Wall clock time and date at job start Mon Mar 30 2020 02:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86794 * 120.00475 * 2 1 4 4 H 1.48501 * 109.47354 * 240.00043 * 3 2 1 5 5 H 1.48510 * 109.46906 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47476 * 119.99201 * 3 2 1 7 7 C 1.37887 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99762 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00186 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47479 * 179.97438 * 9 7 2 11 11 C 1.46901 * 111.00106 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.47407 * 34.99725 * 11 10 9 13 13 C 1.53000 * 109.46769 * 274.99427 * 11 10 9 14 14 C 1.52997 * 109.47060 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47317 * 59.99960 * 14 13 11 16 16 C 1.53005 * 109.47159 * 300.00546 * 15 14 13 17 17 H 1.09002 * 109.46935 * 299.99411 * 16 15 14 18 18 N 1.46905 * 109.46858 * 179.97438 * 16 15 14 19 19 C 1.52997 * 109.47452 * 59.99536 * 16 15 14 20 20 H 0.96996 * 119.99815 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47457 * 59.99001 * 9 7 2 22 22 H 1.09003 * 109.46809 * 299.99760 * 9 7 2 23 23 H 1.00904 * 110.99568 * 303.95043 * 10 9 7 24 24 H 1.09002 * 109.47398 * 300.00295 * 13 11 10 25 25 H 1.09001 * 109.47194 * 60.00475 * 13 11 10 26 26 H 1.08996 * 109.47853 * 180.02562 * 14 13 11 27 27 H 1.09002 * 109.47153 * 300.00319 * 14 13 11 28 28 H 1.09000 * 109.47486 * 180.02562 * 15 14 13 29 29 H 1.09002 * 109.46716 * 60.00091 * 15 14 13 30 30 H 1.00898 * 110.99881 * 60.00141 * 18 16 15 31 31 H 1.00903 * 110.99188 * 183.95024 * 18 16 15 32 32 H 1.08993 * 109.47194 * 179.97438 * 19 16 15 33 33 H 1.09002 * 109.46695 * 59.99734 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5052 -4.9071 0.0011 12 1 0.5918 -4.8254 -0.5879 13 6 1.1522 -5.2950 1.4384 14 6 0.4233 -6.6403 1.4392 15 6 1.3295 -7.7117 0.8297 16 6 1.6827 -7.3237 -0.6076 17 1 0.7693 -7.2424 -1.1968 18 7 2.5533 -8.3523 -1.1926 19 6 2.4115 -5.9785 -0.6084 20 1 -0.4850 0.8400 -0.0004 21 1 0.6245 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8904 23 1 2.8403 -3.5487 -0.7809 24 1 2.0656 -5.3768 2.0275 25 1 0.5068 -4.5315 1.8728 26 1 0.1714 -6.9165 2.4630 27 1 -0.4901 -6.5589 0.8500 28 1 0.8101 -8.6700 0.8298 29 1 2.2430 -7.7931 1.4189 30 1 2.0946 -9.2509 -1.2034 31 1 2.8530 -8.0880 -2.1191 32 1 2.6635 -5.7024 -1.6322 33 1 3.3249 -6.0599 -0.0191 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086402485.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:28 Heat of formation + Delta-G solvation = -25.478107 kcal Electronic energy + Delta-G solvation = -12821.527758 eV Core-core repulsion = 10687.647638 eV Total energy + Delta-G solvation = -2133.880120 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.70131 -34.97356 -33.01723 -32.12401 -29.28392 -27.69547 -25.75341 -22.12725 -22.03021 -20.32870 -19.40327 -16.47488 -15.48370 -15.16037 -14.86126 -14.61586 -14.33771 -13.85945 -13.36955 -12.57392 -12.25046 -12.02313 -11.58689 -11.36248 -11.32844 -10.91781 -10.78502 -10.68301 -10.38349 -10.11413 -9.93553 -9.67252 -9.11790 -8.71662 -8.45566 -7.24852 -6.01041 -4.02836 3.35134 3.38644 3.42124 4.39721 4.46943 4.85969 4.93363 5.27199 5.34807 5.43476 5.49038 5.69317 5.72364 5.75049 5.80766 5.97964 6.13301 6.31581 6.35936 6.44310 6.54220 6.73019 6.83060 7.14325 7.31447 7.39213 7.45973 7.82209 8.17078 8.45502 8.66361 9.06752 9.61947 11.10115 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.068071 B = 0.006932 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.233953 B = 4038.174763 C = 4251.230924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.686 5.686 11 C 0.089 3.911 12 H 0.031 0.969 13 C -0.106 4.106 14 C -0.118 4.118 15 C -0.108 4.108 16 C 0.092 3.908 17 H 0.031 0.969 18 N -0.848 5.848 19 C -0.111 4.111 20 H 0.262 0.738 21 H -0.016 1.016 22 H 0.028 0.972 23 H 0.328 0.672 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.336 0.664 31 H 0.339 0.661 32 H 0.054 0.946 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.531 -13.917 -0.972 14.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.317 5.317 11 C -0.022 4.022 12 H 0.049 0.951 13 C -0.144 4.144 14 C -0.157 4.157 15 C -0.146 4.146 16 C -0.019 4.019 17 H 0.049 0.951 18 N -0.378 5.378 19 C -0.149 4.149 20 H 0.071 0.929 21 H 0.002 0.998 22 H 0.046 0.954 23 H 0.145 0.855 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.148 0.852 31 H 0.152 0.848 32 H 0.072 0.928 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.942 -13.602 0.322 13.744 hybrid contribution -0.761 0.846 -1.697 2.043 sum 1.180 -12.756 -1.374 12.884 Atomic orbital electron populations 1.69953 1.06095 1.26854 1.50951 1.24995 0.94875 0.99357 0.95373 0.86540 0.79413 0.82656 0.78651 1.20294 1.21357 1.20135 1.21179 0.93501 0.90332 1.50306 0.92027 1.19578 0.90581 0.87371 0.95629 1.60671 1.21132 1.01023 1.48859 1.21397 0.95131 0.90224 0.95437 0.95101 1.21511 1.00394 0.95337 0.97143 1.21537 0.98347 0.95470 1.00349 1.21526 1.00011 0.97732 0.95339 1.21335 0.93454 0.91802 0.95311 0.95072 1.58746 1.45655 1.05191 1.28177 1.21717 0.99587 0.93004 1.00588 0.92891 0.99825 0.95363 0.85499 0.91600 0.91733 0.91973 0.92462 0.92854 0.91171 0.85168 0.84837 0.92756 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.88 9.32 -34.44 -0.32 -15.20 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.20 5.23 5.24 -4.98 -0.03 5.21 16 10 N -0.69 -15.12 6.30 -108.00 -0.68 -15.80 16 11 C 0.09 1.63 2.50 -67.71 -0.17 1.46 16 12 H 0.03 0.61 7.80 -51.93 -0.41 0.20 16 13 C -0.11 -1.79 5.43 -26.73 -0.15 -1.94 16 14 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 15 C -0.11 -1.34 5.50 -26.73 -0.15 -1.48 16 16 C 0.09 1.18 3.25 -67.71 -0.22 0.96 16 17 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 18 N -0.85 -9.22 9.25 -4.66 -0.04 -9.26 16 19 C -0.11 -1.67 4.73 -26.73 -0.13 -1.80 16 20 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 21 H -0.02 -0.46 8.06 -51.93 -0.42 -0.87 16 22 H 0.03 0.81 7.44 -51.93 -0.39 0.43 16 23 H 0.33 6.94 8.34 -39.29 -0.33 6.61 16 24 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.06 1.22 7.45 -51.93 -0.39 0.84 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.34 3.01 9.04 -39.29 -0.36 2.66 16 31 H 0.34 3.32 8.99 -39.29 -0.35 2.97 16 32 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 265.37 15.07 4.00 4.00 Total: -1.00 -30.22 265.37 -7.98 -38.20 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.56 Total: 5.47 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -1.41 Total: -13.04 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.01 Total: -51.58 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.22 -7.98 -38.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086402485.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.718 kcal (2) G-P(sol) polarization free energy of solvation -30.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds