Wall clock time and date at job start Mon Mar 30 2020 02:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00180 * 2 1 4 4 H 1.48496 * 109.47537 * 269.99902 * 3 2 1 5 5 H 1.48504 * 109.47036 * 30.00311 * 3 2 1 6 6 H 1.48506 * 109.47086 * 150.00168 * 3 2 1 7 7 C 1.37877 * 119.99581 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00042 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00330 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.46985 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99728 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47089 * 180.02562 * 11 10 9 13 13 C 1.53118 * 109.52328 * 174.99861 * 12 11 10 14 14 C 1.53034 * 109.28068 * 177.55504 * 13 12 11 15 15 N 1.46848 * 109.52504 * 300.82023 * 14 13 12 16 16 C 1.46847 * 111.19556 * 61.74015 * 15 14 13 17 17 C 1.53044 * 109.52516 * 298.25761 * 16 15 14 18 18 H 0.97003 * 119.99734 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.46642 * 60.00472 * 9 7 2 20 20 H 1.08995 * 109.46620 * 300.00487 * 9 7 2 21 21 H 1.00901 * 110.99495 * 303.95251 * 10 9 7 22 22 H 1.08997 * 109.47345 * 59.99125 * 11 10 9 23 23 H 1.09006 * 109.47051 * 299.99647 * 11 10 9 24 24 H 1.08992 * 109.57558 * 54.83767 * 12 11 10 25 25 H 1.09001 * 109.50624 * 57.61525 * 13 12 11 26 26 H 1.08998 * 109.50047 * 297.49982 * 13 12 11 27 27 H 1.09000 * 109.46341 * 180.80474 * 14 13 12 28 28 H 1.08999 * 109.46274 * 60.83372 * 14 13 12 29 29 H 1.00901 * 111.00066 * 185.83397 * 15 14 13 30 30 H 1.08999 * 109.46628 * 58.27319 * 16 15 14 31 31 H 1.09003 * 109.46158 * 178.24166 * 16 15 14 32 32 H 1.08996 * 109.50067 * 299.23984 * 17 16 15 33 33 H 1.08993 * 109.50192 * 179.12052 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5052 -4.9071 -0.0011 12 6 2.5300 -6.0431 -0.0005 13 6 1.8053 -7.3860 0.1247 14 6 2.8300 -8.5209 0.0634 15 7 3.5599 -8.4551 -1.2091 16 6 4.3020 -7.1938 -1.3309 17 6 3.3211 -6.0192 -1.3113 18 1 -0.4850 0.8401 0.0004 19 1 0.6240 -2.5567 -0.8904 20 1 0.6246 -2.5570 0.8896 21 1 2.8404 -3.5487 -0.7819 22 1 0.8805 -4.9812 -0.8913 23 1 0.8800 -4.9818 0.8887 24 1 3.2131 -5.9181 0.8396 25 1 1.0940 -7.4935 -0.6942 26 1 1.2746 -7.4258 1.0759 27 1 2.3158 -9.4791 0.1379 28 1 3.5328 -8.4208 0.8906 29 1 4.1748 -9.2480 -1.3148 30 1 4.9978 -7.0998 -0.4971 31 1 4.8569 -7.1880 -2.2691 32 1 2.6337 -6.1051 -2.1528 33 1 3.8735 -5.0826 -1.3860 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086700369.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:15 Heat of formation + Delta-G solvation = -19.508749 kcal Electronic energy + Delta-G solvation = -12648.530284 eV Core-core repulsion = 10514.909015 eV Total energy + Delta-G solvation = -2133.621269 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.73000 -35.36019 -32.91327 -31.37495 -30.67711 -27.15332 -24.70992 -22.94047 -21.69644 -20.90217 -19.42722 -16.73350 -16.27838 -14.92142 -14.59842 -14.57547 -14.06988 -13.67947 -13.51405 -12.90008 -12.50953 -12.15665 -12.03542 -11.32234 -11.27455 -11.10469 -10.80243 -10.74578 -10.33191 -10.23697 -10.01959 -9.74779 -9.11451 -8.50779 -8.45811 -7.23589 -6.00787 -4.02738 3.33267 3.39044 3.43861 4.18674 4.44898 4.90922 4.94671 5.01212 5.29107 5.34924 5.39622 5.51457 5.59954 5.73785 5.83061 5.88065 5.93633 6.12297 6.25628 6.30528 6.36335 6.53964 6.72220 6.99281 7.29127 7.32675 7.46532 7.81568 8.16559 8.44688 8.66365 9.06797 9.62106 11.10440 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.075781 B = 0.006224 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.397690 B = 4497.307489 C = 4742.525434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.691 5.691 11 C 0.065 3.935 12 C -0.086 4.086 13 C -0.112 4.112 14 C 0.059 3.941 15 N -0.692 5.692 16 C 0.059 3.941 17 C -0.114 4.114 18 H 0.261 0.739 19 H -0.014 1.014 20 H 0.027 0.973 21 H 0.327 0.673 22 H 0.018 0.982 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.028 0.972 29 H 0.337 0.663 30 H 0.029 0.971 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.011 -14.758 -1.374 15.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.066 3.934 10 N -0.322 5.322 11 C -0.065 4.065 12 C -0.105 4.105 13 C -0.151 4.151 14 C -0.070 4.070 15 N -0.323 5.323 16 C -0.070 4.070 17 C -0.152 4.152 18 H 0.071 0.929 19 H 0.003 0.997 20 H 0.045 0.955 21 H 0.144 0.856 22 H 0.036 0.964 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.154 0.846 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.385 -14.375 -1.027 15.385 hybrid contribution 0.726 0.761 -0.268 1.085 sum 6.111 -13.614 -1.295 14.979 Atomic orbital electron populations 1.69970 1.06099 1.26747 1.50996 1.24999 0.94879 0.99374 0.95377 0.86480 0.79787 0.83013 0.78017 1.20721 1.21236 1.19782 1.21204 0.93492 0.90314 1.50230 0.92014 1.19550 0.90666 0.87474 0.95710 1.60713 1.21241 1.01398 1.48842 1.21893 0.94946 0.90085 0.99602 1.21217 0.97512 0.93898 0.97857 1.21616 0.97719 0.93811 1.01927 1.21911 0.96248 0.99124 0.89708 1.60292 1.32369 1.04383 1.35243 1.21931 0.94931 0.89918 1.00232 1.21654 0.98214 0.97185 0.98147 0.92934 0.99672 0.95508 0.85604 0.96423 0.91973 0.90948 0.91347 0.91637 0.91181 0.95373 0.84567 0.95286 0.91114 0.91560 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.93 9.32 -34.44 -0.32 -15.25 16 8 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 9 C 0.19 5.23 5.44 -4.97 -0.03 5.21 16 10 N -0.69 -15.37 6.49 -115.06 -0.75 -16.11 16 11 C 0.06 1.20 5.15 -3.83 -0.02 1.18 16 12 C -0.09 -1.28 2.46 -90.50 -0.22 -1.51 16 13 C -0.11 -1.43 5.38 -26.65 -0.14 -1.58 16 14 C 0.06 0.65 6.55 -3.83 -0.03 0.63 16 15 N -0.69 -7.67 6.85 -113.81 -0.78 -8.45 16 16 C 0.06 0.69 6.55 -3.83 -0.03 0.67 16 17 C -0.11 -1.59 5.10 -26.65 -0.14 -1.73 16 18 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 19 H -0.01 -0.42 8.14 -51.93 -0.42 -0.84 16 20 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.33 6.91 7.05 -39.29 -0.28 6.64 16 22 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 23 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.34 2.99 8.90 -39.29 -0.35 2.64 16 30 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.04 6.81 -51.93 -0.35 0.69 16 LS Contribution 265.46 15.07 4.00 4.00 Total: -1.00 -30.59 265.46 -8.43 -39.01 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.60 Total: 2.10 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -1.02 Total: -10.88 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -0.79 Total: -51.20 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.59 -8.43 -39.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086700369.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.504 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds