Wall clock time and date at job start Mon Mar 30 2020 02:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 108.85747 * 2 1 4 4 C 1.50476 * 108.87492 * 118.46086 * 2 1 3 5 5 C 1.54246 * 108.51675 * 214.92766 * 4 2 1 6 6 C 1.45545 * 112.40907 * 280.01472 * 5 4 2 7 7 C 1.54241 * 112.40717 * 61.93132 * 6 5 4 8 8 O 1.42903 * 109.78562 * 39.82372 * 7 6 5 9 9 C 1.50700 * 109.62627 * 160.30263 * 7 6 5 10 10 H 1.08007 * 119.99783 * 113.55854 * 9 7 6 11 11 C 1.37879 * 120.00483 * 293.56328 * 9 7 6 12 12 N 1.31509 * 119.99787 * 4.77820 * 11 9 7 13 13 Si 1.86796 * 119.99997 * 184.50895 * 11 9 7 14 14 H 1.48503 * 109.46857 * 270.27195 * 13 11 9 15 15 H 1.48496 * 109.47089 * 30.27223 * 13 11 9 16 16 H 1.48498 * 109.47145 * 150.27620 * 13 11 9 17 17 C 1.50473 * 108.52466 * 280.01720 * 7 6 5 18 18 C 1.54062 * 108.87756 * 241.43483 * 2 1 3 19 19 H 1.09004 * 109.47101 * 178.56037 * 1 2 3 20 20 H 1.08996 * 109.46904 * 298.56004 * 1 2 3 21 21 H 1.08995 * 109.46978 * 58.56201 * 1 2 3 22 22 H 1.08994 * 109.63275 * 334.64063 * 4 2 1 23 23 H 1.09007 * 109.63027 * 95.22299 * 4 2 1 24 24 H 1.08996 * 108.89321 * 40.76369 * 5 4 2 25 25 H 1.08998 * 108.89282 * 159.35212 * 5 4 2 26 26 H 1.09005 * 108.89356 * 301.17847 * 6 5 4 27 27 H 1.08993 * 108.89642 * 182.69003 * 6 5 4 28 28 H 0.96703 * 113.99903 * 54.03775 * 8 7 6 29 29 H 0.96999 * 119.99945 * 5.25716 * 12 11 9 30 30 H 1.09006 * 108.87329 * 214.92368 * 17 7 6 31 31 H 1.08997 * 108.87457 * 333.37224 * 17 7 6 32 32 H 1.09002 * 108.81133 * 76.64630 * 18 2 1 33 33 H 1.08998 * 108.81642 * 318.37183 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8823 1.0315 0.0000 4 6 2.0168 -0.6785 1.2518 5 6 3.3099 0.0216 1.7173 6 6 4.4788 -0.4178 0.9696 7 6 4.3714 -0.0922 -0.5342 8 8 3.7861 1.1997 -0.7089 9 6 5.7439 -0.1144 -1.1562 10 1 5.9943 -0.8711 -1.8851 11 6 6.6800 0.8312 -0.7948 12 7 6.4084 1.6940 0.1598 13 14 8.3369 0.8819 -1.6559 14 1 9.2967 0.0083 -0.9342 15 1 8.1837 0.4013 -3.0526 16 1 8.8474 2.2763 -1.6653 17 6 3.5033 -1.1331 -1.1878 18 6 2.0285 -0.6970 -1.2803 19 1 -0.3633 -1.0274 -0.0258 20 1 -0.3633 0.4913 0.9026 21 1 -0.3633 0.5360 -0.8768 22 1 1.2575 -0.6002 2.0298 23 1 2.2237 -1.7282 1.0426 24 1 3.1939 1.0979 1.5903 25 1 3.4671 -0.1938 2.7741 26 1 4.5905 -1.4953 1.0904 27 1 5.3627 0.0744 1.3751 28 1 4.2372 1.9046 -0.2243 29 1 5.5816 1.6180 0.6614 30 1 3.8783 -1.3242 -2.1934 31 1 3.5628 -2.0553 -0.6100 32 1 1.9167 -0.0112 -2.1201 33 1 1.4125 -1.5773 -1.4639 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879486.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:56 Heat of formation + Delta-G solvation = -71.581914 kcal Electronic energy + Delta-G solvation = -13950.261135 eV Core-core repulsion = 11782.089052 eV Total energy + Delta-G solvation = -2168.172082 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.97823 -35.14063 -32.23395 -31.76921 -30.90418 -26.73841 -25.31063 -22.91587 -21.76678 -19.34838 -18.46807 -17.77971 -14.93828 -14.53750 -14.29913 -14.10660 -13.79886 -12.83773 -12.50293 -12.33214 -12.18306 -11.90895 -11.69977 -11.02607 -10.80203 -10.70007 -10.34672 -10.14284 -10.10491 -9.89934 -9.73041 -9.62256 -9.53388 -8.87538 -8.42296 -7.81605 -6.35829 -4.19325 3.40203 3.44145 3.60190 4.48005 5.16329 5.35271 5.44163 5.50248 5.78134 5.86887 5.99384 6.05954 6.15018 6.17609 6.26842 6.34410 6.36651 6.45963 6.59421 6.72406 6.88438 6.91769 7.02656 7.07508 7.19098 7.24586 7.44199 7.59589 8.13304 8.35142 8.74498 9.22963 9.53041 10.90578 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.059912 B = 0.011708 C = 0.011021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.236399 B = 2391.002912 C = 2540.086687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.093 0.907 4 C -0.106 4.106 5 C -0.107 4.107 6 C -0.152 4.152 7 C 0.243 3.757 8 O -0.578 6.578 9 C -0.608 4.608 10 H 0.052 0.948 11 C 0.029 3.971 12 N -0.916 5.916 13 Si 1.068 2.932 14 H -0.288 1.288 15 H -0.289 1.289 16 H -0.283 1.283 17 C -0.092 4.092 18 C -0.090 4.090 19 H 0.044 0.956 20 H 0.046 0.954 21 H 0.046 0.954 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.037 0.963 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.361 0.639 29 H 0.271 0.729 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.851 -3.212 1.204 7.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.111 0.889 4 C -0.144 4.144 5 C -0.144 4.144 6 C -0.191 4.191 7 C 0.204 3.796 8 O -0.386 6.386 9 C -0.646 4.646 10 H 0.070 0.930 11 C -0.174 4.174 12 N -0.558 5.558 13 Si 0.896 3.104 14 H -0.215 1.215 15 H -0.215 1.215 16 H -0.208 1.208 17 C -0.130 4.130 18 C -0.128 4.128 19 H 0.063 0.937 20 H 0.065 0.935 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.211 0.789 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.869 -2.719 0.726 6.509 hybrid contribution -0.917 -0.724 0.481 1.264 sum -6.786 -3.443 1.207 7.705 Atomic orbital electron populations 1.21994 0.97226 1.00524 1.00643 1.21037 0.93121 1.02539 0.94368 0.88911 1.21369 0.96782 0.99529 0.96693 1.20422 0.95480 1.00555 0.97992 1.21313 0.97728 1.00285 0.99727 1.18480 0.90865 0.80881 0.89405 1.86357 1.58197 1.18885 1.75195 1.22624 0.98051 1.17410 1.26566 0.92968 1.25799 1.03272 0.92300 0.96058 1.70921 1.28037 1.35960 1.20900 0.83569 0.74845 0.76449 0.75492 1.21526 1.21478 1.20849 1.21323 0.93776 0.97529 1.00342 1.21632 0.95726 0.98126 0.97267 0.93727 0.93495 0.93444 0.93278 0.92731 0.92449 0.94377 0.93829 0.91286 0.78942 0.91432 0.92866 0.93391 0.92871 0.94585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.84 37.16 0.33 -1.83 16 2 C -0.09 -1.66 2.18 -91.33 -0.20 -1.86 16 3 H 0.09 1.87 5.32 -51.93 -0.28 1.59 16 4 C -0.11 -1.86 5.13 -27.34 -0.14 -2.00 16 5 C -0.11 -2.10 5.18 -29.59 -0.15 -2.25 16 6 C -0.15 -3.48 3.92 -29.60 -0.12 -3.59 16 7 C 0.24 5.96 0.64 -92.38 -0.06 5.90 16 8 O -0.58 -14.41 8.62 -35.23 -0.30 -14.72 16 9 C -0.61 -16.87 8.07 -34.44 -0.28 -17.14 16 10 H 0.05 1.46 7.52 -52.48 -0.39 1.07 16 11 C 0.03 0.80 5.14 -17.82 -0.09 0.71 16 12 N -0.92 -26.05 12.42 55.43 0.69 -25.36 16 13 Si 1.07 24.88 29.91 -169.99 -5.08 19.80 16 14 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 C -0.09 -2.02 4.82 -27.44 -0.13 -2.16 16 18 C -0.09 -1.72 4.74 -25.62 -0.12 -1.84 16 19 H 0.04 0.61 8.11 -51.93 -0.42 0.19 16 20 H 0.05 0.63 8.01 -51.93 -0.42 0.22 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.76 7.63 -51.93 -0.40 0.36 16 23 H 0.05 0.96 6.98 -51.93 -0.36 0.60 16 24 H 0.06 1.16 6.59 -51.93 -0.34 0.82 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.97 7.47 -51.93 -0.39 0.58 16 27 H 0.07 1.75 5.72 -51.93 -0.30 1.45 16 28 H 0.36 9.25 5.96 45.56 0.27 9.52 16 29 H 0.27 7.42 3.90 -40.82 -0.16 7.26 16 30 H 0.05 1.21 7.52 -51.93 -0.39 0.82 16 31 H 0.05 1.00 6.63 -51.93 -0.34 0.65 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.04 0.61 7.96 -51.93 -0.41 0.20 16 LS Contribution 240.65 15.07 3.63 3.63 Total: -1.00 -28.20 240.65 -6.43 -34.62 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -4.39 Total: 8.09 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: -0.96 Total: -26.06 kcal Atomic # 7 Polarization: -26.05 SS G_CDS: 0.69 Total: -25.36 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.30 Total: -14.72 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.08 Total: 19.80 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.20 -6.43 -34.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879486.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.959 kcal (2) G-P(sol) polarization free energy of solvation -28.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds