Wall clock time and date at job start Mon Mar 30 2020 01:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47310 * 2 1 4 4 C 1.52996 * 109.47577 * 239.99595 * 2 1 3 5 5 C 1.52997 * 109.47165 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47592 * 60.00300 * 5 4 2 7 7 C 1.53006 * 109.46626 * 300.00035 * 6 5 4 8 8 C 1.52997 * 109.47164 * 59.99702 * 7 6 5 9 9 O 1.42900 * 109.47084 * 60.00176 * 8 7 6 10 10 C 1.50696 * 109.47238 * 179.97438 * 8 7 6 11 11 H 1.08004 * 120.00281 * 119.99568 * 10 8 7 12 12 C 1.37876 * 120.00342 * 300.00471 * 10 8 7 13 13 N 1.31514 * 119.99769 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00300 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47118 * 89.99838 * 14 12 10 16 16 H 1.48499 * 109.47293 * 209.99842 * 14 12 10 17 17 H 1.48504 * 109.47104 * 330.00087 * 14 12 10 18 18 H 1.08992 * 109.47458 * 300.00366 * 1 2 3 19 19 H 1.09001 * 109.46885 * 60.00386 * 1 2 3 20 20 H 1.08999 * 109.47330 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47502 * 179.97438 * 3 2 1 22 22 H 1.08998 * 109.47533 * 299.99827 * 3 2 1 23 23 H 1.09002 * 109.47153 * 59.99456 * 3 2 1 24 24 H 1.09000 * 109.47054 * 300.00355 * 4 2 1 25 25 H 1.09001 * 109.46997 * 60.00088 * 4 2 1 26 26 H 1.09000 * 109.47140 * 299.99954 * 5 4 2 27 27 H 1.09002 * 109.47045 * 180.02562 * 5 4 2 28 28 H 1.08993 * 109.47839 * 180.02562 * 6 5 4 29 29 H 1.09000 * 109.47160 * 59.99666 * 6 5 4 30 30 H 1.09001 * 109.46998 * 179.97438 * 7 6 5 31 31 H 1.09000 * 109.47050 * 299.99699 * 7 6 5 32 32 H 0.96696 * 114.00289 * 59.99876 * 9 8 7 33 33 H 0.97005 * 120.00032 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5700 -0.7218 -1.2487 6 6 4.0796 -1.4434 0.0005 7 6 3.5694 -0.7220 1.2497 8 6 2.0395 -0.7215 1.2493 9 8 1.5627 -2.0686 1.2491 10 6 1.5370 -0.0116 2.4800 11 1 0.9164 0.8668 2.3812 12 6 1.8696 -0.4833 3.7321 13 7 2.6250 -1.5531 3.8525 14 14 1.2474 0.3971 5.2576 15 1 -0.0613 -0.1772 5.6614 16 1 2.2252 0.2252 6.3619 17 1 1.0833 1.8432 4.9623 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 3.1300 1.4425 0.0005 22 1 1.6767 1.9563 -0.8900 23 1 1.6766 1.9563 0.8899 24 1 1.6767 -1.7490 -1.2491 25 1 1.6768 -0.2075 -2.1392 26 1 3.9337 0.3057 -1.2485 27 1 3.9334 -1.2353 -2.1389 28 1 5.1695 -1.4433 0.0011 29 1 3.7159 -2.4709 0.0004 30 1 3.9320 -1.2363 2.1398 31 1 3.9331 0.3055 1.2499 32 1 1.8476 -2.5868 2.0142 33 1 2.8587 -1.8852 4.7334 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086850543.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:26 Heat of formation + Delta-G solvation = -93.200392 kcal Electronic energy + Delta-G solvation = -14125.696282 eV Core-core repulsion = 11956.586752 eV Total energy + Delta-G solvation = -2169.109530 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.58985 -35.95926 -34.07063 -33.90531 -30.66636 -27.82902 -27.50477 -25.98027 -22.84697 -21.70889 -19.07472 -18.53279 -17.04246 -16.28461 -15.81282 -15.50616 -15.13909 -14.35072 -13.89229 -13.71306 -13.59497 -13.07386 -12.88595 -12.77580 -12.60245 -12.36736 -12.17404 -12.09363 -11.92306 -11.79135 -11.45845 -11.08854 -10.88893 -10.49405 -10.25950 -9.72388 -8.06174 -6.21989 1.39383 1.42402 1.50133 2.42979 3.13474 3.99705 4.09749 4.21064 4.42965 4.48680 4.62997 4.74353 4.90567 4.96695 5.00832 5.03695 5.06507 5.17991 5.22335 5.30154 5.39224 5.42766 5.50516 5.61320 5.68750 5.69145 5.81085 6.04463 6.22457 6.38792 6.83909 7.47574 7.64166 8.92935 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042363 B = 0.015063 C = 0.013351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.792952 B = 1858.392134 C = 2096.729667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.051 4.051 3 C -0.127 4.127 4 C -0.100 4.100 5 C -0.111 4.111 6 C -0.112 4.112 7 C -0.135 4.135 8 C 0.256 3.744 9 O -0.596 6.596 10 C -0.539 4.539 11 H 0.054 0.946 12 C 0.024 3.976 13 N -0.916 5.916 14 Si 0.946 3.054 15 H -0.282 1.282 16 H -0.285 1.285 17 H -0.272 1.272 18 H 0.040 0.960 19 H 0.058 0.942 20 H 0.036 0.964 21 H 0.054 0.946 22 H 0.063 0.937 23 H 0.042 0.958 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.368 0.632 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.786 2.915 -7.013 7.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.051 4.051 3 C -0.184 4.184 4 C -0.138 4.138 5 C -0.148 4.148 6 C -0.149 4.149 7 C -0.173 4.173 8 C 0.217 3.783 9 O -0.404 6.404 10 C -0.577 4.577 11 H 0.072 0.928 12 C -0.175 4.175 13 N -0.558 5.558 14 Si 0.773 3.227 15 H -0.208 1.208 16 H -0.211 1.211 17 H -0.196 1.196 18 H 0.059 0.941 19 H 0.076 0.924 20 H 0.055 0.945 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.216 0.784 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.589 3.015 -7.449 8.057 hybrid contribution -0.019 -0.005 1.915 1.915 sum 0.570 3.010 -5.534 6.325 Atomic orbital electron populations 1.21612 0.95503 1.00356 1.00187 1.20431 0.95160 0.95158 0.94389 1.21807 1.00804 0.94928 1.00847 1.21492 0.95761 0.99754 0.96749 1.21522 0.95553 1.00597 0.97143 1.21463 0.98767 0.99085 0.95615 1.22076 0.99180 0.98603 0.97435 1.18679 0.88960 0.79445 0.91246 1.86081 1.78468 1.26523 1.49286 1.22120 1.30792 1.12460 0.92330 0.92774 1.25622 0.94722 0.95745 1.01400 1.69715 1.37822 1.24135 1.24132 0.85746 0.77920 0.79196 0.79828 1.20785 1.21067 1.19641 0.94127 0.92350 0.94509 0.92714 0.91767 0.93870 0.93629 0.91291 0.91569 0.91207 0.92818 0.93903 0.92288 0.94199 0.78416 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.76 8.07 71.98 0.58 -4.18 16 2 C -0.05 -2.08 0.36 -52.18 -0.02 -2.10 16 3 C -0.13 -4.65 7.53 71.98 0.54 -4.11 16 4 C -0.10 -3.57 4.59 30.59 0.14 -3.43 16 5 C -0.11 -3.67 5.65 30.59 0.17 -3.50 16 6 C -0.11 -4.36 5.78 30.60 0.18 -4.18 16 7 C -0.13 -6.27 4.42 30.60 0.14 -6.14 16 8 C 0.26 12.35 0.13 -11.54 0.00 12.35 16 9 O -0.60 -30.99 10.93 -148.98 -1.63 -32.62 16 10 C -0.54 -28.55 6.79 25.60 0.17 -28.37 16 11 H 0.05 2.88 5.68 -2.91 -0.02 2.86 16 12 C 0.02 1.26 5.22 84.65 0.44 1.70 16 13 N -0.92 -49.87 9.68 21.45 0.21 -49.66 16 14 Si 0.95 43.06 29.54 68.60 2.03 45.09 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 H 0.04 1.72 6.62 -2.39 -0.02 1.70 16 19 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 20 H 0.04 1.55 7.68 -2.39 -0.02 1.53 16 21 H 0.05 1.97 4.81 -2.39 -0.01 1.96 16 22 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.04 1.71 6.62 -2.39 -0.02 1.70 16 24 H 0.04 1.77 7.68 -2.39 -0.02 1.76 16 25 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.07 2.06 6.43 -2.39 -0.02 2.04 16 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.04 1.78 7.68 -2.39 -0.02 1.76 16 30 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 31 H 0.04 1.83 6.43 -2.39 -0.02 1.81 16 32 H 0.37 20.12 7.14 -74.06 -0.53 19.59 16 33 H 0.26 13.80 8.31 -92.70 -0.77 13.03 16 Total: -1.00 -55.72 241.86 3.51 -52.21 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.56 Total: 26.95 kcal Atomic # 6 Polarization: -44.31 SS G_CDS: 2.34 Total: -41.97 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.21 Total: -49.66 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -1.63 Total: -32.62 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -55.72 3.51 -52.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086850543.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.990 kcal (2) G-P(sol) polarization free energy of solvation -55.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds