Wall clock time and date at job start Mon Mar 30 2020 02:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47262 * 2 1 4 4 C 1.53001 * 109.47135 * 239.99642 * 2 1 3 5 5 C 1.52995 * 109.46873 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.47331 * 60.00406 * 5 4 2 7 7 H 1.08996 * 109.47144 * 59.99719 * 6 5 4 8 8 C 1.53001 * 109.47043 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.46810 * 299.99633 * 6 5 4 10 10 O 1.42902 * 109.47089 * 300.00060 * 9 6 5 11 11 C 1.50693 * 109.47092 * 180.02562 * 9 6 5 12 12 H 1.08004 * 119.99781 * 294.15326 * 11 9 6 13 13 C 1.37880 * 120.00428 * 114.15504 * 11 9 6 14 14 N 1.31513 * 120.00341 * 168.37919 * 13 11 9 15 15 Si 1.86798 * 119.99520 * 348.38294 * 13 11 9 16 16 H 1.48498 * 109.47347 * 66.14010 * 15 13 11 17 17 H 1.48509 * 109.46796 * 186.13553 * 15 13 11 18 18 H 1.48496 * 109.47294 * 306.13358 * 15 13 11 19 19 C 1.52995 * 109.47103 * 59.99775 * 9 6 5 20 20 H 1.08996 * 109.47262 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47139 * 300.00524 * 1 2 3 22 22 H 1.09003 * 109.46738 * 59.99990 * 1 2 3 23 23 H 1.09000 * 109.47372 * 60.00174 * 4 2 1 24 24 H 1.08998 * 109.46827 * 300.00303 * 4 2 1 25 25 H 1.09004 * 109.47015 * 180.02562 * 5 4 2 26 26 H 1.08998 * 109.47484 * 299.99708 * 5 4 2 27 27 H 1.08996 * 109.47262 * 59.99936 * 8 6 5 28 28 H 1.09000 * 109.46849 * 179.97438 * 8 6 5 29 29 H 1.08995 * 109.47139 * 299.99412 * 8 6 5 30 30 H 0.96700 * 113.99624 * 166.86434 * 10 9 6 31 31 H 0.96997 * 120.00495 * 180.02562 * 14 13 11 32 32 H 1.09004 * 109.47245 * 179.97438 * 19 9 6 33 33 H 1.09008 * 109.46987 * 60.00299 * 19 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2488 6 6 4.0795 -1.4435 0.0005 7 1 3.7158 -2.4710 0.0002 8 6 5.6095 -1.4445 0.0005 9 6 3.5695 -0.7222 1.2497 10 8 4.0463 0.6250 1.2499 11 6 4.0718 -1.4325 2.4801 12 1 3.7353 -2.4349 2.7001 13 6 4.9608 -0.8027 3.3251 14 7 5.2236 -1.3184 4.5061 15 14 5.7920 0.7831 2.7925 16 1 4.7744 1.8572 2.6662 17 1 6.8036 1.1763 3.8062 18 1 6.4590 0.5764 1.4820 19 6 2.0395 -0.7215 1.2493 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 1.6767 -0.2076 -2.1392 24 1 1.6766 -1.7489 -1.2491 25 1 3.9333 -1.2354 -2.1390 26 1 3.9337 0.3056 -1.2487 27 1 5.9735 -0.4172 0.0004 28 1 5.9724 -1.9582 0.8907 29 1 5.9725 -1.9587 -0.8894 30 1 3.6080 1.1972 1.8945 31 1 5.8487 -0.8752 5.1007 32 1 1.6762 -0.2080 2.1395 33 1 1.6758 -1.7491 1.2491 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879330.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:07 Heat of formation + Delta-G solvation = -69.557600 kcal Electronic energy + Delta-G solvation = -13972.904945 eV Core-core repulsion = 11804.820643 eV Total energy + Delta-G solvation = -2168.084302 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.03326 -35.08141 -32.92216 -32.10117 -29.48736 -27.84148 -25.08969 -23.51036 -21.36218 -19.76285 -18.97277 -16.95104 -15.58926 -14.92759 -14.57951 -13.99890 -13.51408 -12.82060 -12.73691 -12.53942 -12.25654 -11.73500 -11.70657 -11.35225 -11.08875 -10.81087 -10.67757 -10.43417 -10.10959 -9.90551 -9.75803 -9.69359 -9.29960 -8.96017 -8.32096 -8.00437 -6.02524 -4.07870 3.44294 3.65948 3.84741 4.64023 5.11726 5.24886 5.35524 5.46883 5.57452 5.73926 5.82845 6.02166 6.11384 6.15218 6.17989 6.32364 6.37528 6.42843 6.51495 6.56820 6.68775 6.72970 6.81379 6.96460 7.04227 7.21143 7.42455 7.43412 7.71556 8.30214 8.70978 8.95503 9.60878 11.06787 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040906 B = 0.015466 C = 0.013913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.328860 B = 1810.007217 C = 2012.025746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.067 0.933 4 C -0.107 4.107 5 C -0.115 4.115 6 C -0.069 4.069 7 H 0.064 0.936 8 C -0.138 4.138 9 C 0.226 3.774 10 O -0.553 6.553 11 C -0.549 4.549 12 H 0.075 0.925 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.995 3.005 16 H -0.314 1.314 17 H -0.348 1.348 18 H -0.281 1.281 19 C -0.126 4.126 20 H 0.050 0.950 21 H 0.050 0.950 22 H 0.045 0.955 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.373 0.627 31 H 0.263 0.737 32 H 0.056 0.944 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.576 2.915 -9.262 11.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.086 0.914 4 C -0.145 4.145 5 C -0.153 4.153 6 C -0.087 4.087 7 H 0.082 0.918 8 C -0.195 4.195 9 C 0.187 3.813 10 O -0.365 6.365 11 C -0.586 4.586 12 H 0.093 0.907 13 C -0.146 4.146 14 N -0.533 5.533 15 Si 0.840 3.160 16 H -0.247 1.247 17 H -0.284 1.284 18 H -0.209 1.209 19 C -0.164 4.164 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.225 0.775 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.116 2.625 -9.556 11.153 hybrid contribution -0.002 0.877 0.275 0.919 sum -5.118 3.501 -9.281 11.162 Atomic orbital electron populations 1.21840 0.96479 1.01183 1.00694 1.21189 0.94080 1.00108 0.96031 0.91431 1.21522 0.96304 0.99821 0.96815 1.21626 0.94679 1.01234 0.97744 1.21168 0.95911 0.98190 0.93470 0.91810 1.21817 0.95719 1.01717 1.00244 1.19346 0.88896 0.79087 0.94005 1.86083 1.62156 1.23786 1.64496 1.21233 1.28132 1.03402 1.05849 0.90678 1.25307 0.96005 0.99375 0.93959 1.70013 1.34458 1.41283 1.07530 0.85022 0.75815 0.80068 0.75051 1.24675 1.28362 1.20900 1.22308 0.98558 1.00074 0.95473 0.93128 0.93107 0.93611 0.93331 0.92735 0.93627 0.91867 0.92586 0.91423 0.95390 0.77463 0.92814 0.92537 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.19 37.16 0.34 -1.65 16 2 C -0.10 -1.56 2.58 -90.62 -0.23 -1.79 16 3 H 0.07 1.14 7.68 -51.93 -0.40 0.74 16 4 C -0.11 -1.68 5.20 -26.73 -0.14 -1.82 16 5 C -0.12 -2.01 5.06 -26.73 -0.14 -2.15 16 6 C -0.07 -1.41 2.07 -90.62 -0.19 -1.60 16 7 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 8 C -0.14 -2.93 7.92 37.16 0.29 -2.64 16 9 C 0.23 5.05 0.56 -91.78 -0.05 5.00 16 10 O -0.55 -12.34 6.10 -35.23 -0.22 -12.55 16 11 C -0.55 -14.92 7.57 -34.44 -0.26 -15.18 16 12 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 15 Si 0.99 25.00 23.81 -169.99 -4.05 20.95 16 16 H -0.31 -7.30 5.45 56.52 0.31 -6.99 16 17 H -0.35 -9.18 7.11 56.52 0.40 -8.78 16 18 H -0.28 -7.03 5.17 56.52 0.29 -6.74 16 19 C -0.13 -2.46 4.06 -26.73 -0.11 -2.57 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 1.16 7.68 -51.93 -0.40 0.76 16 27 H 0.06 1.25 5.71 -51.93 -0.30 0.95 16 28 H 0.07 1.59 7.21 -51.93 -0.37 1.22 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.37 7.91 6.35 45.56 0.29 8.20 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 LS Contribution 243.69 15.07 3.67 3.67 Total: -1.00 -29.34 243.69 -5.56 -34.90 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.17 Total: 2.55 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: -0.58 Total: -22.91 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.77 Total: -26.62 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.22 Total: -12.55 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -4.05 Total: 20.95 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.34 -5.56 -34.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879330.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.653 kcal (2) G-P(sol) polarization free energy of solvation -29.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds