Wall clock time and date at job start Mon Mar 30 2020 02:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.78134 * 2 1 4 4 C 1.54238 * 109.63207 * 239.51553 * 2 1 3 5 5 C 1.45543 * 112.40741 * 160.29942 * 4 2 1 6 6 C 1.54241 * 112.40472 * 61.94022 * 5 4 2 7 7 C 1.50468 * 108.51926 * 280.00684 * 6 5 4 8 8 O 1.42904 * 108.87656 * 333.37596 * 7 6 5 9 9 C 1.50695 * 108.88053 * 214.93021 * 7 6 5 10 10 H 1.07997 * 120.00098 * 237.02105 * 9 7 6 11 11 C 1.37873 * 119.99880 * 57.02107 * 9 7 6 12 12 N 1.31519 * 120.00390 * 0.02562 * 11 9 7 13 13 Si 1.86806 * 120.00225 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46722 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47311 * 120.00019 * 13 11 9 16 16 H 1.48498 * 109.47207 * 240.00130 * 13 11 9 17 17 C 1.54064 * 112.49925 * 94.15076 * 7 6 5 18 18 C 1.50474 * 109.63224 * 120.47923 * 2 1 3 19 19 H 1.08998 * 109.47272 * 299.51452 * 1 2 3 20 20 H 1.09000 * 109.47241 * 59.52348 * 1 2 3 21 21 H 1.09001 * 109.46562 * 179.51596 * 1 2 3 22 22 H 1.09004 * 108.89210 * 39.55272 * 4 2 1 23 23 H 1.09000 * 108.81922 * 281.00596 * 4 2 1 24 24 H 1.08996 * 108.89528 * 301.18778 * 5 4 2 25 25 H 1.08997 * 108.81882 * 182.63812 * 5 4 2 26 26 H 1.09001 * 109.62960 * 160.29764 * 6 5 4 27 27 H 1.09007 * 109.62879 * 39.71573 * 6 5 4 28 28 H 0.96697 * 113.99978 * 302.97957 * 8 7 6 29 29 H 0.96994 * 120.00396 * 180.02562 * 12 11 9 30 30 H 1.09000 * 108.81939 * 197.42782 * 17 7 6 31 31 H 1.09001 * 108.81307 * 79.14682 * 17 7 6 32 32 H 1.08997 * 108.87467 * 93.08397 * 18 2 1 33 33 H 1.09000 * 108.87450 * 334.64195 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0482 -0.7370 -1.2519 5 6 3.4277 -0.3953 -1.5655 6 6 4.4029 -0.7943 -0.4391 7 6 4.3396 0.2518 0.6406 8 8 3.9402 1.4941 0.0580 9 6 5.7120 0.4167 1.2408 10 1 5.8581 0.2751 2.3015 11 6 6.7811 0.7485 0.4359 12 7 6.6031 0.9215 -0.8556 13 14 8.4825 0.9522 1.1798 14 1 8.4158 0.7060 2.6427 15 1 9.4153 -0.0201 0.5557 16 1 8.9687 2.3334 0.9325 17 6 3.3469 -0.1156 1.7600 18 6 2.0355 -0.7189 1.2214 19 1 -0.3634 0.5063 0.8943 20 1 -0.3634 0.5212 -0.8857 21 1 -0.3632 -1.0277 -0.0087 22 1 1.4178 -0.4752 -2.1018 23 1 1.9808 -1.8113 -1.0806 24 1 3.4968 0.6804 -1.7277 25 1 3.7177 -0.9093 -2.4819 26 1 5.4167 -0.8506 -0.8354 27 1 4.1126 -1.7617 -0.0291 28 1 4.5162 1.7961 -0.6576 29 1 7.3553 1.1545 -1.4219 30 1 3.1120 0.7829 2.3306 31 1 3.8191 -0.8384 2.4253 32 1 2.2063 -1.7654 0.9692 33 1 1.2762 -0.6655 2.0016 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879473.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:51 Heat of formation + Delta-G solvation = -73.219716 kcal Electronic energy + Delta-G solvation = -13892.528612 eV Core-core repulsion = 11724.285509 eV Total energy + Delta-G solvation = -2168.243103 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.67770 -34.93394 -32.03520 -31.64850 -30.57734 -26.92354 -25.07121 -23.02489 -21.76182 -19.18891 -18.07005 -16.81368 -15.24827 -14.72490 -14.03189 -13.85247 -13.49771 -13.06444 -12.53478 -12.13667 -12.04372 -11.63926 -11.17310 -11.09772 -11.00280 -10.64309 -10.32650 -10.23028 -9.89451 -9.79475 -9.48682 -9.41490 -9.25047 -8.82979 -8.38855 -7.83313 -6.06592 -4.19115 3.25367 3.34108 3.38492 4.37620 5.16576 5.42286 5.53039 5.61676 5.96127 5.97402 6.13373 6.27538 6.29296 6.34888 6.41825 6.54820 6.61150 6.72151 6.79672 6.95196 7.06827 7.09861 7.17593 7.31184 7.34617 7.56488 7.75234 7.88094 8.12894 8.36086 8.85497 9.48760 9.67643 10.93760 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.061360 B = 0.011712 C = 0.010820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.216282 B = 2390.199974 C = 2587.176012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.100 0.900 4 C -0.097 4.097 5 C -0.115 4.115 6 C -0.124 4.124 7 C 0.252 3.748 8 O -0.589 6.589 9 C -0.533 4.533 10 H 0.056 0.944 11 C 0.065 3.935 12 N -0.895 5.895 13 Si 0.894 3.106 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.096 4.096 18 C -0.107 4.107 19 H 0.047 0.953 20 H 0.046 0.954 21 H 0.043 0.957 22 H 0.039 0.961 23 H 0.041 0.959 24 H 0.073 0.927 25 H 0.031 0.969 26 H 0.091 0.909 27 H 0.028 0.972 28 H 0.375 0.625 29 H 0.264 0.736 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.575 -2.340 -0.224 6.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.119 0.881 4 C -0.134 4.134 5 C -0.152 4.152 6 C -0.162 4.162 7 C 0.213 3.787 8 O -0.399 6.399 9 C -0.572 4.572 10 H 0.074 0.926 11 C -0.135 4.135 12 N -0.536 5.536 13 Si 0.723 3.277 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.134 4.134 18 C -0.144 4.144 19 H 0.066 0.934 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.091 0.909 25 H 0.050 0.950 26 H 0.109 0.891 27 H 0.047 0.953 28 H 0.226 0.774 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.953 -2.355 0.071 7.341 hybrid contribution 1.498 0.026 -0.054 1.499 sum -5.455 -2.329 0.016 5.931 Atomic orbital electron populations 1.21900 0.96977 1.00446 1.00628 1.21053 0.93157 1.02665 0.94720 0.88149 1.20458 0.97473 0.98685 0.96792 1.20345 0.94116 1.02740 0.98044 1.21940 1.00602 0.97446 0.96217 1.18316 0.90129 0.81948 0.88344 1.86129 1.56587 1.41446 1.55707 1.22001 0.93613 1.46720 0.94826 0.92611 1.24980 0.99071 0.94667 0.94810 1.69694 1.31658 1.48532 1.03692 0.86503 0.84103 0.77698 0.79435 1.19865 1.21039 1.20989 1.21881 0.94016 0.99136 0.98320 1.21377 0.97132 0.99153 0.96745 0.93429 0.93486 0.93766 0.94181 0.94067 0.90875 0.95028 0.89076 0.95337 0.77389 0.92629 0.93179 0.92781 0.93383 0.93969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.87 37.16 0.33 -1.80 16 2 C -0.10 -1.78 2.40 -91.24 -0.22 -2.00 16 3 H 0.10 2.10 5.71 -51.93 -0.30 1.80 16 4 C -0.10 -1.77 4.69 -29.60 -0.14 -1.91 16 5 C -0.12 -2.41 5.16 -29.60 -0.15 -2.57 16 6 C -0.12 -2.92 4.59 -27.35 -0.13 -3.05 16 7 C 0.25 6.20 0.65 -92.48 -0.06 6.14 16 8 O -0.59 -14.85 9.01 -35.23 -0.32 -15.16 16 9 C -0.53 -14.48 8.09 -34.44 -0.28 -14.76 16 10 H 0.06 1.53 7.69 -52.49 -0.40 1.12 16 11 C 0.07 1.74 4.93 -17.82 -0.09 1.66 16 12 N -0.89 -23.88 9.79 55.43 0.54 -23.34 16 13 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 17 C -0.10 -2.10 4.90 -25.62 -0.13 -2.22 16 18 C -0.11 -1.99 4.89 -27.44 -0.13 -2.13 16 19 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 20 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.04 0.67 7.97 -51.93 -0.41 0.26 16 23 H 0.04 0.73 7.46 -51.93 -0.39 0.34 16 24 H 0.07 1.63 5.70 -51.93 -0.30 1.34 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.09 2.40 5.63 -51.93 -0.29 2.11 16 27 H 0.03 0.64 6.98 -51.92 -0.36 0.28 16 28 H 0.38 9.81 6.26 45.56 0.29 10.09 16 29 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.05 1.16 7.94 -51.93 -0.41 0.75 16 32 H 0.05 0.88 6.63 -51.93 -0.34 0.54 16 33 H 0.04 0.71 7.67 -51.93 -0.40 0.31 16 LS Contribution 243.42 15.07 3.67 3.67 Total: -1.00 -26.43 243.42 -6.69 -33.12 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -4.57 Total: 8.41 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -0.99 Total: -22.65 kcal Atomic # 7 Polarization: -23.88 SS G_CDS: 0.54 Total: -23.34 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.32 Total: -15.16 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -26.43 -6.69 -33.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879473.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.099 kcal (2) G-P(sol) polarization free energy of solvation -26.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds