Wall clock time and date at job start Mon Mar 30 2020 02:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.46952 * 2 1 4 4 C 1.53002 * 109.46817 * 239.99941 * 2 1 3 5 5 C 1.52997 * 109.46817 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47127 * 60.00361 * 5 4 2 7 7 O 1.42895 * 109.47036 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47239 * 59.99504 * 6 5 4 9 9 H 1.07994 * 120.00496 * 239.99942 * 8 6 5 10 10 C 1.37878 * 119.99687 * 60.00100 * 8 6 5 11 11 N 1.31518 * 120.00216 * 0.02562 * 10 8 6 12 12 Si 1.86797 * 120.00016 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47172 * 0.02562 * 12 10 8 14 14 H 1.48493 * 109.47304 * 120.00302 * 12 10 8 15 15 H 1.48502 * 109.47432 * 240.00422 * 12 10 8 16 16 C 1.52999 * 109.46626 * 299.99539 * 6 5 4 17 17 H 1.08993 * 109.47839 * 299.99931 * 16 6 5 18 18 C 1.53006 * 109.47000 * 180.02562 * 16 6 5 19 19 C 1.52996 * 109.47131 * 120.00306 * 2 1 3 20 20 H 1.09000 * 109.47611 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47289 * 299.99744 * 1 2 3 22 22 H 1.09002 * 109.47153 * 59.99828 * 1 2 3 23 23 H 1.09002 * 109.47070 * 60.00180 * 4 2 1 24 24 H 1.08996 * 109.47407 * 299.99780 * 4 2 1 25 25 H 1.09001 * 109.47502 * 300.00518 * 5 4 2 26 26 H 1.09001 * 109.47289 * 180.02562 * 5 4 2 27 27 H 0.96705 * 114.00010 * 299.99562 * 7 6 5 28 28 H 0.96999 * 120.00239 * 180.02562 * 11 10 8 29 29 H 1.09000 * 109.46866 * 60.00185 * 18 16 6 30 30 H 1.09001 * 109.47372 * 180.02562 * 18 16 6 31 31 H 1.09004 * 109.47107 * 300.00294 * 18 16 6 32 32 H 1.09001 * 109.46993 * 300.00131 * 19 2 1 33 33 H 1.09000 * 109.47380 * 59.99237 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5699 -0.7218 -1.2490 6 6 4.0794 -1.4436 0.0003 7 8 5.5083 -1.4436 0.0009 8 6 3.5764 -2.8641 0.0000 9 1 2.9553 -3.2173 0.8098 10 6 3.9094 -3.7130 -1.0342 11 7 4.6663 -3.2832 -2.0201 12 14 3.2866 -5.4741 -1.0343 13 1 2.4612 -5.7074 0.1779 14 1 2.4616 -5.7074 -2.2467 15 1 4.4415 -6.4077 -1.0344 16 6 3.5694 -0.7222 1.2495 17 1 3.9331 0.3052 1.2498 18 6 4.0794 -1.4435 2.4988 19 6 2.0400 -0.7213 1.2492 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.6766 -0.2074 -2.1393 24 1 1.6766 -1.7489 -1.2493 25 1 3.9337 0.3057 -1.2486 26 1 3.9332 -1.2353 -2.1392 27 1 5.9020 -1.8851 -0.7642 28 1 4.9002 -3.8803 -2.7479 29 1 5.1694 -1.4435 2.4988 30 1 3.7157 -0.9299 3.3888 31 1 3.7160 -2.4712 2.4988 32 1 1.6766 -0.2075 2.1392 33 1 1.6765 -1.7489 1.2492 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879292.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:34 Heat of formation + Delta-G solvation = -99.614602 kcal Electronic energy + Delta-G solvation = -13935.824620 eV Core-core repulsion = 11766.436949 eV Total energy + Delta-G solvation = -2169.387671 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.25891 -36.47015 -34.12542 -33.54645 -31.47126 -27.76478 -27.27871 -25.49161 -22.69240 -21.07377 -20.56195 -18.28535 -17.06311 -16.59556 -15.58082 -15.42023 -14.80098 -14.64409 -13.89862 -13.82526 -13.42278 -13.14506 -12.98183 -12.81620 -12.75128 -12.44248 -12.26556 -12.13690 -12.00593 -11.58977 -11.31343 -11.15259 -10.88637 -10.55519 -10.37148 -9.81919 -8.06382 -6.19528 1.38764 1.43499 1.52030 2.43620 3.15091 3.93411 4.06693 4.16634 4.31937 4.59477 4.64063 4.76021 4.86550 4.88085 4.97125 4.98483 5.01954 5.19529 5.20679 5.27298 5.35281 5.44979 5.53933 5.59115 5.64187 5.74967 5.78909 5.90708 6.17245 6.37859 6.84726 7.47653 7.58341 8.94928 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030831 B = 0.016061 C = 0.014217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.965342 B = 1742.906248 C = 1969.061008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.088 4.088 3 H 0.062 0.938 4 C -0.089 4.089 5 C -0.134 4.134 6 C 0.240 3.760 7 O -0.606 6.606 8 C -0.519 4.519 9 H 0.056 0.944 10 C 0.024 3.976 11 N -0.919 5.919 12 Si 0.944 3.056 13 H -0.270 1.270 14 H -0.283 1.283 15 H -0.286 1.286 16 C -0.074 4.074 17 H 0.044 0.956 18 C -0.123 4.123 19 C -0.091 4.091 20 H 0.048 0.952 21 H 0.067 0.933 22 H 0.058 0.942 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.020 0.980 26 H 0.062 0.938 27 H 0.371 0.629 28 H 0.263 0.737 29 H 0.035 0.965 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.300 4.194 3.406 8.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 H 0.081 0.919 4 C -0.127 4.127 5 C -0.172 4.172 6 C 0.202 3.798 7 O -0.414 6.414 8 C -0.557 4.557 9 H 0.074 0.926 10 C -0.174 4.174 11 N -0.561 5.561 12 Si 0.771 3.229 13 H -0.194 1.194 14 H -0.209 1.209 15 H -0.212 1.212 16 C -0.093 4.093 17 H 0.062 0.938 18 C -0.180 4.180 19 C -0.128 4.128 20 H 0.067 0.933 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.039 0.961 26 H 0.081 0.919 27 H 0.220 0.780 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.329 4.455 3.821 8.632 hybrid contribution 0.249 -1.436 -0.985 1.758 sum -6.080 3.020 2.836 7.357 Atomic orbital electron populations 1.21758 0.93975 1.01632 1.02082 1.21104 0.96228 0.98524 0.94773 0.91934 1.21305 0.94950 0.99742 0.96706 1.22036 0.96388 0.96749 1.02040 1.18901 0.77515 0.92624 0.90806 1.86089 1.23530 1.81305 1.50524 1.21888 1.30484 0.97184 1.06161 0.92578 1.25587 0.95237 1.01538 0.95050 1.69710 1.38484 1.36530 1.11380 0.85722 0.78013 0.81298 0.77866 1.19446 1.20869 1.21238 1.20985 0.95958 0.97242 0.95097 0.93766 1.21566 0.99932 1.00108 0.96443 1.21473 0.93478 1.00516 0.97337 0.93314 0.91442 0.92251 0.93456 0.93305 0.96120 0.91920 0.77991 0.92752 0.94558 0.92157 0.93618 0.91074 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.19 71.98 0.66 -3.08 16 2 C -0.09 -3.00 2.72 -10.79 -0.03 -3.03 16 3 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.09 -3.65 4.98 30.59 0.15 -3.50 16 5 C -0.13 -6.36 4.86 30.60 0.15 -6.21 16 6 C 0.24 11.86 0.53 -11.54 -0.01 11.85 16 7 O -0.61 -32.56 12.28 -148.98 -1.83 -34.39 16 8 C -0.52 -27.04 5.57 25.60 0.14 -26.90 16 9 H 0.06 2.93 5.68 -2.91 -0.02 2.92 16 10 C 0.02 1.27 5.22 84.65 0.44 1.71 16 11 N -0.92 -49.81 9.69 21.45 0.21 -49.60 16 12 Si 0.94 42.65 29.54 68.60 2.03 44.67 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 15 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 16 C -0.07 -3.13 2.22 -10.81 -0.02 -3.16 16 17 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 18 C -0.12 -4.93 8.80 71.98 0.63 -4.30 16 19 C -0.09 -3.28 4.26 30.57 0.13 -3.15 16 20 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 23 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.05 2.20 7.21 -2.39 -0.02 2.18 16 25 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 27 H 0.37 20.58 7.15 -74.05 -0.53 20.05 16 28 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 29 H 0.04 1.53 7.68 -2.39 -0.02 1.51 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.04 1.91 6.62 -2.38 -0.02 1.90 16 32 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.05 2.17 6.62 -2.39 -0.02 2.16 16 Total: -1.00 -55.75 249.78 3.20 -52.55 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.55 Total: 26.52 kcal Atomic # 6 Polarization: -42.01 SS G_CDS: 2.25 Total: -39.75 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.21 Total: -49.60 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -1.83 Total: -34.39 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -55.75 3.20 -52.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879292.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.064 kcal (2) G-P(sol) polarization free energy of solvation -55.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds