Wall clock time and date at job start Mon Mar 30 2020 01:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46992 * 2 1 4 4 C 1.53004 * 109.46876 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.47319 * 299.99766 * 4 3 2 6 6 C 1.53004 * 109.47319 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47285 * 300.00244 * 6 5 4 8 8 O 1.42896 * 109.46914 * 60.00351 * 6 5 4 9 9 C 1.50700 * 109.47208 * 180.02562 * 6 5 4 10 10 H 1.08002 * 119.99770 * 0.02562 * 9 6 5 11 11 C 1.37871 * 120.00083 * 180.02562 * 9 6 5 12 12 N 1.31514 * 120.00147 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 120.00278 * 180.02562 * 11 9 6 14 14 H 1.48494 * 109.47228 * 179.97438 * 13 11 9 15 15 H 1.48501 * 109.46793 * 300.00001 * 13 11 9 16 16 H 1.48500 * 109.47000 * 60.00094 * 13 11 9 17 17 C 1.53004 * 109.47082 * 59.99989 * 5 4 3 18 18 C 1.52996 * 109.47169 * 299.99952 * 17 5 4 19 19 H 1.09005 * 109.47130 * 59.99829 * 1 2 3 20 20 H 1.09000 * 109.47439 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47408 * 300.00137 * 1 2 3 22 22 H 1.08998 * 109.47408 * 239.99863 * 2 1 3 23 23 H 1.08998 * 109.47126 * 60.00264 * 3 2 1 24 24 H 1.08996 * 109.47462 * 299.99809 * 3 2 1 25 25 H 1.09009 * 109.46730 * 179.97438 * 4 3 2 26 26 H 1.08998 * 109.47285 * 60.00009 * 4 3 2 27 27 H 1.08998 * 109.47610 * 300.00082 * 5 4 3 28 28 H 0.96699 * 114.00348 * 60.00046 * 8 6 5 29 29 H 0.97005 * 119.99661 * 359.97438 * 12 11 9 30 30 H 1.08998 * 109.46853 * 60.00166 * 17 5 4 31 31 H 1.09005 * 109.47449 * 179.97438 * 17 5 4 32 32 H 1.08998 * 109.47408 * 299.99874 * 18 17 5 33 33 H 1.08994 * 109.47190 * 179.97438 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0794 0.7215 1.2502 6 6 5.6095 0.7220 1.2511 7 1 5.9736 0.2083 0.3614 8 8 6.0853 2.0694 1.2515 9 6 6.1113 0.0113 2.4816 10 1 5.4092 -0.4000 3.1917 11 6 7.4667 -0.1138 2.7009 12 7 8.3217 0.3875 1.8364 13 14 8.0888 -0.9955 4.2258 14 1 9.5738 -0.9948 4.2267 15 1 7.5922 -0.2970 5.4385 16 1 7.5950 -2.3959 4.2239 17 6 3.5694 -0.7210 1.2502 18 6 2.0395 -0.7210 1.2496 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.8933 -0.5138 -0.8899 23 1 1.6766 1.9563 0.8900 24 1 1.6767 1.9563 -0.8900 25 1 3.9333 2.4702 0.0002 26 1 3.9337 0.9285 -0.8891 27 1 3.7158 1.2354 2.1399 28 1 5.7993 2.5874 2.0163 29 1 7.9987 0.8450 1.0444 30 1 3.9331 -1.2350 0.3605 31 1 3.9328 -1.2349 2.1402 32 1 1.6757 -0.2071 2.1394 33 1 1.6761 -1.7486 1.2492 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879599.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:15 Heat of formation + Delta-G solvation = -118.221994 kcal Electronic energy + Delta-G solvation = -13281.826837 eV Core-core repulsion = 11111.632289 eV Total energy + Delta-G solvation = -2170.194548 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.11636 -37.57428 -34.27961 -33.54185 -31.63185 -28.98798 -26.50753 -24.00240 -23.43356 -21.56163 -20.65794 -19.25630 -17.19144 -16.31121 -15.77764 -15.29627 -15.16424 -15.07473 -14.64063 -14.33236 -13.76059 -13.36654 -13.06828 -12.97580 -12.60752 -12.27040 -12.20009 -11.98766 -11.90990 -11.75004 -11.58896 -11.20172 -11.01416 -10.70183 -10.58490 -9.90490 -8.57855 -6.41278 1.51680 1.59517 1.78665 2.57035 3.18794 3.76727 3.80910 3.94229 4.03359 4.22503 4.40417 4.55474 4.58957 4.66770 4.67976 4.74866 4.85339 5.00712 5.04603 5.15926 5.20946 5.22414 5.27905 5.34817 5.47652 5.52825 5.59764 5.72223 5.96069 6.18786 6.59831 7.19284 7.54464 8.78795 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.054092 B = 0.009481 C = 0.008408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.513411 B = 2952.632579 C = 3329.400890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 C -0.104 4.104 4 C -0.107 4.107 5 C -0.091 4.091 6 C 0.212 3.788 7 H 0.010 0.990 8 O -0.595 6.595 9 C -0.646 4.646 10 H 0.053 0.947 11 C -0.024 4.024 12 N -0.927 5.927 13 Si 1.113 2.887 14 H -0.287 1.287 15 H -0.269 1.269 16 H -0.271 1.271 17 C -0.100 4.100 18 C -0.106 4.106 19 H 0.062 0.938 20 H 0.060 0.940 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.362 0.638 29 H 0.265 0.735 30 H 0.040 0.960 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.442 -0.762 -1.060 14.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 C -0.142 4.142 4 C -0.145 4.145 5 C -0.110 4.110 6 C 0.155 3.845 7 H 0.027 0.973 8 O -0.400 6.400 9 C -0.683 4.683 10 H 0.072 0.928 11 C -0.225 4.225 12 N -0.563 5.563 13 Si 0.935 3.065 14 H -0.213 1.213 15 H -0.194 1.194 16 H -0.196 1.196 17 C -0.138 4.138 18 C -0.143 4.143 19 H 0.081 0.919 20 H 0.079 0.921 21 H 0.076 0.924 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.208 0.792 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.825 -1.413 -0.856 12.931 hybrid contribution -1.064 0.661 -0.497 1.348 sum -13.889 -0.752 -1.353 13.975 Atomic orbital electron populations 1.21776 0.93539 1.02179 1.02180 1.21149 0.96545 0.95625 0.97768 1.21555 0.93707 0.96831 1.02088 1.21481 0.96502 0.99674 0.96800 1.21531 0.95386 0.96597 0.97486 1.19520 0.90479 0.79830 0.94681 0.97256 1.86401 1.78755 1.26282 1.48596 1.22855 0.94673 1.41064 1.09735 0.92830 1.27300 0.94408 0.96139 1.04609 1.70784 1.38166 1.35127 1.12245 0.83009 0.75520 0.75909 0.72096 1.21271 1.19390 1.19589 1.21370 0.96042 0.95698 1.00701 1.21579 0.93808 1.00664 0.98262 0.91913 0.92066 0.92422 0.92012 0.91895 0.90995 0.92895 0.93990 0.92692 0.79177 0.92450 0.94082 0.93130 0.92032 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.19 71.98 0.66 -2.00 16 2 C -0.09 -2.32 2.72 -10.79 -0.03 -2.35 16 3 C -0.10 -2.82 5.20 30.60 0.16 -2.66 16 4 C -0.11 -3.78 5.06 30.59 0.15 -3.62 16 5 C -0.09 -3.73 1.92 -10.79 -0.02 -3.75 16 6 C 0.21 11.00 2.02 29.85 0.06 11.06 16 7 H 0.01 0.56 8.01 -2.39 -0.02 0.54 16 8 O -0.59 -31.06 11.34 -148.98 -1.69 -32.75 16 9 C -0.65 -36.22 8.03 25.60 0.21 -36.02 16 10 H 0.05 2.92 6.71 -2.91 -0.02 2.90 16 11 C -0.02 -1.37 5.40 84.65 0.46 -0.91 16 12 N -0.93 -58.78 13.53 21.45 0.29 -58.49 16 13 Si 1.11 50.59 29.90 68.60 2.05 52.64 16 14 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 15 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 16 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 17 C -0.10 -3.77 4.95 30.59 0.15 -3.62 16 18 C -0.11 -3.00 5.20 30.59 0.16 -2.84 16 19 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 20 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 21 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.05 1.93 7.68 -2.38 -0.02 1.91 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.36 16.86 9.04 -74.06 -0.67 16.19 16 29 H 0.27 17.41 6.47 -92.70 -0.60 16.81 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 2.09 6.62 -2.38 -0.02 2.07 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -65.09 259.87 3.18 -61.92 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.56 Total: 23.38 kcal Atomic # 6 Polarization: -48.66 SS G_CDS: 1.96 Total: -46.71 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.29 Total: -58.49 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -1.69 Total: -32.75 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 2.05 Total: 52.64 kcal Total: -65.09 3.18 -61.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879599.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.306 kcal (2) G-P(sol) polarization free energy of solvation -65.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds