Wall clock time and date at job start Mon Mar 30 2020 02:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 108.85747 * 2 1 4 4 C 1.50476 * 108.87492 * 118.46086 * 2 1 3 5 5 C 1.54246 * 108.51675 * 214.92766 * 4 2 1 6 6 C 1.45545 * 112.40907 * 280.01472 * 5 4 2 7 7 C 1.54241 * 112.40717 * 61.93132 * 6 5 4 8 8 O 1.42903 * 109.78562 * 39.82372 * 7 6 5 9 9 C 1.50700 * 109.62627 * 160.30263 * 7 6 5 10 10 H 1.08007 * 119.99783 * 113.55854 * 9 7 6 11 11 C 1.37879 * 120.00483 * 293.56328 * 9 7 6 12 12 N 1.31509 * 119.99787 * 4.77820 * 11 9 7 13 13 Si 1.86796 * 119.99997 * 184.50895 * 11 9 7 14 14 H 1.48503 * 109.46857 * 270.27195 * 13 11 9 15 15 H 1.48496 * 109.47089 * 30.27223 * 13 11 9 16 16 H 1.48498 * 109.47145 * 150.27620 * 13 11 9 17 17 C 1.50473 * 108.52466 * 280.01720 * 7 6 5 18 18 C 1.54062 * 108.87756 * 241.43483 * 2 1 3 19 19 H 1.09004 * 109.47101 * 178.56037 * 1 2 3 20 20 H 1.08996 * 109.46904 * 298.56004 * 1 2 3 21 21 H 1.08995 * 109.46978 * 58.56201 * 1 2 3 22 22 H 1.08994 * 109.63275 * 334.64063 * 4 2 1 23 23 H 1.09007 * 109.63027 * 95.22299 * 4 2 1 24 24 H 1.08996 * 108.89321 * 40.76369 * 5 4 2 25 25 H 1.08998 * 108.89282 * 159.35212 * 5 4 2 26 26 H 1.09005 * 108.89356 * 301.17847 * 6 5 4 27 27 H 1.08993 * 108.89642 * 182.69003 * 6 5 4 28 28 H 0.96703 * 113.99903 * 54.03775 * 8 7 6 29 29 H 0.96999 * 119.99945 * 5.25716 * 12 11 9 30 30 H 1.09006 * 108.87329 * 214.92368 * 17 7 6 31 31 H 1.08997 * 108.87457 * 333.37224 * 17 7 6 32 32 H 1.09002 * 108.81133 * 76.64630 * 18 2 1 33 33 H 1.08998 * 108.81642 * 318.37183 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8823 1.0315 0.0000 4 6 2.0168 -0.6785 1.2518 5 6 3.3099 0.0216 1.7173 6 6 4.4788 -0.4178 0.9696 7 6 4.3714 -0.0922 -0.5342 8 8 3.7861 1.1997 -0.7089 9 6 5.7439 -0.1144 -1.1562 10 1 5.9943 -0.8711 -1.8851 11 6 6.6800 0.8312 -0.7948 12 7 6.4084 1.6940 0.1598 13 14 8.3369 0.8819 -1.6559 14 1 9.2967 0.0083 -0.9342 15 1 8.1837 0.4013 -3.0526 16 1 8.8474 2.2763 -1.6653 17 6 3.5033 -1.1331 -1.1878 18 6 2.0285 -0.6970 -1.2803 19 1 -0.3633 -1.0274 -0.0258 20 1 -0.3633 0.4913 0.9026 21 1 -0.3633 0.5360 -0.8768 22 1 1.2575 -0.6002 2.0298 23 1 2.2237 -1.7282 1.0426 24 1 3.1939 1.0979 1.5903 25 1 3.4671 -0.1938 2.7741 26 1 4.5905 -1.4953 1.0904 27 1 5.3627 0.0744 1.3751 28 1 4.2372 1.9046 -0.2243 29 1 5.5816 1.6180 0.6614 30 1 3.8783 -1.3242 -2.1934 31 1 3.5628 -2.0553 -0.6100 32 1 1.9167 -0.0112 -2.1201 33 1 1.4125 -1.5773 -1.4639 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879486.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:55 Heat of formation + Delta-G solvation = -88.261339 kcal Electronic energy + Delta-G solvation = -13950.984409 eV Core-core repulsion = 11782.089052 eV Total energy + Delta-G solvation = -2168.895357 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.71959 -36.84196 -34.15953 -33.54877 -32.64817 -28.33813 -27.06736 -24.69885 -23.35468 -21.03206 -20.22154 -19.73851 -16.78528 -16.22110 -16.00664 -15.77017 -15.63765 -14.49218 -14.23498 -13.86656 -13.76363 -13.55354 -13.22394 -12.78360 -12.65166 -12.35123 -12.03741 -11.97992 -11.82515 -11.57627 -11.30318 -11.17500 -11.08076 -10.72912 -10.48169 -9.79510 -8.53089 -6.39167 1.51155 1.57959 1.76864 2.54015 3.07313 3.85425 3.90425 4.05324 4.12957 4.35799 4.42313 4.44651 4.58226 4.67057 4.81751 4.91083 4.92056 4.99918 5.08789 5.19449 5.26466 5.31358 5.43284 5.53230 5.57072 5.60979 5.65513 5.86874 6.07941 6.19555 6.60660 7.19264 7.40272 8.74128 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.059912 B = 0.011708 C = 0.011021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.236399 B = 2391.002912 C = 2540.086687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.066 0.934 4 C -0.100 4.100 5 C -0.107 4.107 6 C -0.140 4.140 7 C 0.232 3.768 8 O -0.577 6.577 9 C -0.634 4.634 10 H 0.040 0.960 11 C -0.014 4.014 12 N -0.933 5.933 13 Si 1.110 2.890 14 H -0.275 1.275 15 H -0.280 1.280 16 H -0.281 1.281 17 C -0.093 4.093 18 C -0.086 4.086 19 H 0.060 0.940 20 H 0.061 0.939 21 H 0.049 0.951 22 H 0.078 0.922 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.037 0.963 28 H 0.355 0.645 29 H 0.268 0.732 30 H 0.035 0.965 31 H 0.059 0.941 32 H 0.038 0.962 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.984 -3.956 1.581 9.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.137 4.137 5 C -0.144 4.144 6 C -0.178 4.178 7 C 0.193 3.807 8 O -0.384 6.384 9 C -0.672 4.672 10 H 0.058 0.942 11 C -0.213 4.213 12 N -0.576 5.576 13 Si 0.933 3.067 14 H -0.200 1.200 15 H -0.205 1.205 16 H -0.207 1.207 17 C -0.130 4.130 18 C -0.124 4.124 19 H 0.079 0.921 20 H 0.080 0.920 21 H 0.068 0.932 22 H 0.096 0.904 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.203 0.797 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.023 -3.475 1.107 7.914 hybrid contribution -0.561 -0.502 0.353 0.832 sum -7.585 -3.977 1.459 8.688 Atomic orbital electron populations 1.21913 0.94321 1.01869 1.01592 1.20977 0.95590 1.00698 0.93855 0.91564 1.21341 0.96061 0.99079 0.97211 1.20387 0.95405 1.00053 0.98572 1.21141 0.98031 0.99933 0.98700 1.18630 0.90177 0.81244 0.90683 1.86374 1.57861 1.18988 1.75223 1.23007 1.00038 1.17418 1.26728 0.94202 1.27004 1.06234 0.91943 0.96147 1.70977 1.28330 1.36659 1.21599 0.83016 0.71773 0.76726 0.75180 1.20036 1.20530 1.20664 1.21289 0.95416 0.97161 0.99182 1.21613 0.94025 0.99048 0.97692 0.92081 0.92038 0.93204 0.90384 0.92453 0.93588 0.92617 0.93660 0.94412 0.79728 0.91703 0.94567 0.92285 0.94321 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.84 71.98 0.64 -2.99 16 2 C -0.09 -3.12 2.18 -11.25 -0.02 -3.14 16 3 H 0.07 2.60 5.32 -2.39 -0.01 2.59 16 4 C -0.10 -3.19 5.13 30.20 0.15 -3.04 16 5 C -0.11 -4.04 5.18 28.74 0.15 -3.90 16 6 C -0.14 -6.37 3.92 28.74 0.11 -6.26 16 7 C 0.23 11.48 0.64 -11.94 -0.01 11.47 16 8 O -0.58 -29.24 8.62 -148.98 -1.28 -30.53 16 9 C -0.63 -35.74 8.07 25.60 0.21 -35.54 16 10 H 0.04 2.27 7.52 -2.91 -0.02 2.25 16 11 C -0.01 -0.80 5.14 84.66 0.43 -0.36 16 12 N -0.93 -53.85 12.42 21.45 0.27 -53.58 16 13 Si 1.11 50.27 29.91 68.60 2.05 52.32 16 14 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 15 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 17 C -0.09 -4.04 4.82 30.14 0.15 -3.89 16 18 C -0.09 -3.16 4.74 31.31 0.15 -3.01 16 19 H 0.06 1.40 8.11 -2.39 -0.02 1.38 16 20 H 0.06 1.42 8.01 -2.39 -0.02 1.40 16 21 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.08 2.08 7.63 -2.39 -0.02 2.06 16 23 H 0.06 1.82 6.98 -2.38 -0.02 1.81 16 24 H 0.05 1.84 6.59 -2.39 -0.02 1.83 16 25 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.04 1.99 7.47 -2.38 -0.02 1.98 16 27 H 0.04 1.94 5.72 -2.39 -0.01 1.92 16 28 H 0.35 18.67 5.96 -74.06 -0.44 18.23 16 29 H 0.27 15.09 3.90 -92.71 -0.36 14.73 16 30 H 0.04 1.65 7.52 -2.38 -0.02 1.63 16 31 H 0.06 2.39 6.63 -2.39 -0.02 2.37 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.97 7.96 -2.39 -0.02 1.95 16 Total: -1.00 -60.08 240.65 4.04 -56.04 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 1.05 Total: 26.40 kcal Atomic # 6 Polarization: -52.61 SS G_CDS: 1.96 Total: -50.65 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: 0.27 Total: -53.58 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -1.28 Total: -30.53 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.05 Total: 52.32 kcal Total: -60.08 4.04 -56.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879486.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.220 kcal (2) G-P(sol) polarization free energy of solvation -60.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds