Wall clock time and date at job start Mon Mar 30 2020 02:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99727 * 2 1 4 4 H 1.48497 * 109.47132 * 270.00047 * 3 2 1 5 5 H 1.48496 * 109.46959 * 30.00227 * 3 2 1 6 6 H 1.48495 * 109.46947 * 150.00331 * 3 2 1 7 7 C 1.37876 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99913 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99978 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.47137 * 179.97438 * 9 7 2 11 11 C 1.46896 * 111.00087 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47271 * 35.00061 * 11 10 9 13 13 C 1.52997 * 109.46908 * 274.99791 * 11 10 9 14 14 C 1.53006 * 109.47164 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47127 * 59.99836 * 14 13 11 16 16 C 1.53000 * 109.47060 * 300.00449 * 15 14 13 17 17 H 1.09004 * 109.46724 * 180.02562 * 16 15 14 18 18 N 1.46905 * 109.47123 * 299.99706 * 16 15 14 19 19 C 1.52996 * 109.47328 * 60.00126 * 16 15 14 20 20 H 0.96996 * 120.00250 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46926 * 60.00140 * 9 7 2 22 22 H 1.08996 * 109.47391 * 300.00004 * 9 7 2 23 23 H 1.00899 * 110.99756 * 303.95484 * 10 9 7 24 24 H 1.09001 * 109.47375 * 300.00206 * 13 11 10 25 25 H 1.09000 * 109.47140 * 60.00224 * 13 11 10 26 26 H 1.08998 * 109.46505 * 299.99708 * 14 13 11 27 27 H 1.08996 * 109.46884 * 180.02562 * 14 13 11 28 28 H 1.09002 * 109.47153 * 180.02562 * 15 14 13 29 29 H 1.09001 * 109.46832 * 60.00321 * 15 14 13 30 30 H 1.00900 * 110.99847 * 300.00302 * 18 16 15 31 31 H 1.00898 * 110.99713 * 63.95338 * 18 16 15 32 32 H 1.08992 * 109.47554 * 59.99639 * 19 16 15 33 33 H 1.09004 * 109.47108 * 179.97438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0013 -2.5789 -0.0010 11 6 5.4698 -2.6180 -0.0009 12 1 5.8554 -1.7861 0.5885 13 6 5.9829 -2.5061 -1.4379 14 6 7.5124 -2.5475 -1.4380 15 6 7.9869 -3.8681 -0.8284 16 6 7.4736 -3.9801 0.6086 17 1 7.8121 -4.9208 1.0430 18 7 7.9938 -2.8592 1.4031 19 6 5.9442 -3.9388 0.6086 20 1 -0.4850 0.8400 0.0004 21 1 3.8752 -0.6803 0.8889 22 1 3.8746 -0.6799 -0.8911 23 1 3.6261 -3.0950 0.7806 24 1 5.5973 -3.3380 -2.0273 25 1 5.6445 -1.5654 -1.8723 26 1 7.8983 -1.7158 -0.8486 27 1 7.8780 -2.4673 -2.4617 28 1 9.0765 -3.8974 -0.8281 29 1 7.6009 -4.6998 -1.4179 30 1 9.0027 -2.8645 1.4185 31 1 7.6420 -1.9783 1.0591 32 1 5.5582 -4.7703 0.0191 33 1 5.5786 -4.0190 1.6323 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086402487.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:29 Heat of formation + Delta-G solvation = -41.932509 kcal Electronic energy + Delta-G solvation = -13050.961131 eV Core-core repulsion = 10916.367494 eV Total energy + Delta-G solvation = -2134.593637 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.31025 -36.65408 -34.58719 -33.14682 -31.18875 -29.29064 -27.94788 -23.76615 -23.27490 -22.18769 -19.99728 -18.96804 -17.24636 -16.72249 -16.06053 -15.79941 -15.70924 -15.22227 -15.09530 -14.50237 -13.85365 -13.67622 -13.37628 -12.90672 -12.80417 -12.68348 -12.47738 -12.12384 -11.91853 -11.58638 -11.55508 -11.20283 -10.95426 -10.82080 -9.54779 -9.14139 -8.32567 -6.37154 1.32108 1.33893 1.45175 2.31654 3.01177 3.38893 3.68368 3.77945 3.94443 4.14786 4.28276 4.33252 4.46782 4.54565 4.67575 4.75110 4.78213 4.95352 5.03037 5.13088 5.16755 5.20839 5.31355 5.35612 5.44169 5.56309 5.97924 6.28271 6.55339 6.63985 6.65639 6.76379 7.28075 8.84280 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.054650 B = 0.008264 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.228174 B = 3387.204485 C = 3501.485119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.951 3.049 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.252 1.252 7 C -0.530 4.530 8 H 0.037 0.963 9 C 0.179 3.821 10 N -0.687 5.687 11 C 0.084 3.916 12 H 0.031 0.969 13 C -0.108 4.108 14 C -0.115 4.115 15 C -0.146 4.146 16 C 0.098 3.902 17 H 0.092 0.908 18 N -0.853 5.853 19 C -0.108 4.108 20 H 0.268 0.732 21 H -0.018 1.018 22 H 0.021 0.979 23 H 0.335 0.665 24 H 0.061 0.939 25 H 0.041 0.959 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.349 0.651 31 H 0.338 0.662 32 H 0.074 0.926 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.240 -5.010 -0.665 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.190 4.190 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.176 1.176 7 C -0.569 4.569 8 H 0.055 0.945 9 C 0.050 3.950 10 N -0.317 5.317 11 C -0.026 4.026 12 H 0.049 0.951 13 C -0.146 4.146 14 C -0.153 4.153 15 C -0.185 4.185 16 C -0.014 4.014 17 H 0.110 0.890 18 N -0.385 5.385 19 C -0.146 4.146 20 H 0.077 0.923 21 H 0.000 1.000 22 H 0.039 0.961 23 H 0.152 0.848 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.163 0.837 31 H 0.153 0.847 32 H 0.092 0.908 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 18.648 -5.309 -0.723 19.403 hybrid contribution 0.069 1.348 -0.056 1.351 sum 18.717 -3.961 -0.780 19.148 Atomic orbital electron populations 1.70049 1.08137 1.28272 1.52249 1.25891 0.95669 1.03318 0.94083 0.85660 0.79280 0.78385 0.79290 1.18965 1.20356 1.17633 1.21370 0.91483 0.93468 1.50550 0.94488 1.19729 0.93552 0.87405 0.94287 1.60436 1.07218 1.14468 1.49596 1.21585 0.87373 0.97369 0.96267 0.95117 1.21539 0.95859 1.01214 0.95980 1.21514 0.93968 0.98154 1.01631 1.22295 1.01181 0.97827 0.97236 1.21366 0.93134 0.95315 0.91561 0.89017 1.58985 1.14379 1.06351 1.58806 1.21693 0.95949 0.96693 1.00302 0.92285 1.00010 0.96057 0.84750 0.92039 0.94065 0.92166 0.90712 0.90229 0.91105 0.83739 0.84750 0.90768 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 2 C 0.01 0.48 5.47 84.65 0.46 0.94 16 3 Si 0.95 45.08 27.47 68.60 1.88 46.97 16 4 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 7 C -0.53 -31.80 9.87 25.60 0.25 -31.55 16 8 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 9 C 0.18 8.90 4.31 85.56 0.37 9.27 16 10 N -0.69 -29.10 6.30 -495.58 -3.12 -32.22 16 11 C 0.08 2.75 2.23 44.92 0.10 2.85 16 12 H 0.03 1.06 6.23 -2.39 -0.01 1.04 16 13 C -0.11 -3.19 5.43 30.60 0.17 -3.03 16 14 C -0.11 -2.42 5.66 30.60 0.17 -2.25 16 15 C -0.15 -2.59 5.61 30.59 0.17 -2.42 16 16 C 0.10 2.00 3.69 44.91 0.17 2.17 16 17 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 18 N -0.85 -17.46 9.12 -168.67 -1.54 -19.00 16 19 C -0.11 -2.88 4.91 30.59 0.15 -2.73 16 20 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 21 H -0.02 -0.88 7.11 -2.39 -0.02 -0.89 16 22 H 0.02 1.06 6.86 -2.39 -0.02 1.04 16 23 H 0.33 14.10 8.33 -89.69 -0.75 13.36 16 24 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.04 1.38 7.45 -2.39 -0.02 1.36 16 26 H 0.06 1.22 6.76 -2.39 -0.02 1.21 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.35 5.42 9.04 -89.69 -0.81 4.60 16 31 H 0.34 7.57 5.44 -89.70 -0.49 7.09 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 1.64 8.12 -2.38 -0.02 1.62 16 Total: -1.00 -66.49 255.35 -1.46 -67.95 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -0.99 Total: 23.07 kcal Atomic # 6 Polarization: -28.77 SS G_CDS: 2.01 Total: -26.76 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -4.36 Total: -111.23 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.97 kcal Total: -66.49 -1.46 -67.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086402487.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.015 kcal (2) G-P(sol) polarization free energy of solvation -66.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds