Wall clock time and date at job start Mon Mar 30 2020 02:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00088 * 2 1 4 4 H 1.48497 * 109.47128 * 269.99999 * 3 2 1 5 5 H 1.48494 * 109.47126 * 29.99742 * 3 2 1 6 6 H 1.48497 * 109.47177 * 150.00043 * 3 2 1 7 7 C 1.37882 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00315 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99806 * 359.97438 * 7 2 1 10 10 N 1.46892 * 109.47411 * 180.02562 * 9 7 2 11 11 C 1.46902 * 111.00363 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47263 * 325.00495 * 11 10 9 13 13 C 1.53006 * 109.46626 * 85.00189 * 11 10 9 14 14 C 1.52999 * 109.46626 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47592 * 300.00035 * 14 13 11 16 16 C 1.52996 * 109.47165 * 60.00300 * 15 14 13 17 17 H 1.08996 * 109.47134 * 59.99508 * 16 15 14 18 18 N 1.46897 * 109.47593 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47489 * 205.00162 * 11 10 9 20 20 H 0.97000 * 119.99958 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47305 * 59.99968 * 9 7 2 22 22 H 1.09001 * 109.47142 * 300.00403 * 9 7 2 23 23 H 1.00903 * 111.00135 * 303.95790 * 10 9 7 24 24 H 1.08993 * 109.46955 * 300.00347 * 13 11 10 25 25 H 1.09000 * 109.47050 * 60.00176 * 13 11 10 26 26 H 1.09000 * 109.47160 * 60.00369 * 14 13 11 27 27 H 1.09002 * 109.46719 * 180.02562 * 14 13 11 28 28 H 1.09000 * 109.47140 * 300.00346 * 15 14 13 29 29 H 1.09001 * 109.47375 * 180.02562 * 15 14 13 30 30 H 1.00906 * 110.99361 * 299.99730 * 18 16 15 31 31 H 1.00899 * 111.00162 * 63.94828 * 18 16 15 32 32 H 1.09000 * 109.47140 * 300.00408 * 19 11 10 33 33 H 1.09001 * 109.47230 * 59.99552 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9071 0.0001 12 1 0.5923 -4.8250 0.5897 13 6 1.1513 -5.2958 -1.4368 14 6 0.4225 -6.6411 -1.4362 15 6 1.3293 -7.7122 -0.8268 16 6 1.6833 -7.3234 0.6100 17 1 0.7703 -7.2417 1.1997 18 7 2.5544 -8.3515 1.1950 19 6 2.4116 -5.9784 0.6097 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8896 23 1 2.8406 -3.5486 -0.7819 24 1 0.5057 -4.5325 -1.8711 25 1 2.0644 -5.3779 -2.0265 26 1 -0.4905 -6.5594 -0.8465 27 1 0.1707 -6.9182 -2.4599 28 1 2.2423 -7.7938 -1.4165 29 1 0.8102 -8.6706 -0.8268 30 1 2.0956 -9.2501 1.2067 31 1 3.4348 -8.4013 0.7047 32 1 3.3246 -6.0605 0.0201 33 1 2.6639 -5.7014 1.6333 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086402491.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:32 Heat of formation + Delta-G solvation = -26.901587 kcal Electronic energy + Delta-G solvation = -12832.024603 eV Core-core repulsion = 10698.082756 eV Total energy + Delta-G solvation = -2133.941847 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.81403 -35.09105 -32.97555 -32.01174 -29.33340 -27.59090 -25.71590 -22.08789 -21.84081 -20.69987 -19.75032 -16.49343 -15.80679 -15.26100 -14.68310 -14.30493 -13.91067 -13.62565 -13.43247 -12.75321 -12.57496 -12.12434 -11.82484 -11.40135 -10.97362 -10.89477 -10.82824 -10.68716 -10.41229 -10.33461 -10.14378 -9.72056 -9.13052 -8.64157 -8.46042 -7.20982 -6.00994 -4.02722 3.33269 3.39272 3.44282 4.43290 4.53734 4.82585 4.90215 5.16859 5.34718 5.38469 5.45889 5.55679 5.67330 5.73583 5.81560 5.91506 6.14091 6.23000 6.24421 6.36585 6.43625 6.71273 6.77079 7.16678 7.30958 7.43229 7.48288 7.82145 8.16584 8.44684 8.66499 9.07030 9.62131 11.10085 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.068841 B = 0.006919 C = 0.006588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.634328 B = 4045.607413 C = 4249.337724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.685 5.685 11 C 0.089 3.911 12 H 0.070 0.930 13 C -0.149 4.149 14 C -0.111 4.111 15 C -0.149 4.149 16 C 0.089 3.911 17 H 0.078 0.922 18 N -0.845 5.845 19 C -0.096 4.096 20 H 0.261 0.739 21 H -0.013 1.013 22 H 0.027 0.973 23 H 0.328 0.672 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.335 0.665 31 H 0.337 0.663 32 H 0.054 0.946 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.140 -14.201 -2.285 14.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.314 5.314 11 C -0.023 4.023 12 H 0.088 0.912 13 C -0.188 4.188 14 C -0.150 4.150 15 C -0.189 4.189 16 C -0.022 4.022 17 H 0.097 0.903 18 N -0.372 5.372 19 C -0.134 4.134 20 H 0.070 0.930 21 H 0.004 0.996 22 H 0.045 0.955 23 H 0.144 0.856 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.073 0.927 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.047 -13.597 -0.891 13.779 hybrid contribution -0.098 0.439 -1.990 2.041 sum 1.949 -13.158 -2.881 13.610 Atomic orbital electron populations 1.69963 1.06086 1.26739 1.51035 1.24992 0.94871 0.99357 0.95384 0.86487 0.79830 0.83046 0.77988 1.20766 1.21249 1.19759 1.21214 0.93530 0.90343 1.50174 0.92008 1.19570 0.90630 0.87352 0.95673 1.60707 1.20858 1.01057 1.48740 1.21480 0.96518 0.90631 0.93626 0.91184 1.22320 1.00368 0.96727 0.99392 1.21407 0.98477 0.95014 1.00127 1.22388 0.99916 0.98379 0.98212 1.21499 0.96269 0.92343 0.92135 0.90345 1.58927 1.07632 1.09817 1.60850 1.21488 0.97882 0.91980 1.02078 0.92950 0.99558 0.95526 0.85555 0.91697 0.92418 0.91986 0.92617 0.92349 0.92738 0.85259 0.85052 0.92698 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.81 9.32 -34.44 -0.32 -15.13 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.19 5.17 5.24 -4.98 -0.03 5.14 16 10 N -0.69 -14.92 6.24 -108.00 -0.67 -15.60 16 11 C 0.09 1.59 2.47 -67.71 -0.17 1.42 16 12 H 0.07 1.35 7.80 -51.93 -0.40 0.94 16 13 C -0.15 -2.35 5.17 -26.73 -0.14 -2.48 16 14 C -0.11 -1.43 5.92 -26.73 -0.16 -1.59 16 15 C -0.15 -1.69 5.49 -26.73 -0.15 -1.84 16 16 C 0.09 1.12 3.25 -67.74 -0.22 0.90 16 17 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 18 N -0.84 -9.27 9.25 -4.69 -0.04 -9.31 16 19 C -0.10 -1.46 5.07 -26.76 -0.14 -1.60 16 20 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 21 H -0.01 -0.37 7.44 -51.93 -0.39 -0.76 16 22 H 0.03 0.77 8.05 -51.93 -0.42 0.35 16 23 H 0.33 6.86 8.47 -39.29 -0.33 6.53 16 24 H 0.06 1.15 7.45 -51.93 -0.39 0.76 16 25 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.34 3.01 9.04 -39.29 -0.36 2.66 16 31 H 0.34 3.35 8.98 -39.29 -0.35 3.00 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 265.49 15.07 4.00 4.00 Total: -1.00 -29.96 265.49 -7.97 -37.93 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.56 Total: 6.16 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -1.41 Total: -13.67 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.02 Total: -51.35 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.96 -7.97 -37.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086402491.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.032 kcal (2) G-P(sol) polarization free energy of solvation -29.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds