Wall clock time and date at job start Mon Mar 30 2020 02:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46986 * 2 1 4 4 C 1.53006 * 109.46977 * 240.00260 * 2 1 3 5 5 C 1.52997 * 109.47127 * 299.99541 * 4 2 1 6 6 C 1.53000 * 109.47060 * 300.00449 * 5 4 2 7 7 C 1.52996 * 109.47328 * 60.00126 * 6 5 4 8 8 H 1.08992 * 109.47554 * 59.99639 * 7 6 5 9 9 C 1.52997 * 109.46975 * 180.02562 * 7 6 5 10 10 H 1.09002 * 109.47045 * 179.97438 * 9 7 6 11 11 O 1.42906 * 109.47485 * 59.99869 * 9 7 6 12 12 C 1.50698 * 109.47342 * 299.99900 * 9 7 6 13 13 H 1.08003 * 120.00057 * 359.97438 * 12 9 7 14 14 C 1.37876 * 120.00356 * 180.02562 * 12 9 7 15 15 N 1.31519 * 119.99989 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 120.00260 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.47297 * 59.99472 * 16 14 12 18 18 H 1.48500 * 109.47454 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46926 * 299.99854 * 16 14 12 20 20 C 1.52997 * 109.47415 * 120.00118 * 2 1 3 21 21 H 1.08992 * 109.47063 * 299.99832 * 1 2 3 22 22 H 1.08996 * 109.47407 * 60.00229 * 1 2 3 23 23 H 1.09004 * 109.46733 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46505 * 179.97438 * 4 2 1 25 25 H 1.08996 * 109.46884 * 60.00293 * 4 2 1 26 26 H 1.09002 * 109.47153 * 180.02562 * 5 4 2 27 27 H 1.09001 * 109.46832 * 60.00321 * 5 4 2 28 28 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 30 30 H 0.96698 * 113.99404 * 299.99865 * 11 9 7 31 31 H 0.96996 * 119.99885 * 180.02562 * 15 14 12 32 32 H 1.09002 * 109.47045 * 300.00068 * 20 2 1 33 33 H 1.09001 * 109.47375 * 179.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5301 -2.1637 -1.2493 6 6 2.0401 -2.8849 -0.0001 7 6 1.5301 -2.1638 1.2491 8 1 0.4402 -2.1638 1.2492 9 6 2.0407 -2.8846 2.4983 10 1 1.6777 -2.3706 3.3883 11 8 3.4697 -2.8841 2.4981 12 6 1.5390 -4.3057 2.4987 13 1 0.9177 -4.6592 1.6890 14 6 1.8722 -5.1542 3.5330 15 7 2.6284 -4.7237 4.5192 16 14 1.2497 -6.9154 3.5337 17 1 1.7446 -7.6159 2.3214 18 1 1.7454 -7.6152 4.7461 19 1 -0.2353 -6.9155 3.5339 20 6 2.0401 -0.7212 1.2492 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 -0.7208 -1.2495 25 1 1.6767 -0.2073 -2.1392 26 1 1.8938 -2.6777 -2.1391 27 1 0.4401 -2.1637 -1.2493 28 1 1.6772 -3.9128 -0.0004 29 1 3.1301 -2.8849 -0.0001 30 1 3.8630 -3.3257 1.7330 31 1 2.8631 -5.3208 5.2466 32 1 1.6768 -0.2074 2.1392 33 1 3.1301 -0.7216 1.2489 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879612.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:53 Heat of formation + Delta-G solvation = -86.646672 kcal Electronic energy + Delta-G solvation = -13491.816000 eV Core-core repulsion = 11322.990661 eV Total energy + Delta-G solvation = -2168.825339 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.85728 -35.32488 -32.04416 -31.28845 -30.35980 -26.63562 -26.10910 -23.02109 -21.78039 -19.87556 -17.95598 -16.73619 -15.35602 -14.56352 -14.33228 -14.11528 -13.58498 -13.34385 -13.12542 -12.45467 -12.02976 -11.66757 -11.47590 -11.14101 -11.01701 -10.87919 -10.63187 -10.51703 -10.39179 -10.02788 -9.88948 -9.51504 -9.38207 -8.73184 -8.46068 -7.92315 -5.93281 -4.10025 3.31837 3.37287 3.38952 4.43947 5.16011 5.17806 5.25492 5.33698 5.68935 5.77779 5.80038 5.95688 6.03307 6.11416 6.19272 6.22724 6.29520 6.32294 6.42810 6.46430 6.67392 6.73092 6.77391 6.88141 7.09861 7.15218 7.29321 7.83267 7.94094 8.29621 8.92588 9.47747 9.67007 11.10932 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051935 B = 0.010159 C = 0.009608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.006791 B = 2755.640783 C = 2913.394411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 H 0.057 0.943 4 C -0.110 4.110 5 C -0.121 4.121 6 C -0.106 4.106 7 C -0.110 4.110 8 H 0.062 0.938 9 C 0.232 3.768 10 H 0.051 0.949 11 O -0.566 6.566 12 C -0.565 4.565 13 H 0.056 0.944 14 C 0.077 3.923 15 N -0.862 5.862 16 Si 0.885 3.115 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.105 4.105 21 H 0.049 0.951 22 H 0.043 0.957 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.342 0.658 31 H 0.259 0.741 32 H 0.052 0.948 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.145 6.072 -9.277 11.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 H 0.076 0.924 4 C -0.148 4.148 5 C -0.158 4.158 6 C -0.144 4.144 7 C -0.129 4.129 8 H 0.080 0.920 9 C 0.175 3.825 10 H 0.069 0.931 11 O -0.369 6.369 12 C -0.603 4.603 13 H 0.074 0.926 14 C -0.129 4.129 15 N -0.499 5.499 16 Si 0.713 3.287 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.142 4.142 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.186 0.814 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.155 6.365 -8.524 10.854 hybrid contribution -0.353 -1.336 -0.438 1.450 sum -2.508 5.029 -8.962 10.578 Atomic orbital electron populations 1.21924 0.95914 1.02260 1.00472 1.21121 0.95579 0.98380 0.95989 0.92448 1.21524 1.00240 0.96127 0.96882 1.21613 1.00554 0.95313 0.98351 1.21474 1.00054 0.99585 0.93252 1.21857 0.99820 0.93611 0.97595 0.91957 1.19373 0.78502 0.93557 0.91093 0.93081 1.86542 1.22364 1.79849 1.48144 1.21689 1.33568 0.97409 1.07652 0.92583 1.25063 0.94301 0.98261 0.95231 1.70072 1.34582 1.35428 1.09775 0.86802 0.79236 0.85289 0.77401 1.20240 1.21318 1.20259 1.21555 1.00789 0.96274 0.95600 0.93165 0.93776 0.91702 0.92422 0.93203 0.93178 0.92313 0.91266 0.92809 0.81394 0.93104 0.92970 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.50 37.16 0.32 -1.75 16 2 C -0.09 -1.36 3.19 -90.62 -0.29 -1.65 16 3 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.11 -1.54 5.45 -26.73 -0.15 -1.68 16 5 C -0.12 -1.82 5.65 -26.73 -0.15 -1.97 16 6 C -0.11 -1.94 4.64 -26.73 -0.12 -2.06 16 7 C -0.11 -2.21 1.77 -90.62 -0.16 -2.37 16 8 H 0.06 1.27 6.43 -51.93 -0.33 0.94 16 9 C 0.23 5.88 2.63 -27.89 -0.07 5.80 16 10 H 0.05 1.45 8.14 -51.93 -0.42 1.02 16 11 O -0.57 -14.66 12.01 -35.23 -0.42 -15.08 16 12 C -0.57 -15.43 8.03 -34.44 -0.28 -15.71 16 13 H 0.06 1.49 6.71 -52.48 -0.35 1.14 16 14 C 0.08 2.17 5.40 -17.82 -0.10 2.07 16 15 N -0.86 -25.84 12.84 55.43 0.71 -25.13 16 16 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.10 -1.87 4.58 -26.73 -0.12 -2.00 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.96 4.81 -51.93 -0.25 0.71 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.87 6.43 -51.93 -0.33 0.54 16 28 H 0.07 1.37 6.62 -51.93 -0.34 1.03 16 29 H 0.05 0.98 6.78 -51.93 -0.35 0.62 16 30 H 0.34 8.00 7.33 45.56 0.33 8.33 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.17 7.68 -51.93 -0.40 0.78 16 LS Contribution 251.79 15.07 3.79 3.79 Total: -1.00 -29.39 251.79 -6.61 -36.00 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.55 Total: 5.38 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -1.12 Total: -21.32 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.71 Total: -25.13 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.42 Total: -15.08 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.39 -6.61 -36.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879612.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.644 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds