Wall clock time and date at job start Mon Mar 30 2020 02:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00088 * 2 1 4 4 H 1.48497 * 109.47128 * 269.99999 * 3 2 1 5 5 H 1.48494 * 109.47126 * 29.99742 * 3 2 1 6 6 H 1.48497 * 109.47177 * 150.00043 * 3 2 1 7 7 C 1.37882 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00315 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99806 * 359.97438 * 7 2 1 10 10 N 1.46892 * 109.47411 * 180.02562 * 9 7 2 11 11 C 1.46902 * 111.00363 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47263 * 325.00495 * 11 10 9 13 13 C 1.53006 * 109.46626 * 85.00189 * 11 10 9 14 14 C 1.52999 * 109.46626 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47592 * 300.00035 * 14 13 11 16 16 C 1.52996 * 109.47165 * 60.00300 * 15 14 13 17 17 H 1.08996 * 109.47134 * 59.99508 * 16 15 14 18 18 N 1.46897 * 109.47593 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47489 * 205.00162 * 11 10 9 20 20 H 0.97000 * 119.99958 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47305 * 59.99968 * 9 7 2 22 22 H 1.09001 * 109.47142 * 300.00403 * 9 7 2 23 23 H 1.00903 * 111.00135 * 303.95790 * 10 9 7 24 24 H 1.08993 * 109.46955 * 300.00347 * 13 11 10 25 25 H 1.09000 * 109.47050 * 60.00176 * 13 11 10 26 26 H 1.09000 * 109.47160 * 60.00369 * 14 13 11 27 27 H 1.09002 * 109.46719 * 180.02562 * 14 13 11 28 28 H 1.09000 * 109.47140 * 300.00346 * 15 14 13 29 29 H 1.09001 * 109.47375 * 180.02562 * 15 14 13 30 30 H 1.00906 * 110.99361 * 299.99730 * 18 16 15 31 31 H 1.00899 * 111.00162 * 63.94828 * 18 16 15 32 32 H 1.09000 * 109.47140 * 300.00408 * 19 11 10 33 33 H 1.09001 * 109.47230 * 59.99552 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9071 0.0001 12 1 0.5923 -4.8250 0.5897 13 6 1.1513 -5.2958 -1.4368 14 6 0.4225 -6.6411 -1.4362 15 6 1.3293 -7.7122 -0.8268 16 6 1.6833 -7.3234 0.6100 17 1 0.7703 -7.2417 1.1997 18 7 2.5544 -8.3515 1.1950 19 6 2.4116 -5.9784 0.6097 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8896 23 1 2.8406 -3.5486 -0.7819 24 1 0.5057 -4.5325 -1.8711 25 1 2.0644 -5.3779 -2.0265 26 1 -0.4905 -6.5594 -0.8465 27 1 0.1707 -6.9182 -2.4599 28 1 2.2423 -7.7938 -1.4165 29 1 0.8102 -8.6706 -0.8268 30 1 2.0956 -9.2501 1.2067 31 1 3.4348 -8.4013 0.7047 32 1 3.3246 -6.0605 0.0201 33 1 2.6639 -5.7014 1.6333 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086402491.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:32 Heat of formation + Delta-G solvation = -49.596829 kcal Electronic energy + Delta-G solvation = -12833.008743 eV Core-core repulsion = 10698.082756 eV Total energy + Delta-G solvation = -2134.925987 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.06785 -36.68427 -34.75917 -33.49295 -30.88949 -28.80961 -27.59974 -24.01037 -23.00911 -22.19178 -20.94742 -18.59084 -16.93969 -16.74458 -16.47219 -15.62709 -15.43141 -14.94996 -14.62549 -14.48081 -14.02373 -13.58501 -13.46483 -13.16029 -12.70261 -12.58085 -12.15854 -12.11645 -12.02235 -11.72830 -11.48554 -11.43962 -11.09521 -10.66817 -9.53050 -9.03937 -8.23382 -6.35041 1.40334 1.42518 1.54457 2.39503 3.09579 3.37497 3.71378 3.75465 4.03179 4.18944 4.24979 4.29426 4.50516 4.57171 4.61059 4.70570 4.96549 5.03060 5.09256 5.10367 5.20751 5.22339 5.30438 5.45437 5.49935 5.62702 6.02366 6.29331 6.47199 6.69199 6.73991 6.90169 7.36174 8.88201 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.068841 B = 0.006919 C = 0.006588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.634328 B = 4045.607413 C = 4249.337724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.538 4.538 8 H 0.064 0.936 9 C 0.212 3.788 10 N -0.687 5.687 11 C 0.087 3.913 12 H 0.047 0.953 13 C -0.142 4.142 14 C -0.108 4.108 15 C -0.140 4.140 16 C 0.097 3.903 17 H 0.069 0.931 18 N -0.849 5.849 19 C -0.085 4.085 20 H 0.265 0.735 21 H -0.037 1.037 22 H -0.006 1.006 23 H 0.334 0.666 24 H 0.036 0.964 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.350 0.650 31 H 0.346 0.654 32 H 0.064 0.936 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.291 -15.168 -2.837 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.576 4.576 8 H 0.082 0.918 9 C 0.084 3.916 10 N -0.316 5.316 11 C -0.024 4.024 12 H 0.066 0.934 13 C -0.181 4.181 14 C -0.147 4.147 15 C -0.179 4.179 16 C -0.015 4.015 17 H 0.087 0.913 18 N -0.378 5.378 19 C -0.124 4.124 20 H 0.074 0.926 21 H -0.019 1.019 22 H 0.012 0.988 23 H 0.151 0.849 24 H 0.055 0.945 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.164 0.836 31 H 0.159 0.841 32 H 0.082 0.918 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.209 -14.604 -1.448 15.023 hybrid contribution -0.477 0.692 -1.797 1.984 sum 2.732 -13.913 -3.245 14.545 Atomic orbital electron populations 1.70095 1.07863 1.28031 1.51516 1.25985 0.95810 1.03486 0.94506 0.85298 0.78456 0.77794 0.78541 1.19530 1.20650 1.18905 1.21577 0.93824 0.91548 1.50672 0.91793 1.19174 0.90616 0.88901 0.92924 1.60605 1.20288 1.01514 1.49171 1.21562 0.96046 0.89607 0.95211 0.93431 1.22196 1.00674 0.97873 0.97359 1.21392 0.98277 0.93597 1.01429 1.22314 1.00146 0.98625 0.96808 1.21302 0.95682 0.91270 0.93287 0.91309 1.58825 1.07892 1.10244 1.60881 1.21343 0.97867 0.92642 1.00527 0.92592 1.01946 0.98817 0.84856 0.94502 0.91324 0.92445 0.90832 0.91372 0.90314 0.83579 0.84098 0.91761 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.98 45.05 29.54 68.60 2.03 47.07 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.54 -31.60 9.32 25.60 0.24 -31.36 16 8 H 0.06 3.64 7.81 -2.92 -0.02 3.62 16 9 C 0.21 11.76 5.24 85.56 0.45 12.21 16 10 N -0.69 -30.74 6.24 -495.59 -3.09 -33.83 16 11 C 0.09 3.15 2.47 44.92 0.11 3.26 16 12 H 0.05 1.93 7.80 -2.39 -0.02 1.91 16 13 C -0.14 -4.45 5.17 30.60 0.16 -4.29 16 14 C -0.11 -2.59 5.92 30.59 0.18 -2.41 16 15 C -0.14 -2.73 5.49 30.59 0.17 -2.56 16 16 C 0.10 2.26 3.25 44.90 0.15 2.40 16 17 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 18 N -0.85 -16.44 9.25 -168.76 -1.56 -18.00 16 19 C -0.09 -2.55 5.07 30.58 0.15 -2.39 16 20 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 21 H -0.04 -2.19 7.44 -2.39 -0.02 -2.21 16 22 H -0.01 -0.39 8.05 -2.39 -0.02 -0.40 16 23 H 0.33 14.15 8.47 -89.69 -0.76 13.39 16 24 H 0.04 1.35 7.45 -2.39 -0.02 1.33 16 25 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.35 5.21 9.04 -89.69 -0.81 4.40 16 31 H 0.35 5.85 8.98 -89.69 -0.81 5.05 16 32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -65.25 265.49 -1.55 -66.80 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -1.28 Total: 20.00 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: 2.07 Total: -24.66 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -4.37 Total: -109.21 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -65.25 -1.55 -66.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086402491.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.202 kcal (2) G-P(sol) polarization free energy of solvation -65.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds