Wall clock time and date at job start Mon Mar 30 2020 02:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 N 1.46907 * 109.47119 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00045 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.46996 * 324.99364 * 11 10 9 13 13 C 1.52993 * 109.47326 * 84.99921 * 11 10 9 14 14 C 1.53006 * 109.46941 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47011 * 299.99773 * 14 13 11 16 16 C 1.52993 * 109.47083 * 60.00314 * 15 14 13 17 17 H 1.09001 * 109.46997 * 179.97438 * 16 15 14 18 18 N 1.46907 * 109.47346 * 59.99697 * 16 15 14 19 19 C 1.52998 * 109.46831 * 205.00123 * 11 10 9 20 20 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 22 22 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 23 23 H 1.00898 * 110.99239 * 303.95367 * 10 9 7 24 24 H 1.09000 * 109.47555 * 299.99299 * 13 11 10 25 25 H 1.08994 * 109.47356 * 59.99890 * 13 11 10 26 26 H 1.08998 * 109.47259 * 60.00330 * 14 13 11 27 27 H 1.09005 * 109.46970 * 179.97438 * 14 13 11 28 28 H 1.09002 * 109.46856 * 179.97438 * 15 14 13 29 29 H 1.08994 * 109.47263 * 299.99965 * 15 14 13 30 30 H 1.00901 * 110.99779 * 59.99827 * 18 16 15 31 31 H 1.00897 * 111.00130 * 183.95137 * 18 16 15 32 32 H 1.09007 * 109.47012 * 299.99821 * 19 11 10 33 33 H 1.09005 * 109.47549 * 59.99632 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5054 -4.9070 0.0012 12 1 0.5916 -4.8250 0.5897 13 6 1.1533 -5.2956 -1.4361 14 6 0.4245 -6.6409 -1.4366 15 6 1.3305 -7.7120 -0.8261 16 6 1.6826 -7.3234 0.6112 17 1 2.3277 -8.0867 1.0463 18 7 0.4510 -7.2134 1.4045 19 6 2.4109 -5.9784 0.6120 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6247 -2.5571 -0.8896 23 1 2.8411 -3.5489 -0.7792 24 1 0.5082 -4.5324 -1.8712 25 1 2.0671 -5.3776 -2.0245 26 1 -0.4893 -6.5593 -0.8481 27 1 0.1733 -6.9176 -2.4606 28 1 0.8111 -8.6703 -0.8261 29 1 2.2442 -7.7936 -1.4146 30 1 -0.0489 -8.0898 1.4195 31 1 0.6512 -6.8953 2.3408 32 1 3.3248 -6.0604 0.0236 33 1 2.6618 -5.7015 1.6360 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086402489.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:30 Heat of formation + Delta-G solvation = -50.420977 kcal Electronic energy + Delta-G solvation = -12998.195425 eV Core-core repulsion = 10863.233701 eV Total energy + Delta-G solvation = -2134.961724 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.12690 -36.80647 -34.78843 -33.25841 -30.70264 -29.18183 -27.24088 -24.26215 -23.21292 -22.39315 -20.24715 -18.98262 -17.00055 -16.71963 -15.96504 -15.60375 -15.58253 -15.53335 -14.77760 -14.19454 -14.15050 -13.48155 -13.18824 -13.03231 -12.83177 -12.74933 -12.47891 -11.92263 -11.90237 -11.64698 -11.36656 -11.22174 -10.76035 -10.61362 -9.46671 -9.12174 -8.72641 -6.43695 1.52662 1.62113 1.81958 2.55670 3.12042 3.41495 3.62665 3.84505 3.94381 4.10992 4.28043 4.40044 4.48869 4.61114 4.68449 4.69133 4.77872 4.96302 4.99522 5.05029 5.20068 5.23225 5.27590 5.41850 5.50224 5.75962 6.01963 6.32548 6.38686 6.56745 6.67604 6.74168 7.39639 8.66482 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.067296 B = 0.007237 C = 0.007148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.974904 B = 3868.042972 C = 3916.291497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.039 4.039 3 Si 1.126 2.874 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.282 1.282 7 C -0.614 4.614 8 H 0.056 0.944 9 C 0.201 3.799 10 N -0.684 5.684 11 C 0.094 3.906 12 H 0.055 0.945 13 C -0.140 4.140 14 C -0.101 4.101 15 C -0.105 4.105 16 C 0.097 3.903 17 H 0.053 0.947 18 N -0.854 5.854 19 C -0.092 4.092 20 H 0.252 0.748 21 H -0.012 1.012 22 H -0.047 1.047 23 H 0.332 0.668 24 H 0.026 0.974 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.349 0.651 31 H 0.343 0.657 32 H 0.069 0.931 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.866 -15.879 -0.665 16.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.236 4.236 3 Si 0.946 3.054 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.207 1.207 7 C -0.652 4.652 8 H 0.074 0.926 9 C 0.073 3.927 10 N -0.312 5.312 11 C -0.016 4.016 12 H 0.074 0.926 13 C -0.179 4.179 14 C -0.139 4.139 15 C -0.143 4.143 16 C -0.015 4.015 17 H 0.070 0.930 18 N -0.387 5.387 19 C -0.131 4.131 20 H 0.061 0.939 21 H 0.006 0.994 22 H -0.029 1.029 23 H 0.149 0.851 24 H 0.045 0.955 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.162 0.838 31 H 0.156 0.844 32 H 0.087 0.913 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.549 -13.700 -0.509 14.161 hybrid contribution -0.157 -2.209 -0.256 2.230 sum 3.391 -15.909 -0.765 16.285 Atomic orbital electron populations 1.70924 1.07982 1.29579 1.48807 1.27575 0.96534 1.06997 0.92503 0.82839 0.73983 0.70506 0.78098 1.19174 1.19427 1.20723 1.22422 0.95061 0.92713 1.55032 0.92560 1.19280 0.91231 0.90310 0.91891 1.60609 1.19917 1.01693 1.49011 1.21480 0.96406 0.88672 0.95049 0.92638 1.22159 1.00190 0.98050 0.97537 1.21294 0.98896 0.93317 1.00369 1.21550 0.99939 0.98207 0.94623 1.21291 0.90508 0.95085 0.94606 0.92952 1.58638 1.24149 1.36727 1.19144 1.21470 0.97649 0.93457 1.00489 0.93896 0.99394 1.02934 0.85098 0.95542 0.91800 0.92121 0.91804 0.90353 0.90883 0.83750 0.84385 0.91269 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.21 13.65 21.45 0.29 -59.92 16 2 C -0.04 -2.34 5.46 84.66 0.46 -1.88 16 3 Si 1.13 51.70 29.90 68.60 2.05 53.75 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.61 -37.01 9.32 25.60 0.24 -36.77 16 8 H 0.06 3.31 7.81 -2.91 -0.02 3.28 16 9 C 0.20 11.39 4.55 85.55 0.39 11.78 16 10 N -0.68 -31.43 6.24 -495.59 -3.09 -34.52 16 11 C 0.09 3.52 2.31 44.91 0.10 3.62 16 12 H 0.06 2.37 7.26 -2.39 -0.02 2.35 16 13 C -0.14 -4.71 5.17 30.59 0.16 -4.55 16 14 C -0.10 -2.64 5.77 30.60 0.18 -2.47 16 15 C -0.11 -2.17 5.61 30.59 0.17 -1.99 16 16 C 0.10 2.14 3.57 44.90 0.16 2.30 16 17 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 18 N -0.85 -18.80 7.72 -168.74 -1.30 -20.11 16 19 C -0.09 -2.69 5.17 30.58 0.16 -2.53 16 20 H 0.25 16.57 7.22 -92.70 -0.67 15.90 16 21 H -0.01 -0.74 7.92 -2.39 -0.02 -0.76 16 22 H -0.05 -2.81 7.30 -2.39 -0.02 -2.83 16 23 H 0.33 14.65 8.46 -89.70 -0.76 13.89 16 24 H 0.03 1.03 7.45 -2.39 -0.02 1.01 16 25 H 0.06 1.99 8.13 -2.39 -0.02 1.97 16 26 H 0.06 1.75 7.60 -2.39 -0.02 1.74 16 27 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.35 5.90 9.04 -89.69 -0.81 5.09 16 31 H 0.34 7.39 8.99 -89.70 -0.81 6.58 16 32 H 0.07 1.89 8.14 -2.38 -0.02 1.88 16 33 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -68.75 261.81 -1.21 -69.96 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -1.17 Total: 23.34 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: 2.02 Total: -32.50 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -4.10 Total: -114.54 kcal Atomic # 14 Polarization: 51.70 SS G_CDS: 2.05 Total: 53.75 kcal Total: -68.75 -1.21 -69.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086402489.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.535 kcal (2) G-P(sol) polarization free energy of solvation -68.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds