Wall clock time and date at job start Mon Mar 30 2020 02:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 108.79185 * 2 1 4 4 C 1.54241 * 108.89526 * 241.44484 * 2 1 3 5 5 C 1.50478 * 108.51667 * 159.25003 * 4 2 1 6 6 C 1.54068 * 112.49566 * 94.15372 * 5 4 2 7 7 C 1.54072 * 112.81836 * 318.28105 * 6 5 4 8 8 O 1.42901 * 108.87735 * 78.96237 * 7 6 5 9 9 C 1.50691 * 108.87910 * 197.50638 * 7 6 5 10 10 H 1.08003 * 119.99930 * 4.69911 * 9 7 6 11 11 C 1.37877 * 120.00156 * 184.69335 * 9 7 6 12 12 N 1.31507 * 119.99985 * 5.36832 * 11 9 7 13 13 Si 1.86805 * 119.99829 * 185.36668 * 11 9 7 14 14 H 1.48494 * 109.47326 * 60.00323 * 13 11 9 15 15 H 1.48499 * 109.46999 * 299.99621 * 13 11 9 16 16 H 1.48501 * 109.46751 * 180.02562 * 13 11 9 17 17 C 1.50472 * 112.49540 * 318.28695 * 7 6 5 18 18 C 1.45537 * 108.89608 * 118.55066 * 2 1 3 19 19 H 1.08998 * 109.47144 * 178.56007 * 1 2 3 20 20 H 1.09006 * 109.47143 * 298.55782 * 1 2 3 21 21 H 1.09001 * 109.47079 * 58.55928 * 1 2 3 22 22 H 1.08998 * 109.63119 * 39.54371 * 4 2 1 23 23 H 1.08994 * 109.62773 * 278.95838 * 4 2 1 24 24 H 1.08993 * 108.87954 * 333.37523 * 5 4 2 25 25 H 1.09000 * 108.79796 * 214.87173 * 5 4 2 26 26 H 1.09001 * 108.80990 * 197.42499 * 6 5 4 27 27 H 1.09000 * 108.81399 * 79.14146 * 6 5 4 28 28 H 0.96699 * 114.00086 * 60.66477 * 8 7 6 29 29 H 0.97002 * 120.00079 * 3.85591 * 12 11 9 30 30 H 1.09004 * 109.62929 * 213.85619 * 17 7 6 31 31 H 1.09002 * 109.62937 * 334.43796 * 17 7 6 32 32 H 1.08997 * 108.90003 * 303.45070 * 18 2 1 33 33 H 1.08999 * 108.89349 * 61.94310 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8811 1.0319 0.0000 4 6 2.0295 -0.6975 -1.2818 5 6 3.4467 -0.2631 -1.5410 6 6 4.4804 -1.2403 -0.9493 7 6 4.0937 -1.7407 0.4556 8 8 3.1087 -2.7679 0.3257 9 6 5.3158 -2.3194 1.1206 10 1 6.2764 -2.2604 0.6304 11 6 5.2079 -2.9242 2.3550 12 7 4.0247 -3.0906 2.9044 13 14 6.7422 -3.5073 3.2467 14 1 7.6421 -2.3517 3.4911 15 1 7.4459 -4.5153 2.4137 16 1 6.3582 -4.1192 4.5442 17 6 3.5394 -0.6447 1.3248 18 6 2.0013 -0.6581 1.2095 19 1 -0.3633 -1.0273 -0.0258 20 1 -0.3634 0.4913 0.9027 21 1 -0.3633 0.5361 -0.8768 22 1 1.3991 -0.4116 -2.1237 23 1 1.9968 -1.7786 -1.1468 24 1 3.5998 0.7219 -1.1002 25 1 3.6018 -0.1951 -2.6178 26 1 5.4456 -0.7374 -0.8899 27 1 4.5739 -2.0985 -1.6147 28 1 3.4079 -3.5385 -0.1760 29 1 3.2242 -2.8390 2.4178 30 1 3.8303 -0.8167 2.3612 31 1 3.9233 0.3186 0.9889 32 1 1.5779 -0.1499 2.0758 33 1 1.6567 -1.6922 1.2058 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879482.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:54 Heat of formation + Delta-G solvation = -78.080757 kcal Electronic energy + Delta-G solvation = -13948.911972 eV Core-core repulsion = 11780.458079 eV Total energy + Delta-G solvation = -2168.453893 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.90960 -35.23176 -32.34118 -31.93034 -30.01919 -27.16473 -24.66380 -23.05701 -21.73580 -19.33399 -18.66744 -17.38814 -15.07735 -14.79914 -14.00185 -13.83220 -13.55761 -13.00566 -12.51274 -12.25445 -12.10651 -11.71162 -11.53846 -11.25119 -10.82274 -10.67545 -10.41940 -10.18488 -10.01191 -9.77703 -9.60795 -9.55454 -9.46359 -8.89973 -8.28032 -7.76670 -6.17617 -4.07252 3.45416 3.46542 3.65611 4.57212 5.26576 5.37618 5.45595 5.51429 5.80532 5.87835 5.88642 6.07461 6.19528 6.27821 6.37346 6.38402 6.41729 6.44030 6.59707 6.76155 6.86757 6.97870 6.99901 7.02314 7.11057 7.41678 7.57516 7.86587 8.17586 8.46524 9.01061 9.22949 9.77847 11.18238 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053648 B = 0.012345 C = 0.011062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.792372 B = 2267.589157 C = 2530.578453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 H 0.049 0.951 4 C -0.115 4.115 5 C -0.113 4.113 6 C -0.127 4.127 7 C 0.240 3.760 8 O -0.572 6.572 9 C -0.645 4.645 10 H 0.044 0.956 11 C 0.036 3.964 12 N -0.898 5.898 13 Si 1.058 2.942 14 H -0.290 1.290 15 H -0.290 1.290 16 H -0.283 1.283 17 C -0.089 4.089 18 C -0.114 4.114 19 H 0.053 0.947 20 H 0.046 0.954 21 H 0.044 0.956 22 H 0.042 0.958 23 H 0.088 0.912 24 H 0.049 0.951 25 H 0.040 0.960 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.349 0.651 29 H 0.296 0.704 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.034 0.966 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.256 4.198 -5.739 7.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 H 0.068 0.932 4 C -0.152 4.152 5 C -0.151 4.151 6 C -0.165 4.165 7 C 0.202 3.798 8 O -0.377 6.377 9 C -0.683 4.683 10 H 0.063 0.937 11 C -0.173 4.173 12 N -0.535 5.535 13 Si 0.887 3.113 14 H -0.216 1.216 15 H -0.217 1.217 16 H -0.209 1.209 17 C -0.127 4.127 18 C -0.151 4.151 19 H 0.072 0.928 20 H 0.065 0.935 21 H 0.063 0.937 22 H 0.061 0.939 23 H 0.107 0.893 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.194 0.806 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.104 3.953 -3.984 6.414 hybrid contribution 0.050 0.426 -1.802 1.853 sum -3.055 4.379 -5.787 7.874 Atomic orbital electron populations 1.21936 0.96665 1.01362 1.00351 1.19986 0.94396 0.98788 0.96403 0.93220 1.21472 0.95084 1.03075 0.95590 1.21322 0.95798 0.99400 0.98581 1.22532 0.97351 0.97721 0.98869 1.18513 0.86577 0.85703 0.89008 1.86417 1.43510 1.30134 1.77608 1.22507 0.94653 1.43759 1.07333 0.93726 1.25589 1.02553 0.94204 0.94919 1.70586 0.99393 1.42102 1.41379 0.83742 0.74861 0.76369 0.76350 1.21629 1.21676 1.20886 1.21362 0.93139 0.96766 1.01462 1.20368 0.97439 1.02135 0.95161 0.92833 0.93467 0.93722 0.93920 0.89349 0.93212 0.94135 0.93039 0.93718 0.80550 0.88975 0.90963 0.94089 0.94756 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.97 37.16 0.33 -1.88 16 2 C -0.08 -1.37 2.21 -93.49 -0.21 -1.58 16 3 H 0.05 0.87 7.47 -51.93 -0.39 0.48 16 4 C -0.11 -2.02 4.98 -27.34 -0.14 -2.15 16 5 C -0.11 -2.04 5.31 -27.43 -0.15 -2.19 16 6 C -0.13 -2.66 4.90 -25.61 -0.13 -2.79 16 7 C 0.24 5.78 0.53 -92.48 -0.05 5.73 16 8 O -0.57 -13.51 6.46 -35.23 -0.23 -13.74 16 9 C -0.64 -17.69 7.99 -34.44 -0.28 -17.96 16 10 H 0.04 1.24 7.67 -52.48 -0.40 0.84 16 11 C 0.04 1.02 4.85 -17.82 -0.09 0.93 16 12 N -0.90 -26.54 12.68 55.43 0.70 -25.84 16 13 Si 1.06 25.01 29.91 -169.99 -5.08 19.93 16 14 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 C -0.09 -2.11 4.27 -27.34 -0.12 -2.23 16 18 C -0.11 -2.37 4.18 -29.60 -0.12 -2.49 16 19 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 20 H 0.05 0.68 8.11 -51.93 -0.42 0.26 16 21 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 22 H 0.04 0.66 7.97 -51.93 -0.41 0.25 16 23 H 0.09 1.70 5.70 -51.93 -0.30 1.40 16 24 H 0.05 0.89 6.63 -51.93 -0.34 0.55 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 1.10 7.91 -51.93 -0.41 0.69 16 27 H 0.04 0.91 8.06 -51.93 -0.42 0.49 16 28 H 0.35 7.76 8.94 45.56 0.41 8.16 16 29 H 0.30 8.67 4.83 -40.82 -0.20 8.47 16 30 H 0.07 1.94 6.19 -51.93 -0.32 1.62 16 31 H 0.04 0.91 6.98 -51.93 -0.36 0.55 16 32 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.08 1.91 5.94 -51.93 -0.31 1.60 16 LS Contribution 243.45 15.07 3.67 3.67 Total: -1.00 -28.72 243.45 -6.23 -34.95 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -4.36 Total: 7.64 kcal Atomic # 6 Polarization: -25.68 SS G_CDS: -0.93 Total: -26.61 kcal Atomic # 7 Polarization: -26.54 SS G_CDS: 0.70 Total: -25.84 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.23 Total: -13.74 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.08 Total: 19.93 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.72 -6.23 -34.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879482.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.127 kcal (2) G-P(sol) polarization free energy of solvation -28.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds