Wall clock time and date at job start Mon Mar 30 2020 02:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 108.79185 * 2 1 4 4 C 1.54241 * 108.89526 * 241.44484 * 2 1 3 5 5 C 1.50478 * 108.51667 * 159.25003 * 4 2 1 6 6 C 1.54068 * 112.49566 * 94.15372 * 5 4 2 7 7 C 1.54072 * 112.81836 * 318.28105 * 6 5 4 8 8 O 1.42901 * 108.87735 * 78.96237 * 7 6 5 9 9 C 1.50691 * 108.87910 * 197.50638 * 7 6 5 10 10 H 1.08003 * 119.99930 * 4.69911 * 9 7 6 11 11 C 1.37877 * 120.00156 * 184.69335 * 9 7 6 12 12 N 1.31507 * 119.99985 * 5.36832 * 11 9 7 13 13 Si 1.86805 * 119.99829 * 185.36668 * 11 9 7 14 14 H 1.48494 * 109.47326 * 60.00323 * 13 11 9 15 15 H 1.48499 * 109.46999 * 299.99621 * 13 11 9 16 16 H 1.48501 * 109.46751 * 180.02562 * 13 11 9 17 17 C 1.50472 * 112.49540 * 318.28695 * 7 6 5 18 18 C 1.45537 * 108.89608 * 118.55066 * 2 1 3 19 19 H 1.08998 * 109.47144 * 178.56007 * 1 2 3 20 20 H 1.09006 * 109.47143 * 298.55782 * 1 2 3 21 21 H 1.09001 * 109.47079 * 58.55928 * 1 2 3 22 22 H 1.08998 * 109.63119 * 39.54371 * 4 2 1 23 23 H 1.08994 * 109.62773 * 278.95838 * 4 2 1 24 24 H 1.08993 * 108.87954 * 333.37523 * 5 4 2 25 25 H 1.09000 * 108.79796 * 214.87173 * 5 4 2 26 26 H 1.09001 * 108.80990 * 197.42499 * 6 5 4 27 27 H 1.09000 * 108.81399 * 79.14146 * 6 5 4 28 28 H 0.96699 * 114.00086 * 60.66477 * 8 7 6 29 29 H 0.97002 * 120.00079 * 3.85591 * 12 11 9 30 30 H 1.09004 * 109.62929 * 213.85619 * 17 7 6 31 31 H 1.09002 * 109.62937 * 334.43796 * 17 7 6 32 32 H 1.08997 * 108.90003 * 303.45070 * 18 2 1 33 33 H 1.08999 * 108.89349 * 61.94310 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8811 1.0319 0.0000 4 6 2.0295 -0.6975 -1.2818 5 6 3.4467 -0.2631 -1.5410 6 6 4.4804 -1.2403 -0.9493 7 6 4.0937 -1.7407 0.4556 8 8 3.1087 -2.7679 0.3257 9 6 5.3158 -2.3194 1.1206 10 1 6.2764 -2.2604 0.6304 11 6 5.2079 -2.9242 2.3550 12 7 4.0247 -3.0906 2.9044 13 14 6.7422 -3.5073 3.2467 14 1 7.6421 -2.3517 3.4911 15 1 7.4459 -4.5153 2.4137 16 1 6.3582 -4.1192 4.5442 17 6 3.5394 -0.6447 1.3248 18 6 2.0013 -0.6581 1.2095 19 1 -0.3633 -1.0273 -0.0258 20 1 -0.3634 0.4913 0.9027 21 1 -0.3633 0.5361 -0.8768 22 1 1.3991 -0.4116 -2.1237 23 1 1.9968 -1.7786 -1.1468 24 1 3.5998 0.7219 -1.1002 25 1 3.6018 -0.1951 -2.6178 26 1 5.4456 -0.7374 -0.8899 27 1 4.5739 -2.0985 -1.6147 28 1 3.4079 -3.5385 -0.1760 29 1 3.2242 -2.8390 2.4178 30 1 3.8303 -0.8167 2.3612 31 1 3.9233 0.3186 0.9889 32 1 1.5779 -0.1499 2.0758 33 1 1.6567 -1.6922 1.2058 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879482.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:54 Heat of formation + Delta-G solvation = -95.520456 kcal Electronic energy + Delta-G solvation = -13949.668215 eV Core-core repulsion = 11780.458079 eV Total energy + Delta-G solvation = -2169.210136 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.60699 -36.93159 -34.29410 -33.60242 -31.81923 -28.76101 -26.49384 -24.79803 -23.37341 -20.84664 -20.46726 -19.42018 -16.91220 -16.41732 -15.74494 -15.63114 -15.15012 -14.60073 -14.23036 -13.84664 -13.75278 -13.53625 -13.11264 -12.73939 -12.66042 -12.35176 -12.12929 -11.97125 -11.83787 -11.45670 -11.17209 -11.12764 -11.02067 -10.75725 -10.37506 -9.74021 -8.37099 -6.29090 1.52617 1.58721 1.78328 2.60327 3.26606 3.81874 3.92114 4.06359 4.17711 4.39157 4.40045 4.54369 4.60015 4.66339 4.89543 4.91571 4.94009 5.03020 5.12394 5.16124 5.27711 5.40002 5.45768 5.53677 5.55772 5.69534 5.82823 6.00909 6.05153 6.34784 6.81162 7.32148 7.65783 8.96936 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053648 B = 0.012345 C = 0.011062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.792372 B = 2267.589157 C = 2530.578453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.080 4.080 3 H 0.058 0.942 4 C -0.112 4.112 5 C -0.108 4.108 6 C -0.123 4.123 7 C 0.234 3.766 8 O -0.573 6.573 9 C -0.659 4.659 10 H 0.035 0.965 11 C -0.009 4.009 12 N -0.925 5.925 13 Si 1.100 2.900 14 H -0.277 1.277 15 H -0.275 1.275 16 H -0.287 1.287 17 C -0.087 4.087 18 C -0.100 4.100 19 H 0.047 0.953 20 H 0.052 0.948 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.047 0.953 28 H 0.352 0.648 29 H 0.288 0.712 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.035 0.965 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.568 5.033 -7.005 9.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.098 4.098 3 H 0.077 0.923 4 C -0.149 4.149 5 C -0.146 4.146 6 C -0.161 4.161 7 C 0.196 3.804 8 O -0.378 6.378 9 C -0.697 4.697 10 H 0.053 0.947 11 C -0.212 4.212 12 N -0.563 5.563 13 Si 0.924 3.076 14 H -0.203 1.203 15 H -0.200 1.200 16 H -0.213 1.213 17 C -0.125 4.125 18 C -0.137 4.137 19 H 0.066 0.934 20 H 0.071 0.929 21 H 0.088 0.912 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.198 0.802 29 H 0.101 0.899 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.416 4.794 -5.271 7.902 hybrid contribution 0.163 0.168 -1.422 1.441 sum -3.253 4.962 -6.693 8.944 Atomic orbital electron populations 1.21869 0.94445 1.01544 1.01894 1.19976 0.96321 0.98685 0.94858 0.92318 1.21441 0.95259 1.01787 0.96429 1.21286 0.95065 0.98290 0.99952 1.22421 0.97992 0.98593 0.97077 1.18552 0.85431 0.85733 0.90694 1.86425 1.43135 1.30365 1.77868 1.22924 0.95618 1.43491 1.07649 0.94683 1.26810 1.04230 0.94125 0.96084 1.70678 0.99813 1.44007 1.41788 0.83165 0.72319 0.76688 0.75388 1.20317 1.20033 1.21259 1.21245 0.95409 0.96963 0.98931 1.20247 0.95192 1.01084 0.97227 0.93394 0.92921 0.91210 0.90988 0.91264 0.92940 0.91529 0.93985 0.93451 0.80216 0.89903 0.94985 0.93221 0.94645 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 8.97 71.98 0.65 -3.20 16 2 C -0.08 -2.65 2.21 -12.65 -0.03 -2.68 16 3 H 0.06 1.86 7.47 -2.38 -0.02 1.85 16 4 C -0.11 -3.60 4.98 30.20 0.15 -3.45 16 5 C -0.11 -3.60 5.31 30.14 0.16 -3.44 16 6 C -0.12 -5.02 4.90 31.32 0.15 -4.86 16 7 C 0.23 11.30 0.53 -12.00 -0.01 11.30 16 8 O -0.57 -27.36 6.46 -148.98 -0.96 -28.32 16 9 C -0.66 -36.55 7.99 25.60 0.20 -36.35 16 10 H 0.03 1.96 7.67 -2.91 -0.02 1.93 16 11 C -0.01 -0.50 4.85 84.66 0.41 -0.09 16 12 N -0.92 -55.83 12.68 21.45 0.27 -55.56 16 13 Si 1.10 50.64 29.91 68.60 2.05 52.69 16 14 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 16 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 17 C -0.09 -4.16 4.27 30.20 0.13 -4.03 16 18 C -0.10 -4.13 4.18 28.74 0.12 -4.01 16 19 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 20 H 0.05 1.38 8.11 -2.38 -0.02 1.36 16 21 H 0.07 1.58 8.12 -2.39 -0.02 1.56 16 22 H 0.07 1.92 7.97 -2.39 -0.02 1.91 16 23 H 0.07 2.53 5.70 -2.39 -0.01 2.52 16 24 H 0.05 1.72 6.63 -2.39 -0.02 1.70 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.04 1.76 7.91 -2.39 -0.02 1.74 16 27 H 0.05 1.87 8.06 -2.39 -0.02 1.85 16 28 H 0.35 15.86 8.94 -74.06 -0.66 15.20 16 29 H 0.29 17.34 4.83 -92.71 -0.45 16.89 16 30 H 0.03 1.75 6.19 -2.38 -0.01 1.74 16 31 H 0.05 2.21 6.98 -2.39 -0.02 2.19 16 32 H 0.03 1.41 8.08 -2.39 -0.02 1.39 16 33 H 0.06 2.73 5.94 -2.39 -0.01 2.71 16 Total: -1.00 -61.46 243.45 4.04 -57.41 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.74 Total: 24.60 kcal Atomic # 6 Polarization: -52.76 SS G_CDS: 1.94 Total: -50.82 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.27 Total: -55.56 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.96 Total: -28.32 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.05 Total: 52.69 kcal Total: -61.46 4.04 -57.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879482.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.106 kcal (2) G-P(sol) polarization free energy of solvation -61.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds