Wall clock time and date at job start Mon Mar 30 2020 02:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00116 * 2 1 4 4 H 1.48499 * 109.47046 * 270.00072 * 3 2 1 5 5 H 1.48501 * 109.46849 * 29.99486 * 3 2 1 6 6 H 1.48497 * 109.47189 * 149.99693 * 3 2 1 7 7 C 1.37878 * 120.00537 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00591 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99449 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47137 * 179.97438 * 9 7 2 11 11 C 1.46896 * 111.00087 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47469 * 154.99788 * 11 10 9 13 13 C 1.52996 * 109.47486 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47165 * 300.00170 * 13 12 11 15 15 N 1.46906 * 109.46907 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.46978 * 60.00120 * 14 13 12 17 17 C 1.52996 * 109.46891 * 299.99589 * 16 14 13 18 18 H 0.96996 * 120.00050 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47422 * 59.99866 * 9 7 2 20 20 H 1.08996 * 109.47391 * 299.99724 * 9 7 2 21 21 H 1.00909 * 110.99885 * 303.95310 * 10 9 7 22 22 H 1.09001 * 109.47271 * 35.00061 * 11 10 9 23 23 H 1.09001 * 109.47109 * 59.99618 * 12 11 10 24 24 H 1.09004 * 109.47086 * 300.00091 * 12 11 10 25 25 H 1.09000 * 109.47054 * 180.02562 * 13 12 11 26 26 H 1.09001 * 109.46997 * 60.00430 * 13 12 11 27 27 H 1.08992 * 109.47280 * 300.00193 * 14 13 12 28 28 H 1.00900 * 110.99744 * 180.02562 * 15 14 13 29 29 H 1.00907 * 110.99952 * 303.95213 * 15 14 13 30 30 H 1.09001 * 109.47142 * 59.99766 * 16 14 13 31 31 H 1.09004 * 109.47006 * 179.97438 * 16 14 13 32 32 H 1.09001 * 109.47372 * 300.00036 * 17 16 14 33 33 H 1.09004 * 109.47368 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5054 -4.9070 -0.0001 12 6 2.4117 -5.9784 -0.6097 13 6 1.6826 -7.3235 -0.6098 14 6 1.3290 -7.7120 0.8272 15 7 0.6284 -9.0032 0.8270 16 6 0.4226 -6.6406 1.4368 17 6 1.1518 -5.2956 1.4369 18 1 -0.4850 0.8400 -0.0004 19 1 0.6247 -2.5571 -0.8897 20 1 0.6241 -2.5567 0.8903 21 1 2.8406 -3.5486 -0.7809 22 1 0.5924 -4.8249 -0.5898 23 1 3.3247 -6.0605 -0.0201 24 1 2.6639 -5.7014 -1.6334 25 1 2.3284 -8.0868 -1.0437 26 1 0.7694 -7.2417 -1.1993 27 1 2.2421 -7.7937 1.4166 28 1 0.3835 -9.2818 1.7653 29 1 -0.1881 -8.9715 0.2348 30 1 -0.4906 -6.5588 0.8473 31 1 0.1703 -6.9176 2.4604 32 1 2.0650 -5.3773 2.0264 33 1 0.5063 -4.5323 1.8716 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086725743.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:36 Heat of formation + Delta-G solvation = -27.034940 kcal Electronic energy + Delta-G solvation = -12801.834155 eV Core-core repulsion = 10667.886525 eV Total energy + Delta-G solvation = -2133.947630 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.77469 -35.21035 -32.89412 -31.25537 -30.54713 -27.48925 -25.15193 -22.64659 -21.74672 -20.54391 -19.57179 -16.51213 -15.79157 -15.25873 -14.66025 -14.59870 -13.95178 -13.76976 -13.39825 -12.56625 -12.22906 -12.09919 -11.84595 -11.38067 -11.21111 -11.03204 -10.88947 -10.71792 -10.56433 -10.13549 -9.97311 -9.71072 -9.12245 -8.66563 -8.47503 -7.26470 -6.02456 -4.04309 3.32139 3.38066 3.42948 4.42570 4.49927 4.83192 4.94945 5.14189 5.33466 5.40812 5.45782 5.58756 5.65971 5.75254 5.78860 6.03749 6.18677 6.22759 6.24907 6.41311 6.47945 6.67748 6.79102 7.09527 7.30173 7.37330 7.44228 7.80931 8.15494 8.43947 8.64923 9.05559 9.60697 11.08723 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.082791 B = 0.006621 C = 0.006396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.119732 B = 4227.676097 C = 4376.884894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.688 5.688 11 C 0.087 3.913 12 C -0.118 4.118 13 C -0.106 4.106 14 C 0.090 3.910 15 N -0.848 5.848 16 C -0.151 4.151 17 C -0.101 4.101 18 H 0.261 0.739 19 H -0.016 1.016 20 H 0.027 0.973 21 H 0.329 0.671 22 H 0.032 0.968 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.338 0.662 29 H 0.337 0.663 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.120 -13.463 0.656 13.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.318 5.318 11 C -0.024 4.024 12 C -0.157 4.157 13 C -0.145 4.145 14 C -0.022 4.022 15 N -0.376 5.376 16 C -0.191 4.191 17 C -0.140 4.140 18 H 0.071 0.929 19 H 0.002 0.998 20 H 0.045 0.955 21 H 0.145 0.855 22 H 0.050 0.950 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.729 -13.626 1.032 13.774 hybrid contribution -0.889 1.555 -0.466 1.851 sum 0.840 -12.071 0.566 12.113 Atomic orbital electron populations 1.69963 1.06107 1.26752 1.51039 1.24996 0.94869 0.99375 0.95371 0.86485 0.79811 0.83019 0.78021 1.20730 1.21252 1.19755 1.21214 0.93529 0.90319 1.50181 0.91974 1.19582 0.90597 0.87432 0.95598 1.60678 1.21154 1.01111 1.48872 1.21444 0.95371 0.90378 0.95204 1.21702 0.99141 0.94124 1.00719 1.21484 1.00486 0.96907 0.95617 1.21504 0.96950 0.86688 0.97010 1.59013 1.31796 1.30859 1.15900 1.22390 0.99266 0.97084 1.00324 1.21422 1.00231 0.94945 0.97400 0.92944 0.99801 0.95453 0.85451 0.95028 0.91288 0.92144 0.91558 0.92427 0.90220 0.85020 0.85109 0.92436 0.92481 0.91660 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -14.79 9.32 -34.44 -0.32 -15.11 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.19 5.20 5.24 -4.97 -0.03 5.17 16 10 N -0.69 -14.98 6.30 -107.99 -0.68 -15.66 16 11 C 0.09 1.55 2.49 -67.71 -0.17 1.38 16 12 C -0.12 -1.71 5.19 -26.73 -0.14 -1.85 16 13 C -0.11 -1.33 5.46 -26.73 -0.15 -1.48 16 14 C 0.09 1.07 3.25 -67.71 -0.22 0.85 16 15 N -0.85 -8.75 9.25 -4.67 -0.04 -8.79 16 16 C -0.15 -1.98 5.49 -26.73 -0.15 -2.12 16 17 C -0.10 -1.68 5.42 -26.73 -0.14 -1.83 16 18 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 19 H -0.02 -0.45 8.05 -51.93 -0.42 -0.87 16 20 H 0.03 0.79 7.44 -51.93 -0.39 0.40 16 21 H 0.33 6.84 8.34 -39.29 -0.33 6.51 16 22 H 0.03 0.62 7.80 -51.93 -0.40 0.21 16 23 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.34 2.99 9.04 -39.29 -0.36 2.64 16 29 H 0.34 3.18 8.98 -39.29 -0.35 2.83 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.20 7.46 -51.93 -0.39 0.81 16 LS Contribution 265.36 15.07 4.00 4.00 Total: -1.00 -30.05 265.36 -7.98 -38.02 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.56 Total: 5.52 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -1.41 Total: -13.49 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.01 Total: -50.92 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.05 -7.98 -38.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086725743.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.988 kcal (2) G-P(sol) polarization free energy of solvation -30.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds