Wall clock time and date at job start Mon Mar 30 2020 02:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46935 * 2 1 4 4 C 1.53002 * 109.46982 * 240.00267 * 2 1 3 5 5 C 1.53000 * 109.46911 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46806 * 59.99917 * 5 4 2 7 7 O 1.42905 * 109.47208 * 59.99954 * 6 5 4 8 8 C 1.50701 * 109.46958 * 179.97438 * 6 5 4 9 9 H 1.07999 * 119.99742 * 120.00201 * 8 6 5 10 10 C 1.37878 * 120.00001 * 300.00048 * 8 6 5 11 11 N 1.31507 * 120.00096 * 0.02562 * 10 8 6 12 12 Si 1.86805 * 119.99926 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46980 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47152 * 120.00273 * 12 10 8 15 15 H 1.48505 * 109.46882 * 240.00332 * 12 10 8 16 16 C 1.52999 * 109.47628 * 300.00074 * 6 5 4 17 17 H 1.09002 * 109.46716 * 300.00030 * 16 6 5 18 18 C 1.52997 * 109.47317 * 180.02562 * 16 6 5 19 19 C 1.52992 * 109.46961 * 59.99659 * 16 6 5 20 20 H 1.09001 * 109.46812 * 299.99658 * 1 2 3 21 21 H 1.09000 * 109.47360 * 60.00025 * 1 2 3 22 22 H 1.09002 * 109.46935 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47060 * 299.99649 * 4 2 1 24 24 H 1.09004 * 109.47059 * 60.00133 * 4 2 1 25 25 H 1.09001 * 109.47194 * 179.97438 * 5 4 2 26 26 H 1.09002 * 109.47131 * 300.00452 * 5 4 2 27 27 H 0.96705 * 113.99788 * 59.99749 * 7 6 5 28 28 H 0.97009 * 120.00114 * 180.02562 * 11 10 8 29 29 H 1.09002 * 109.47153 * 299.99641 * 18 16 6 30 30 H 1.09001 * 109.46832 * 179.97438 * 18 16 6 31 31 H 1.09004 * 109.47261 * 59.99813 * 18 16 6 32 32 H 1.09002 * 109.47103 * 60.00608 * 19 16 6 33 33 H 1.09001 * 109.47066 * 180.02562 * 19 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4416 -0.0003 7 8 3.6046 -2.7891 -0.0001 8 6 5.5875 -1.4416 -0.0009 9 1 6.1278 -0.9737 0.8088 10 6 6.2765 -2.0389 -1.0351 11 7 5.6186 -2.6081 -2.0213 12 14 8.1445 -2.0395 -1.0355 13 1 8.6400 -1.3401 0.1773 14 1 8.6391 -3.4398 -1.0356 15 1 8.6395 -1.3396 -2.2481 16 6 3.5705 -0.7205 1.2490 17 1 3.9335 0.3073 1.2488 18 6 4.0815 -1.4411 2.4981 19 6 2.0405 -0.7210 1.2492 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6767 -1.7488 -1.2493 24 1 1.6767 -0.2073 -2.1393 25 1 3.9334 -1.2348 -2.1394 26 1 3.9330 0.3072 -1.2497 27 1 3.8900 -3.3071 -0.7652 28 1 6.1033 -3.0287 -2.7487 29 1 3.7188 -2.4690 2.4985 30 1 3.7184 -0.9270 3.3881 31 1 5.1715 -1.4403 2.4977 32 1 1.6775 -1.7487 1.2494 33 1 1.6772 -0.2068 2.1390 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879307.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:35 Heat of formation + Delta-G solvation = -85.436396 kcal Electronic energy + Delta-G solvation = -13809.593558 eV Core-core repulsion = 11640.820700 eV Total energy + Delta-G solvation = -2168.772858 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.47738 -34.57133 -32.11405 -31.88180 -29.77100 -26.54175 -25.59641 -23.40018 -20.93252 -19.55370 -18.46202 -16.79904 -14.98461 -14.71978 -13.88459 -13.48266 -13.32725 -12.92938 -12.49851 -12.19268 -11.76805 -11.58638 -11.38653 -10.98244 -10.87509 -10.84975 -10.50128 -10.31235 -10.08128 -9.97800 -9.70753 -9.46770 -9.40606 -8.64443 -8.45723 -7.81414 -6.07403 -4.17422 3.25279 3.34059 3.38223 4.37613 5.15886 5.45368 5.51427 5.62422 5.98601 6.08001 6.15233 6.27545 6.31059 6.40614 6.43664 6.52064 6.62268 6.67910 6.75983 6.81867 6.88151 7.02203 7.19258 7.24135 7.37334 7.43782 7.71751 7.84310 8.12188 8.32576 8.85109 9.50664 9.69476 10.94623 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049375 B = 0.012548 C = 0.011126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.955143 B = 2230.835741 C = 2515.916482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.057 0.943 4 C -0.108 4.108 5 C -0.138 4.138 6 C 0.259 3.741 7 O -0.588 6.588 8 C -0.528 4.528 9 H 0.059 0.941 10 C 0.067 3.933 11 N -0.900 5.900 12 Si 0.894 3.106 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.071 4.071 17 H 0.058 0.942 18 C -0.129 4.129 19 C -0.101 4.101 20 H 0.045 0.955 21 H 0.046 0.954 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.037 0.963 25 H 0.092 0.908 26 H 0.037 0.963 27 H 0.376 0.624 28 H 0.264 0.736 29 H 0.054 0.946 30 H 0.025 0.975 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.419 3.169 2.496 6.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.076 0.924 4 C -0.145 4.145 5 C -0.177 4.177 6 C 0.220 3.780 7 O -0.397 6.397 8 C -0.566 4.566 9 H 0.078 0.922 10 C -0.133 4.133 11 N -0.541 5.541 12 Si 0.722 3.278 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.089 4.089 17 H 0.076 0.924 18 C -0.186 4.186 19 C -0.139 4.139 20 H 0.064 0.936 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.055 0.945 25 H 0.110 0.890 26 H 0.056 0.944 27 H 0.226 0.774 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.660 3.273 2.902 7.153 hybrid contribution 1.360 -0.099 -0.692 1.529 sum -4.300 3.174 2.210 5.783 Atomic orbital electron populations 1.21834 0.96673 1.01190 1.00376 1.21128 0.93943 0.99160 0.96678 0.92425 1.21561 0.98434 0.99585 0.94950 1.22193 0.91819 0.99951 1.03693 1.18509 0.90724 0.79998 0.88763 1.86081 1.77443 1.25515 1.50655 1.21882 0.92315 1.35712 1.06685 0.92245 1.24991 0.98603 0.94782 0.94972 1.69610 1.35321 1.38155 1.11022 0.86512 0.85649 0.77729 0.77908 1.19813 1.20992 1.21058 1.21031 0.93376 0.98324 0.96209 0.92396 1.21632 1.01402 1.00231 0.95360 1.21560 0.96610 1.00256 0.95470 0.93600 0.93505 0.93028 0.92323 0.94464 0.88994 0.94373 0.77408 0.92611 0.92732 0.95556 0.92407 0.91744 0.94159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.19 37.16 0.34 -1.80 16 2 C -0.09 -1.63 2.72 -90.62 -0.25 -1.88 16 3 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 4 C -0.11 -2.17 5.06 -26.73 -0.14 -2.30 16 5 C -0.14 -3.26 4.69 -26.73 -0.13 -3.39 16 6 C 0.26 6.36 0.35 -91.77 -0.03 6.33 16 7 O -0.59 -15.07 10.94 -35.23 -0.39 -15.45 16 8 C -0.53 -14.15 7.52 -34.44 -0.26 -14.41 16 9 H 0.06 1.60 6.71 -52.49 -0.35 1.25 16 10 C 0.07 1.79 5.22 -17.82 -0.09 1.69 16 11 N -0.90 -24.18 9.68 55.43 0.54 -23.64 16 12 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 13 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 C -0.07 -1.53 2.04 -90.63 -0.18 -1.72 16 17 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 18 C -0.13 -2.66 8.80 37.16 0.33 -2.34 16 19 C -0.10 -1.94 4.34 -26.74 -0.12 -2.06 16 20 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 1.23 7.68 -51.93 -0.40 0.83 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.38 10.00 7.14 45.56 0.33 10.32 16 28 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.05 1.17 7.68 -51.93 -0.40 0.77 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 1.25 6.62 -51.93 -0.34 0.90 16 32 H 0.06 1.31 7.68 -51.93 -0.40 0.91 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 252.58 15.07 3.81 3.81 Total: -1.00 -26.55 252.58 -6.41 -32.96 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -4.82 Total: 8.25 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -0.52 Total: -21.86 kcal Atomic # 7 Polarization: -24.18 SS G_CDS: 0.54 Total: -23.64 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.39 Total: -15.45 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -26.55 -6.41 -32.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879307.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.475 kcal (2) G-P(sol) polarization free energy of solvation -26.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds