Wall clock time and date at job start Mon Mar 30 2020 02:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99727 * 2 1 4 4 H 1.48497 * 109.47132 * 270.00047 * 3 2 1 5 5 H 1.48496 * 109.46959 * 30.00227 * 3 2 1 6 6 H 1.48495 * 109.46947 * 150.00331 * 3 2 1 7 7 C 1.37876 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99913 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99978 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.47137 * 179.97438 * 9 7 2 11 11 C 1.46896 * 111.00087 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47271 * 35.00061 * 11 10 9 13 13 C 1.52997 * 109.46908 * 274.99791 * 11 10 9 14 14 C 1.53006 * 109.47164 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47127 * 59.99836 * 14 13 11 16 16 C 1.53000 * 109.47060 * 300.00449 * 15 14 13 17 17 H 1.09004 * 109.46724 * 180.02562 * 16 15 14 18 18 N 1.46905 * 109.47123 * 299.99706 * 16 15 14 19 19 C 1.52996 * 109.47328 * 60.00126 * 16 15 14 20 20 H 0.96996 * 120.00250 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46926 * 60.00140 * 9 7 2 22 22 H 1.08996 * 109.47391 * 300.00004 * 9 7 2 23 23 H 1.00899 * 110.99756 * 303.95484 * 10 9 7 24 24 H 1.09001 * 109.47375 * 300.00206 * 13 11 10 25 25 H 1.09000 * 109.47140 * 60.00224 * 13 11 10 26 26 H 1.08998 * 109.46505 * 299.99708 * 14 13 11 27 27 H 1.08996 * 109.46884 * 180.02562 * 14 13 11 28 28 H 1.09002 * 109.47153 * 180.02562 * 15 14 13 29 29 H 1.09001 * 109.46832 * 60.00321 * 15 14 13 30 30 H 1.00900 * 110.99847 * 300.00302 * 18 16 15 31 31 H 1.00898 * 110.99713 * 63.95338 * 18 16 15 32 32 H 1.08992 * 109.47554 * 59.99639 * 19 16 15 33 33 H 1.09004 * 109.47108 * 179.97438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0013 -2.5789 -0.0010 11 6 5.4698 -2.6180 -0.0009 12 1 5.8554 -1.7861 0.5885 13 6 5.9829 -2.5061 -1.4379 14 6 7.5124 -2.5475 -1.4380 15 6 7.9869 -3.8681 -0.8284 16 6 7.4736 -3.9801 0.6086 17 1 7.8121 -4.9208 1.0430 18 7 7.9938 -2.8592 1.4031 19 6 5.9442 -3.9388 0.6086 20 1 -0.4850 0.8400 0.0004 21 1 3.8752 -0.6803 0.8889 22 1 3.8746 -0.6799 -0.8911 23 1 3.6261 -3.0950 0.7806 24 1 5.5973 -3.3380 -2.0273 25 1 5.6445 -1.5654 -1.8723 26 1 7.8983 -1.7158 -0.8486 27 1 7.8780 -2.4673 -2.4617 28 1 9.0765 -3.8974 -0.8281 29 1 7.6009 -4.6998 -1.4179 30 1 9.0027 -2.8645 1.4185 31 1 7.6420 -1.9783 1.0591 32 1 5.5582 -4.7703 0.0191 33 1 5.5786 -4.0190 1.6323 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086402487.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:29 Heat of formation + Delta-G solvation = -18.194683 kcal Electronic energy + Delta-G solvation = -13049.931781 eV Core-core repulsion = 10916.367494 eV Total energy + Delta-G solvation = -2133.564287 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.18371 -35.06000 -32.60041 -31.94635 -29.66110 -28.21852 -26.15574 -22.41251 -21.82694 -20.65544 -18.88350 -16.89299 -16.08183 -15.01955 -14.88914 -14.50847 -14.30628 -13.97948 -13.48180 -12.53558 -12.44521 -12.23755 -11.98201 -11.76007 -11.62055 -11.07020 -10.83663 -10.72720 -10.34956 -10.24923 -9.87534 -9.64535 -9.23521 -8.67298 -8.57196 -7.43120 -6.04263 -4.01868 3.29545 3.36593 3.39433 4.43339 4.57822 4.71557 4.83318 4.92904 5.22857 5.28820 5.36238 5.50105 5.57991 5.60134 5.72405 5.83994 5.99043 6.08091 6.19619 6.29232 6.40550 6.54879 6.66787 6.83891 7.06169 7.17073 7.44147 7.64691 7.94849 8.38758 8.68032 9.04121 9.58015 11.09143 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.054650 B = 0.008264 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.228174 B = 3387.204485 C = 3501.485119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.515 4.515 8 H 0.079 0.921 9 C 0.165 3.835 10 N -0.677 5.677 11 C 0.084 3.916 12 H 0.036 0.964 13 C -0.109 4.109 14 C -0.121 4.121 15 C -0.153 4.153 16 C 0.094 3.906 17 H 0.077 0.923 18 N -0.846 5.846 19 C -0.113 4.113 20 H 0.263 0.737 21 H -0.017 1.017 22 H 0.021 0.979 23 H 0.336 0.664 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.334 0.666 31 H 0.343 0.657 32 H 0.072 0.928 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.468 -5.428 -0.572 17.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.097 0.903 9 C 0.037 3.963 10 N -0.308 5.308 11 C -0.026 4.026 12 H 0.054 0.946 13 C -0.147 4.147 14 C -0.159 4.159 15 C -0.192 4.192 16 C -0.019 4.019 17 H 0.095 0.905 18 N -0.377 5.377 19 C -0.151 4.151 20 H 0.073 0.927 21 H 0.001 0.999 22 H 0.039 0.961 23 H 0.154 0.846 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.146 0.854 31 H 0.158 0.842 32 H 0.091 0.909 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 15.846 -5.701 -0.630 16.852 hybrid contribution 0.992 1.577 -0.090 1.865 sum 16.838 -4.124 -0.720 17.350 Atomic orbital electron populations 1.69899 1.06154 1.26841 1.51123 1.24909 0.94745 0.98935 0.94774 0.86828 0.80311 0.83889 0.78537 1.20200 1.21199 1.19240 1.21088 0.89058 0.94786 1.50432 0.90315 1.20021 0.96494 0.85205 0.94569 1.60492 1.04150 1.16686 1.49438 1.21465 0.90311 0.95853 0.95007 0.94643 1.21558 0.93038 1.02669 0.97452 1.21556 0.97018 0.96941 1.00399 1.22341 0.99800 0.98739 0.98333 1.21403 0.95321 0.94605 0.90532 0.90493 1.59014 1.13160 1.06729 1.58759 1.21740 0.93732 0.98460 1.01202 0.92677 0.99900 0.96148 0.84605 0.91369 0.91947 0.92754 0.92078 0.92608 0.91369 0.85371 0.84187 0.90913 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.09 13.96 55.43 0.77 -27.31 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.52 -15.04 9.87 -34.44 -0.34 -15.38 16 8 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 9 C 0.16 4.09 4.31 -4.97 -0.02 4.07 16 10 N -0.68 -14.22 6.30 -107.99 -0.68 -14.90 16 11 C 0.08 1.42 2.23 -67.72 -0.15 1.27 16 12 H 0.04 0.63 6.23 -51.93 -0.32 0.31 16 13 C -0.11 -1.68 5.43 -26.73 -0.15 -1.83 16 14 C -0.12 -1.45 5.66 -26.73 -0.15 -1.60 16 15 C -0.15 -1.63 5.61 -26.73 -0.15 -1.78 16 16 C 0.09 1.09 3.69 -67.71 -0.25 0.84 16 17 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 18 N -0.85 -9.84 9.12 -4.66 -0.04 -9.88 16 19 C -0.11 -1.59 4.91 -26.73 -0.13 -1.72 16 20 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 21 H -0.02 -0.42 7.11 -51.93 -0.37 -0.79 16 22 H 0.02 0.51 6.86 -51.93 -0.36 0.16 16 23 H 0.34 6.92 8.33 -39.29 -0.33 6.59 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.06 1.07 7.45 -51.93 -0.39 0.68 16 26 H 0.05 0.63 6.76 -51.93 -0.35 0.28 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.33 3.16 9.04 -39.29 -0.36 2.80 16 31 H 0.34 4.26 5.44 -39.29 -0.21 4.05 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 LS Contribution 255.35 15.07 3.85 3.85 Total: -1.00 -30.58 255.35 -7.44 -38.02 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.23 Total: 7.18 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -1.44 Total: -14.22 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 0.05 Total: -52.10 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.58 -7.44 -38.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086402487.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.821 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds