26.47 -6.33 -32.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879292.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.006 kcal (2) G-P(sol) polarization free energy of solvation -26.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds