Wall clock time and date at job start Mon Mar 30 2020 02:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46986 * 2 1 4 4 C 1.53006 * 109.46977 * 240.00260 * 2 1 3 5 5 C 1.52997 * 109.47127 * 299.99541 * 4 2 1 6 6 C 1.53000 * 109.47060 * 300.00449 * 5 4 2 7 7 C 1.52996 * 109.47328 * 60.00126 * 6 5 4 8 8 H 1.08992 * 109.47554 * 59.99639 * 7 6 5 9 9 C 1.52997 * 109.46975 * 180.02562 * 7 6 5 10 10 H 1.09002 * 109.47045 * 179.97438 * 9 7 6 11 11 O 1.42906 * 109.47485 * 59.99869 * 9 7 6 12 12 C 1.50698 * 109.47342 * 299.99900 * 9 7 6 13 13 H 1.08003 * 120.00057 * 359.97438 * 12 9 7 14 14 C 1.37876 * 120.00356 * 180.02562 * 12 9 7 15 15 N 1.31519 * 119.99989 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 120.00260 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.47297 * 59.99472 * 16 14 12 18 18 H 1.48500 * 109.47454 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46926 * 299.99854 * 16 14 12 20 20 C 1.52997 * 109.47415 * 120.00118 * 2 1 3 21 21 H 1.08992 * 109.47063 * 299.99832 * 1 2 3 22 22 H 1.08996 * 109.47407 * 60.00229 * 1 2 3 23 23 H 1.09004 * 109.46733 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46505 * 179.97438 * 4 2 1 25 25 H 1.08996 * 109.46884 * 60.00293 * 4 2 1 26 26 H 1.09002 * 109.47153 * 180.02562 * 5 4 2 27 27 H 1.09001 * 109.46832 * 60.00321 * 5 4 2 28 28 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 30 30 H 0.96698 * 113.99404 * 299.99865 * 11 9 7 31 31 H 0.96996 * 119.99885 * 180.02562 * 15 14 12 32 32 H 1.09002 * 109.47045 * 300.00068 * 20 2 1 33 33 H 1.09001 * 109.47375 * 179.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5301 -2.1637 -1.2493 6 6 2.0401 -2.8849 -0.0001 7 6 1.5301 -2.1638 1.2491 8 1 0.4402 -2.1638 1.2492 9 6 2.0407 -2.8846 2.4983 10 1 1.6777 -2.3706 3.3883 11 8 3.4697 -2.8841 2.4981 12 6 1.5390 -4.3057 2.4987 13 1 0.9177 -4.6592 1.6890 14 6 1.8722 -5.1542 3.5330 15 7 2.6284 -4.7237 4.5192 16 14 1.2497 -6.9154 3.5337 17 1 1.7446 -7.6159 2.3214 18 1 1.7454 -7.6152 4.7461 19 1 -0.2353 -6.9155 3.5339 20 6 2.0401 -0.7212 1.2492 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 -0.7208 -1.2495 25 1 1.6767 -0.2073 -2.1392 26 1 1.8938 -2.6777 -2.1391 27 1 0.4401 -2.1637 -1.2493 28 1 1.6772 -3.9128 -0.0004 29 1 3.1301 -2.8849 -0.0001 30 1 3.8630 -3.3257 1.7330 31 1 2.8631 -5.3208 5.2466 32 1 1.6768 -0.2074 2.1392 33 1 3.1301 -0.7216 1.2489 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879612.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:53 Heat of formation + Delta-G solvation = -105.534099 kcal Electronic energy + Delta-G solvation = -13492.635020 eV Core-core repulsion = 11322.990661 eV Total energy + Delta-G solvation = -2169.644360 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.31983 -37.16941 -34.21710 -32.69818 -31.87734 -28.46366 -27.46156 -24.88310 -23.10937 -21.52038 -19.34011 -18.80162 -16.93692 -16.65440 -15.94234 -15.57226 -15.15963 -14.89155 -14.61504 -14.08037 -13.38533 -13.35074 -13.06518 -12.84394 -12.77255 -12.46928 -12.28409 -11.92292 -11.78459 -11.71445 -11.39819 -11.02405 -10.84454 -10.71975 -10.45663 -9.87781 -8.09471 -6.33495 1.39768 1.41319 1.49249 2.40412 3.15762 3.92346 3.93976 4.00418 4.31257 4.40923 4.52406 4.59450 4.65718 4.72349 4.80498 4.89333 4.92666 5.10981 5.15684 5.22881 5.26970 5.37898 5.44034 5.50856 5.57230 5.62802 5.69680 5.77776 5.91244 6.17736 6.78169 7.37374 7.59133 8.94810 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051935 B = 0.010159 C = 0.009608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.006791 B = 2755.640783 C = 2913.394411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 H 0.075 0.925 4 C -0.107 4.107 5 C -0.115 4.115 6 C -0.102 4.102 7 C -0.098 4.098 8 H 0.058 0.942 9 C 0.229 3.771 10 H 0.009 0.991 11 O -0.580 6.580 12 C -0.573 4.573 13 H 0.062 0.938 14 C 0.020 3.980 15 N -0.905 5.905 16 Si 0.955 3.045 17 H -0.267 1.267 18 H -0.287 1.287 19 H -0.269 1.269 20 C -0.101 4.101 21 H 0.047 0.953 22 H 0.068 0.932 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.352 0.648 31 H 0.259 0.741 32 H 0.039 0.961 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.807 6.182 -11.405 13.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.093 0.907 4 C -0.145 4.145 5 C -0.152 4.152 6 C -0.139 4.139 7 C -0.117 4.117 8 H 0.076 0.924 9 C 0.171 3.829 10 H 0.027 0.973 11 O -0.385 6.385 12 C -0.611 4.611 13 H 0.080 0.920 14 C -0.181 4.181 15 N -0.543 5.543 16 Si 0.780 3.220 17 H -0.192 1.192 18 H -0.213 1.213 19 H -0.194 1.194 20 C -0.139 4.139 21 H 0.066 0.934 22 H 0.087 0.913 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.197 0.803 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.825 6.477 -10.674 12.801 hybrid contribution -0.131 -1.334 0.255 1.365 sum -2.957 5.143 -10.419 11.989 Atomic orbital electron populations 1.21907 0.95112 1.01786 1.01644 1.21107 0.96216 0.98881 0.94444 0.90703 1.21525 1.00341 0.95255 0.97347 1.21567 1.00815 0.95923 0.96938 1.21398 0.99814 0.98699 0.94025 1.21625 0.99337 0.94741 0.95986 0.92374 1.19291 0.78327 0.93191 0.92048 0.97339 1.86481 1.22797 1.80104 1.49084 1.22063 1.33108 0.98372 1.07549 0.92032 1.25939 0.94510 1.02826 0.94844 1.70225 1.36365 1.37044 1.10646 0.85680 0.78875 0.79846 0.77582 1.19152 1.21257 1.19405 1.21491 1.00004 0.95062 0.97295 0.93415 0.91268 0.92962 0.92365 0.90408 0.91295 0.91870 0.93195 0.93068 0.80270 0.93234 0.94261 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 8.50 71.98 0.61 -3.09 16 2 C -0.09 -2.37 3.19 -10.79 -0.03 -2.41 16 3 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 4 C -0.11 -2.61 5.45 30.60 0.17 -2.44 16 5 C -0.12 -3.13 5.65 30.59 0.17 -2.96 16 6 C -0.10 -3.62 4.64 30.59 0.14 -3.48 16 7 C -0.10 -3.97 1.77 -10.80 -0.02 -3.98 16 8 H 0.06 2.38 6.43 -2.39 -0.02 2.37 16 9 C 0.23 11.95 2.63 29.85 0.08 12.03 16 10 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 11 O -0.58 -30.91 12.01 -148.98 -1.79 -32.70 16 12 C -0.57 -31.76 8.03 25.60 0.21 -31.55 16 13 H 0.06 3.28 6.71 -2.91 -0.02 3.26 16 14 C 0.02 1.15 5.40 84.65 0.46 1.61 16 15 N -0.90 -55.54 12.84 21.45 0.28 -55.26 16 16 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 20 C -0.10 -3.58 4.58 30.59 0.14 -3.44 16 21 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.05 1.44 4.81 -2.39 -0.01 1.43 16 24 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.06 1.68 6.43 -2.39 -0.02 1.67 16 28 H 0.05 1.94 6.62 -2.39 -0.02 1.93 16 29 H 0.05 1.82 6.78 -2.39 -0.02 1.80 16 30 H 0.35 16.80 7.33 -74.06 -0.54 16.26 16 31 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.92 7.68 -2.39 -0.02 1.90 16 Total: -1.00 -63.53 251.79 2.97 -60.56 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.54 Total: 21.01 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 1.92 Total: -39.72 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.28 Total: -55.26 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -1.79 Total: -32.70 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -63.53 2.97 -60.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879612.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.978 kcal (2) G-P(sol) polarization free energy of solvation -63.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds