Wall clock time and date at job start Mon Mar 30 2020 02:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00180 * 2 1 4 4 H 1.48496 * 109.47537 * 269.99902 * 3 2 1 5 5 H 1.48504 * 109.47036 * 30.00311 * 3 2 1 6 6 H 1.48506 * 109.47086 * 150.00168 * 3 2 1 7 7 C 1.37877 * 119.99581 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00042 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00330 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.46985 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99728 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47089 * 180.02562 * 11 10 9 13 13 C 1.53118 * 109.52328 * 174.99861 * 12 11 10 14 14 C 1.53034 * 109.28068 * 177.55504 * 13 12 11 15 15 N 1.46848 * 109.52504 * 300.82023 * 14 13 12 16 16 C 1.46847 * 111.19556 * 61.74015 * 15 14 13 17 17 C 1.53044 * 109.52516 * 298.25761 * 16 15 14 18 18 H 0.97003 * 119.99734 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.46642 * 60.00472 * 9 7 2 20 20 H 1.08995 * 109.46620 * 300.00487 * 9 7 2 21 21 H 1.00901 * 110.99495 * 303.95251 * 10 9 7 22 22 H 1.08997 * 109.47345 * 59.99125 * 11 10 9 23 23 H 1.09006 * 109.47051 * 299.99647 * 11 10 9 24 24 H 1.08992 * 109.57558 * 54.83767 * 12 11 10 25 25 H 1.09001 * 109.50624 * 57.61525 * 13 12 11 26 26 H 1.08998 * 109.50047 * 297.49982 * 13 12 11 27 27 H 1.09000 * 109.46341 * 180.80474 * 14 13 12 28 28 H 1.08999 * 109.46274 * 60.83372 * 14 13 12 29 29 H 1.00901 * 111.00066 * 185.83397 * 15 14 13 30 30 H 1.08999 * 109.46628 * 58.27319 * 16 15 14 31 31 H 1.09003 * 109.46158 * 178.24166 * 16 15 14 32 32 H 1.08996 * 109.50067 * 299.23984 * 17 16 15 33 33 H 1.08993 * 109.50192 * 179.12052 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5052 -4.9071 -0.0011 12 6 2.5300 -6.0431 -0.0005 13 6 1.8053 -7.3860 0.1247 14 6 2.8300 -8.5209 0.0634 15 7 3.5599 -8.4551 -1.2091 16 6 4.3020 -7.1938 -1.3309 17 6 3.3211 -6.0192 -1.3113 18 1 -0.4850 0.8401 0.0004 19 1 0.6240 -2.5567 -0.8904 20 1 0.6246 -2.5570 0.8896 21 1 2.8404 -3.5487 -0.7819 22 1 0.8805 -4.9812 -0.8913 23 1 0.8800 -4.9818 0.8887 24 1 3.2131 -5.9181 0.8396 25 1 1.0940 -7.4935 -0.6942 26 1 1.2746 -7.4258 1.0759 27 1 2.3158 -9.4791 0.1379 28 1 3.5328 -8.4208 0.8906 29 1 4.1748 -9.2480 -1.3148 30 1 4.9978 -7.0998 -0.4971 31 1 4.8569 -7.1880 -2.2691 32 1 2.6337 -6.1051 -2.1528 33 1 3.8735 -5.0826 -1.3860 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086700369.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:14 Heat of formation + Delta-G solvation = -42.466936 kcal Electronic energy + Delta-G solvation = -12649.525826 eV Core-core repulsion = 10514.909015 eV Total energy + Delta-G solvation = -2134.616811 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.84347 -37.02336 -34.83963 -32.94392 -31.68891 -29.03643 -26.33863 -24.13394 -23.39563 -22.38057 -20.55372 -18.61012 -17.55779 -16.79729 -16.39819 -15.52105 -15.30654 -15.13270 -14.89778 -14.47170 -13.96948 -13.81680 -13.28356 -13.05626 -12.81772 -12.64593 -12.60547 -12.12389 -12.06961 -11.67509 -11.46995 -11.13711 -11.01918 -10.67915 -9.36693 -9.15057 -8.24090 -6.36168 1.40708 1.42967 1.54874 2.39438 3.09019 3.34216 3.52350 3.85410 3.89403 4.10250 4.32597 4.43143 4.49781 4.60904 4.67825 4.75008 4.90267 4.94819 4.97047 5.07018 5.09723 5.21168 5.25854 5.29909 5.50486 5.60847 5.99969 6.09184 6.42502 6.57283 6.70551 6.87022 7.35151 8.87865 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.075781 B = 0.006224 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.397690 B = 4497.307489 C = 4742.525434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.977 3.023 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.206 3.794 10 N -0.688 5.688 11 C 0.065 3.935 12 C -0.077 4.077 13 C -0.110 4.110 14 C 0.062 3.938 15 N -0.698 5.698 16 C 0.064 3.936 17 C -0.114 4.114 18 H 0.266 0.734 19 H -0.042 1.042 20 H -0.002 1.002 21 H 0.334 0.666 22 H 0.011 0.989 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.033 0.967 29 H 0.353 0.647 30 H 0.032 0.968 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.496 -15.292 -1.469 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.801 3.199 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.078 3.922 10 N -0.319 5.319 11 C -0.064 4.064 12 C -0.096 4.096 13 C -0.149 4.149 14 C -0.067 4.067 15 N -0.331 5.331 16 C -0.065 4.065 17 C -0.152 4.152 18 H 0.075 0.925 19 H -0.024 1.024 20 H 0.016 0.984 21 H 0.152 0.848 22 H 0.030 0.970 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.051 0.949 29 H 0.172 0.828 30 H 0.051 0.949 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.887 -14.947 -1.129 16.496 hybrid contribution 0.216 0.875 -0.241 0.933 sum 7.103 -14.072 -1.369 15.823 Atomic orbital electron populations 1.70102 1.07925 1.28103 1.51419 1.26009 0.95824 1.03571 0.94418 0.85270 0.78444 0.77631 0.78564 1.19535 1.20602 1.18798 1.21552 0.93832 0.91393 1.50843 0.91669 1.19218 0.90732 0.89178 0.93025 1.60606 1.20464 1.01622 1.49224 1.21983 0.95863 0.89666 0.98903 1.21124 0.96559 0.93552 0.98341 1.21599 0.98061 0.93133 1.02064 1.21896 0.95897 0.99029 0.89859 1.60248 1.32841 1.04688 1.35319 1.21853 0.94238 0.89225 1.01195 1.21624 0.98393 0.98159 0.97000 0.92541 1.02399 0.98376 0.84766 0.97029 0.92708 0.91432 0.92032 0.90963 0.89200 0.94908 0.82754 0.94933 0.89692 0.92505 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.77 13.29 21.45 0.28 -57.49 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 3 Si 0.98 44.89 29.54 68.60 2.03 46.92 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.54 -31.65 9.32 25.60 0.24 -31.41 16 8 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 9 C 0.21 11.60 5.44 85.56 0.47 12.06 16 10 N -0.69 -31.18 6.49 -517.93 -3.36 -34.54 16 11 C 0.07 2.47 5.15 86.30 0.44 2.92 16 12 C -0.08 -2.25 2.46 -10.72 -0.03 -2.27 16 13 C -0.11 -2.66 5.38 30.65 0.16 -2.49 16 14 C 0.06 1.21 6.55 86.32 0.57 1.77 16 15 N -0.70 -13.64 6.85 -513.99 -3.52 -17.16 16 16 C 0.06 1.36 6.55 86.33 0.57 1.93 16 17 C -0.11 -3.07 5.10 30.65 0.16 -2.91 16 18 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 19 H -0.04 -2.51 8.14 -2.39 -0.02 -2.53 16 20 H 0.00 -0.12 8.14 -2.39 -0.02 -0.13 16 21 H 0.33 14.31 7.05 -89.69 -0.63 13.67 16 22 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 23 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 24 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.35 5.16 8.90 -89.69 -0.80 4.36 16 30 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.06 1.79 6.81 -2.39 -0.02 1.78 16 Total: -1.00 -65.34 265.46 -1.89 -67.23 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -0.35 Total: 15.00 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 3.04 Total: -19.95 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -6.59 Total: -109.20 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -65.34 -1.89 -67.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086700369.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.760 kcal (2) G-P(sol) polarization free energy of solvation -65.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds