Wall clock time and date at job start Mon Mar 30 2020 02:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 N 1.46907 * 109.47119 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00045 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.46996 * 324.99364 * 11 10 9 13 13 C 1.52993 * 109.47326 * 84.99921 * 11 10 9 14 14 C 1.53006 * 109.46941 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47011 * 299.99773 * 14 13 11 16 16 C 1.52993 * 109.47083 * 60.00314 * 15 14 13 17 17 H 1.09001 * 109.46997 * 179.97438 * 16 15 14 18 18 N 1.46907 * 109.47346 * 59.99697 * 16 15 14 19 19 C 1.52998 * 109.46831 * 205.00123 * 11 10 9 20 20 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 22 22 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 23 23 H 1.00898 * 110.99239 * 303.95367 * 10 9 7 24 24 H 1.09000 * 109.47555 * 299.99299 * 13 11 10 25 25 H 1.08994 * 109.47356 * 59.99890 * 13 11 10 26 26 H 1.08998 * 109.47259 * 60.00330 * 14 13 11 27 27 H 1.09005 * 109.46970 * 179.97438 * 14 13 11 28 28 H 1.09002 * 109.46856 * 179.97438 * 15 14 13 29 29 H 1.08994 * 109.47263 * 299.99965 * 15 14 13 30 30 H 1.00901 * 110.99779 * 59.99827 * 18 16 15 31 31 H 1.00897 * 111.00130 * 183.95137 * 18 16 15 32 32 H 1.09007 * 109.47012 * 299.99821 * 19 11 10 33 33 H 1.09005 * 109.47549 * 59.99632 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5054 -4.9070 0.0012 12 1 0.5916 -4.8250 0.5897 13 6 1.1533 -5.2956 -1.4361 14 6 0.4245 -6.6409 -1.4366 15 6 1.3305 -7.7120 -0.8261 16 6 1.6826 -7.3234 0.6112 17 1 2.3277 -8.0867 1.0463 18 7 0.4510 -7.2134 1.4045 19 6 2.4109 -5.9784 0.6120 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6247 -2.5571 -0.8896 23 1 2.8411 -3.5489 -0.7792 24 1 0.5082 -4.5324 -1.8712 25 1 2.0671 -5.3776 -2.0245 26 1 -0.4893 -6.5593 -0.8481 27 1 0.1733 -6.9176 -2.4606 28 1 0.8111 -8.6703 -0.8261 29 1 2.2442 -7.7936 -1.4146 30 1 -0.0489 -8.0898 1.4195 31 1 0.6512 -6.8953 2.3408 32 1 3.3248 -6.0604 0.0236 33 1 2.6618 -5.7015 1.6360 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086402489.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:31 Heat of formation + Delta-G solvation = -26.555007 kcal Electronic energy + Delta-G solvation = -12997.160519 eV Core-core repulsion = 10863.233701 eV Total energy + Delta-G solvation = -2133.926818 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.84505 -35.05412 -32.88341 -31.89865 -29.15652 -27.98048 -25.20724 -22.17521 -22.01244 -20.87363 -19.01860 -16.84894 -15.67128 -15.59968 -14.53560 -14.15389 -14.03200 -13.63276 -13.15864 -12.67438 -12.45390 -12.12046 -11.66827 -11.51693 -11.39956 -10.78655 -10.69706 -10.51807 -10.33016 -10.10650 -10.01031 -9.87608 -8.62582 -8.46409 -8.34792 -7.24560 -6.31752 -4.00029 3.47677 3.50555 3.69071 4.54904 4.58426 4.85497 4.99961 5.08393 5.40927 5.45044 5.53084 5.63303 5.71497 5.75281 5.89467 6.00057 6.08615 6.24027 6.34817 6.48162 6.51215 6.69968 6.81404 7.08841 7.22783 7.29471 7.50613 7.90855 8.25966 8.58905 8.65708 8.94252 9.71886 11.08074 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.067296 B = 0.007237 C = 0.007148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.974904 B = 3868.042972 C = 3916.291497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 1.073 2.927 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.596 4.596 8 H 0.054 0.946 9 C 0.186 3.814 10 N -0.683 5.683 11 C 0.094 3.906 12 H 0.081 0.919 13 C -0.145 4.145 14 C -0.106 4.106 15 C -0.110 4.110 16 C 0.092 3.908 17 H 0.028 0.972 18 N -0.841 5.841 19 C -0.099 4.099 20 H 0.267 0.733 21 H 0.016 0.984 22 H -0.024 1.024 23 H 0.327 0.673 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.334 0.666 31 H 0.342 0.658 32 H 0.059 0.941 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.479 -14.728 -0.427 14.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.190 4.190 3 Si 0.902 3.098 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.634 4.634 8 H 0.073 0.927 9 C 0.059 3.941 10 N -0.311 5.311 11 C -0.017 4.017 12 H 0.100 0.900 13 C -0.184 4.184 14 C -0.144 4.144 15 C -0.148 4.148 16 C -0.020 4.020 17 H 0.046 0.954 18 N -0.371 5.371 19 C -0.137 4.137 20 H 0.077 0.923 21 H 0.034 0.966 22 H -0.007 1.007 23 H 0.144 0.856 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.146 0.854 31 H 0.154 0.846 32 H 0.078 0.922 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.161 -12.489 -0.270 12.678 hybrid contribution 0.306 -2.512 -0.338 2.553 sum 2.467 -15.002 -0.607 15.215 Atomic orbital electron populations 1.70783 1.06873 1.30458 1.47002 1.25858 0.96522 1.02723 0.93928 0.83485 0.74766 0.75110 0.76484 1.21534 1.21414 1.20845 1.22043 0.94765 0.91485 1.55125 0.92738 1.19633 0.91232 0.88885 0.94342 1.60665 1.20530 1.01189 1.48749 1.21421 0.96826 0.89584 0.93849 0.90048 1.22245 0.99977 0.97043 0.99137 1.21342 0.99298 0.94463 0.99302 1.21544 0.99742 0.98170 0.95304 1.21339 0.90212 0.96629 0.93801 0.95374 1.58675 1.23992 1.35529 1.18936 1.21527 0.97740 0.93034 1.01426 0.92259 0.96557 1.00673 0.85605 0.92291 0.92915 0.90868 0.93337 0.92790 0.92025 0.85391 0.84560 0.92202 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.78 13.65 55.43 0.76 -28.02 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.30 16 3 Si 1.07 26.00 29.90 -169.99 -5.08 20.92 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.60 -17.66 9.32 -34.44 -0.32 -17.99 16 8 H 0.05 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.19 5.06 4.55 -4.97 -0.02 5.04 16 10 N -0.68 -15.39 6.24 -108.00 -0.67 -16.07 16 11 C 0.09 1.74 2.31 -67.72 -0.16 1.58 16 12 H 0.08 1.67 7.26 -51.93 -0.38 1.30 16 13 C -0.14 -2.44 5.17 -26.73 -0.14 -2.57 16 14 C -0.11 -1.48 5.77 -26.73 -0.15 -1.63 16 15 C -0.11 -1.31 5.61 -26.74 -0.15 -1.46 16 16 C 0.09 1.14 3.57 -67.74 -0.24 0.90 16 17 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 18 N -0.84 -9.95 7.72 -4.69 -0.04 -9.98 16 19 C -0.10 -1.51 5.17 -26.76 -0.14 -1.65 16 20 H 0.27 8.42 7.22 -40.82 -0.29 8.12 16 21 H 0.02 0.48 7.92 -51.93 -0.41 0.07 16 22 H -0.02 -0.69 7.30 -51.93 -0.38 -1.07 16 23 H 0.33 7.17 8.46 -39.29 -0.33 6.84 16 24 H 0.06 1.12 7.45 -51.93 -0.39 0.73 16 25 H 0.05 0.85 8.13 -51.93 -0.42 0.42 16 26 H 0.07 1.09 7.60 -51.93 -0.39 0.69 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.33 3.22 9.04 -39.29 -0.36 2.87 16 31 H 0.34 3.86 8.99 -39.29 -0.35 3.51 16 32 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 261.81 15.07 3.95 3.95 Total: -1.00 -31.43 261.81 -7.96 -39.39 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.45 Total: 7.30 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -1.42 Total: -17.48 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.05 Total: -54.07 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -5.08 Total: 20.92 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.43 -7.96 -39.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086402489.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.831 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds