Wall clock time and date at job start Mon Mar 30 2020 02:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00116 * 2 1 4 4 H 1.48499 * 109.47046 * 270.00072 * 3 2 1 5 5 H 1.48501 * 109.46849 * 29.99486 * 3 2 1 6 6 H 1.48497 * 109.47189 * 149.99693 * 3 2 1 7 7 C 1.37878 * 120.00537 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00591 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99449 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47137 * 179.97438 * 9 7 2 11 11 C 1.46896 * 111.00087 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47469 * 154.99788 * 11 10 9 13 13 C 1.52996 * 109.47486 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47165 * 300.00170 * 13 12 11 15 15 N 1.46906 * 109.46907 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.46978 * 60.00120 * 14 13 12 17 17 C 1.52996 * 109.46891 * 299.99589 * 16 14 13 18 18 H 0.96996 * 120.00050 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47422 * 59.99866 * 9 7 2 20 20 H 1.08996 * 109.47391 * 299.99724 * 9 7 2 21 21 H 1.00909 * 110.99885 * 303.95310 * 10 9 7 22 22 H 1.09001 * 109.47271 * 35.00061 * 11 10 9 23 23 H 1.09001 * 109.47109 * 59.99618 * 12 11 10 24 24 H 1.09004 * 109.47086 * 300.00091 * 12 11 10 25 25 H 1.09000 * 109.47054 * 180.02562 * 13 12 11 26 26 H 1.09001 * 109.46997 * 60.00430 * 13 12 11 27 27 H 1.08992 * 109.47280 * 300.00193 * 14 13 12 28 28 H 1.00900 * 110.99744 * 180.02562 * 15 14 13 29 29 H 1.00907 * 110.99952 * 303.95213 * 15 14 13 30 30 H 1.09001 * 109.47142 * 59.99766 * 16 14 13 31 31 H 1.09004 * 109.47006 * 179.97438 * 16 14 13 32 32 H 1.09001 * 109.47372 * 300.00036 * 17 16 14 33 33 H 1.09004 * 109.47368 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5054 -4.9070 -0.0001 12 6 2.4117 -5.9784 -0.6097 13 6 1.6826 -7.3235 -0.6098 14 6 1.3290 -7.7120 0.8272 15 7 0.6284 -9.0032 0.8270 16 6 0.4226 -6.6406 1.4368 17 6 1.1518 -5.2956 1.4369 18 1 -0.4850 0.8400 -0.0004 19 1 0.6247 -2.5571 -0.8897 20 1 0.6241 -2.5567 0.8903 21 1 2.8406 -3.5486 -0.7809 22 1 0.5924 -4.8249 -0.5898 23 1 3.3247 -6.0605 -0.0201 24 1 2.6639 -5.7014 -1.6334 25 1 2.3284 -8.0868 -1.0437 26 1 0.7694 -7.2417 -1.1993 27 1 2.2421 -7.7937 1.4166 28 1 0.3835 -9.2818 1.7653 29 1 -0.1881 -8.9715 0.2348 30 1 -0.4906 -6.5588 0.8473 31 1 0.1703 -6.9176 2.4604 32 1 2.0650 -5.3773 2.0264 33 1 0.5063 -4.5323 1.8716 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086725743.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:35 Heat of formation + Delta-G solvation = -49.754439 kcal Electronic energy + Delta-G solvation = -12802.819346 eV Core-core repulsion = 10667.886525 eV Total energy + Delta-G solvation = -2134.932821 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.01955 -36.77350 -34.80779 -32.79560 -31.73527 -29.17825 -26.82660 -24.15777 -23.34627 -21.92648 -20.82897 -18.60909 -16.90789 -16.63450 -16.46983 -16.13308 -15.36512 -15.00435 -14.83322 -14.22721 -13.90460 -13.69230 -13.11615 -12.95805 -12.85759 -12.75641 -12.32267 -12.16055 -12.05369 -11.83907 -11.45571 -11.14804 -11.08172 -10.68040 -9.57041 -9.13648 -8.24646 -6.36474 1.39939 1.42033 1.54012 2.38721 3.08517 3.38742 3.69726 3.79418 3.85889 4.21494 4.30488 4.38136 4.43049 4.55578 4.57535 4.82036 4.93560 5.01704 5.10962 5.15612 5.22619 5.23000 5.25839 5.37428 5.47974 5.62624 6.01801 6.25490 6.45856 6.63370 6.72687 6.88844 7.35037 8.87196 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.082791 B = 0.006621 C = 0.006396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.119732 B = 4227.676097 C = 4376.884894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.212 3.788 10 N -0.686 5.686 11 C 0.083 3.917 12 C -0.109 4.109 13 C -0.101 4.101 14 C 0.097 3.903 15 N -0.845 5.845 16 C -0.141 4.141 17 C -0.098 4.098 18 H 0.265 0.735 19 H -0.045 1.045 20 H -0.002 1.002 21 H 0.335 0.665 22 H 0.012 0.988 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.348 0.652 29 H 0.343 0.657 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.243 -14.251 0.626 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.084 0.916 9 C 0.084 3.916 10 N -0.317 5.317 11 C -0.027 4.027 12 C -0.147 4.147 13 C -0.140 4.140 14 C -0.014 4.014 15 N -0.374 5.374 16 C -0.181 4.181 17 C -0.137 4.137 18 H 0.074 0.926 19 H -0.027 1.027 20 H 0.016 0.984 21 H 0.152 0.848 22 H 0.031 0.969 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.162 0.838 29 H 0.156 0.844 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.856 -14.449 1.002 14.762 hybrid contribution -1.275 1.752 -0.447 2.213 sum 1.580 -12.697 0.555 12.807 Atomic orbital electron populations 1.70097 1.07927 1.28054 1.51542 1.25999 0.95799 1.03547 0.94470 0.85287 0.78467 0.77710 0.78554 1.19549 1.20669 1.18795 1.21578 0.93862 0.91460 1.50661 0.91648 1.19195 0.90594 0.89081 0.92758 1.60590 1.20405 1.01513 1.49160 1.21592 0.95187 0.89674 0.96231 1.21617 0.98611 0.93864 1.00631 1.21441 1.00501 0.95812 0.96197 1.21375 0.96809 0.86854 0.96386 1.58983 1.32255 1.29281 1.16875 1.22342 0.98946 0.95319 1.01509 1.21377 1.00036 0.96171 0.96147 0.92591 1.02737 0.98436 0.84768 0.96948 0.90681 0.91688 0.90034 0.92472 0.90074 0.83833 0.84381 0.92773 0.90934 0.91505 0.95146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.73 13.29 21.45 0.28 -57.45 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.98 44.86 29.54 68.60 2.03 46.88 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -31.46 9.32 25.60 0.24 -31.22 16 8 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 9 C 0.21 11.78 5.24 85.56 0.45 12.22 16 10 N -0.69 -30.53 6.30 -495.57 -3.12 -33.65 16 11 C 0.08 3.02 2.49 44.92 0.11 3.13 16 12 C -0.11 -3.00 5.19 30.59 0.16 -2.84 16 13 C -0.10 -2.30 5.46 30.59 0.17 -2.14 16 14 C 0.10 2.10 3.25 44.91 0.15 2.25 16 15 N -0.85 -15.05 9.25 -168.68 -1.56 -16.61 16 16 C -0.14 -3.54 5.49 30.59 0.17 -3.37 16 17 C -0.10 -3.31 5.42 30.59 0.17 -3.14 16 18 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 19 H -0.04 -2.71 8.05 -2.38 -0.02 -2.73 16 20 H 0.00 -0.15 7.44 -2.39 -0.02 -0.17 16 21 H 0.33 14.04 8.34 -89.69 -0.75 13.29 16 22 H 0.01 0.50 7.80 -2.39 -0.02 0.48 16 23 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.06 1.74 8.12 -2.38 -0.02 1.72 16 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.35 5.15 9.04 -89.69 -0.81 4.34 16 29 H 0.34 5.56 8.98 -89.69 -0.81 4.76 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.03 1.19 7.46 -2.39 -0.02 1.18 16 Total: -1.00 -65.01 265.36 -1.57 -66.58 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -1.27 Total: 18.89 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 2.07 Total: -24.65 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -4.40 Total: -107.70 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -65.01 -1.57 -66.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086725743.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.821 kcal (2) G-P(sol) polarization free energy of solvation -65.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds