Wall clock time and date at job start Mon Mar 30 2020 01:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46992 * 2 1 4 4 C 1.53004 * 109.46876 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.47319 * 299.99766 * 4 3 2 6 6 C 1.53004 * 109.47319 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47285 * 300.00244 * 6 5 4 8 8 O 1.42896 * 109.46914 * 60.00351 * 6 5 4 9 9 C 1.50700 * 109.47208 * 180.02562 * 6 5 4 10 10 H 1.08002 * 119.99770 * 0.02562 * 9 6 5 11 11 C 1.37871 * 120.00083 * 180.02562 * 9 6 5 12 12 N 1.31514 * 120.00147 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 120.00278 * 180.02562 * 11 9 6 14 14 H 1.48494 * 109.47228 * 179.97438 * 13 11 9 15 15 H 1.48501 * 109.46793 * 300.00001 * 13 11 9 16 16 H 1.48500 * 109.47000 * 60.00094 * 13 11 9 17 17 C 1.53004 * 109.47082 * 59.99989 * 5 4 3 18 18 C 1.52996 * 109.47169 * 299.99952 * 17 5 4 19 19 H 1.09005 * 109.47130 * 59.99829 * 1 2 3 20 20 H 1.09000 * 109.47439 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47408 * 300.00137 * 1 2 3 22 22 H 1.08998 * 109.47408 * 239.99863 * 2 1 3 23 23 H 1.08998 * 109.47126 * 60.00264 * 3 2 1 24 24 H 1.08996 * 109.47462 * 299.99809 * 3 2 1 25 25 H 1.09009 * 109.46730 * 179.97438 * 4 3 2 26 26 H 1.08998 * 109.47285 * 60.00009 * 4 3 2 27 27 H 1.08998 * 109.47610 * 300.00082 * 5 4 3 28 28 H 0.96699 * 114.00348 * 60.00046 * 8 6 5 29 29 H 0.97005 * 119.99661 * 359.97438 * 12 11 9 30 30 H 1.08998 * 109.46853 * 60.00166 * 17 5 4 31 31 H 1.09005 * 109.47449 * 179.97438 * 17 5 4 32 32 H 1.08998 * 109.47408 * 299.99874 * 18 17 5 33 33 H 1.08994 * 109.47190 * 179.97438 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0794 0.7215 1.2502 6 6 5.6095 0.7220 1.2511 7 1 5.9736 0.2083 0.3614 8 8 6.0853 2.0694 1.2515 9 6 6.1113 0.0113 2.4816 10 1 5.4092 -0.4000 3.1917 11 6 7.4667 -0.1138 2.7009 12 7 8.3217 0.3875 1.8364 13 14 8.0888 -0.9955 4.2258 14 1 9.5738 -0.9948 4.2267 15 1 7.5922 -0.2970 5.4385 16 1 7.5950 -2.3959 4.2239 17 6 3.5694 -0.7210 1.2502 18 6 2.0395 -0.7210 1.2496 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.8933 -0.5138 -0.8899 23 1 1.6766 1.9563 0.8900 24 1 1.6767 1.9563 -0.8900 25 1 3.9333 2.4702 0.0002 26 1 3.9337 0.9285 -0.8891 27 1 3.7158 1.2354 2.1399 28 1 5.7993 2.5874 2.0163 29 1 7.9987 0.8450 1.0444 30 1 3.9331 -1.2350 0.3605 31 1 3.9328 -1.2349 2.1402 32 1 1.6757 -0.2071 2.1394 33 1 1.6761 -1.7486 1.2492 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879599.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:16 Heat of formation + Delta-G solvation = -98.936467 kcal Electronic energy + Delta-G solvation = -13280.990554 eV Core-core repulsion = 11111.632289 eV Total energy + Delta-G solvation = -2169.358265 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.61757 -35.74668 -32.10237 -32.04451 -30.25120 -27.37248 -24.75258 -22.25038 -21.97172 -20.05518 -19.25991 -17.12072 -15.38456 -14.68054 -13.97985 -13.88822 -13.68000 -13.45194 -13.10149 -12.66337 -12.12341 -11.88714 -11.74792 -11.55944 -10.91008 -10.76351 -10.57361 -10.46298 -10.37348 -10.08033 -9.96796 -9.71902 -9.50288 -8.90464 -8.40549 -7.87274 -6.27988 -4.10230 3.44293 3.45514 3.64687 4.55463 5.00027 5.05564 5.17669 5.39129 5.55263 5.60830 5.83223 5.85625 5.90714 5.98708 5.99442 6.01802 6.08556 6.23553 6.35218 6.41364 6.53628 6.61273 6.66858 6.80758 6.92346 7.03848 7.13060 7.63644 8.11510 8.43449 8.93173 9.19060 9.74982 11.11236 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.054092 B = 0.009481 C = 0.008408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.513411 B = 2952.632579 C = 3329.400890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.111 4.111 4 C -0.112 4.112 5 C -0.101 4.101 6 C 0.215 3.785 7 H 0.045 0.955 8 O -0.584 6.584 9 C -0.642 4.642 10 H 0.050 0.950 11 C 0.031 3.969 12 N -0.896 5.896 13 Si 1.064 2.936 14 H -0.283 1.283 15 H -0.289 1.289 16 H -0.289 1.289 17 C -0.102 4.102 18 C -0.113 4.113 19 H 0.049 0.951 20 H 0.050 0.950 21 H 0.051 0.949 22 H 0.065 0.935 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.352 0.648 29 H 0.283 0.717 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.308 -0.413 -1.758 12.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.149 4.149 4 C -0.149 4.149 5 C -0.120 4.120 6 C 0.158 3.842 7 H 0.063 0.937 8 O -0.388 6.388 9 C -0.680 4.680 10 H 0.068 0.932 11 C -0.177 4.177 12 N -0.531 5.531 13 Si 0.892 3.108 14 H -0.208 1.208 15 H -0.215 1.215 16 H -0.215 1.215 17 C -0.140 4.140 18 C -0.151 4.151 19 H 0.068 0.932 20 H 0.069 0.931 21 H 0.070 0.930 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.196 0.804 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.658 -1.070 -1.552 10.824 hybrid contribution -1.734 0.530 -0.245 1.830 sum -12.393 -0.540 -1.798 12.534 Atomic orbital electron populations 1.21841 0.96071 1.01132 1.01240 1.21150 0.94500 0.96667 0.98816 1.21592 0.96775 0.95733 1.00756 1.21553 0.93702 1.00885 0.98772 1.21705 0.99074 0.95032 0.96145 1.19578 0.87172 0.80378 0.97077 0.93705 1.86458 1.78139 1.26231 1.47989 1.22486 0.94517 1.41764 1.09255 0.93162 1.25762 0.93480 0.96026 1.02428 1.70633 1.37732 1.32976 1.11783 0.83646 0.76240 0.75911 0.74973 1.20828 1.21520 1.21529 1.21425 0.92929 0.97321 1.02324 1.21633 0.97160 0.99144 0.97120 0.93179 0.93097 0.92985 0.91652 0.92570 0.93013 0.92052 0.92939 0.92641 0.80360 0.90497 0.92987 0.90961 0.92592 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.19 37.16 0.34 -1.34 16 2 C -0.09 -1.30 2.72 -90.62 -0.25 -1.55 16 3 C -0.11 -1.64 5.20 -26.73 -0.14 -1.78 16 4 C -0.11 -2.00 5.06 -26.73 -0.14 -2.14 16 5 C -0.10 -2.06 1.92 -90.62 -0.17 -2.23 16 6 C 0.21 5.43 2.02 -27.88 -0.06 5.37 16 7 H 0.05 1.25 8.01 -51.93 -0.42 0.83 16 8 O -0.58 -14.86 11.34 -35.23 -0.40 -15.26 16 9 C -0.64 -17.81 8.03 -34.44 -0.28 -18.09 16 10 H 0.05 1.37 6.71 -52.49 -0.35 1.02 16 11 C 0.03 0.90 5.40 -17.82 -0.10 0.81 16 12 N -0.90 -27.74 13.53 55.43 0.75 -26.99 16 13 Si 1.06 25.26 29.90 -169.99 -5.08 20.18 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 15 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 17 C -0.10 -1.94 4.95 -26.73 -0.13 -2.08 16 18 C -0.11 -1.74 5.20 -26.73 -0.14 -1.88 16 19 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 1.13 7.68 -51.92 -0.40 0.73 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.35 8.06 9.04 45.56 0.41 8.47 16 29 H 0.28 8.94 6.47 -40.82 -0.26 8.67 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.49 6.62 -51.93 -0.34 1.15 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 259.87 15.07 3.92 3.92 Total: -1.00 -30.00 259.87 -6.68 -36.68 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.81 Total: 6.38 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: -1.05 Total: -24.90 kcal Atomic # 7 Polarization: -27.74 SS G_CDS: 0.75 Total: -26.99 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.40 Total: -15.26 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.08 Total: 20.18 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.00 -6.68 -36.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879599.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.257 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds