Wall clock time and date at job start Mon Mar 30 2020 02:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00518 * 2 1 4 4 H 1.48500 * 109.47216 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47099 * 300.00350 * 3 2 1 6 6 H 1.48503 * 109.46964 * 59.99974 * 3 2 1 7 7 C 1.37879 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00192 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00107 * 0.02562 * 7 2 1 10 10 N 1.46890 * 109.47283 * 179.97438 * 9 7 2 11 11 C 1.46905 * 111.00008 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47192 * 180.02562 * 11 10 9 13 13 H 1.09004 * 109.50613 * 54.91928 * 12 11 10 14 14 C 1.53123 * 109.50251 * 174.99688 * 12 11 10 15 15 C 1.53120 * 109.15816 * 177.59563 * 14 12 11 16 16 C 1.53042 * 109.27821 * 302.34409 * 15 14 12 17 17 N 1.46848 * 109.52160 * 59.18425 * 16 15 14 18 18 C 1.46847 * 111.19556 * 298.25623 * 17 16 15 19 19 H 0.97000 * 119.99716 * 359.97438 * 1 2 3 20 20 H 1.09008 * 109.46872 * 59.99449 * 9 7 2 21 21 H 1.08997 * 109.46908 * 300.00055 * 9 7 2 22 22 H 1.00905 * 111.00387 * 56.04696 * 10 9 7 23 23 H 1.08991 * 109.47128 * 59.99944 * 11 10 9 24 24 H 1.09000 * 109.46946 * 299.99918 * 11 10 9 25 25 H 1.08996 * 109.51946 * 57.69046 * 14 12 11 26 26 H 1.09000 * 109.52220 * 297.49907 * 14 12 11 27 27 H 1.08997 * 109.49895 * 182.40861 * 15 14 12 28 28 H 1.08999 * 109.53885 * 62.30532 * 15 14 12 29 29 H 1.08995 * 109.46577 * 299.16647 * 16 15 14 30 30 H 1.08994 * 109.45929 * 179.19867 * 16 15 14 31 31 H 1.00901 * 111.00066 * 62.35005 * 17 16 15 32 32 H 1.09000 * 109.46087 * 181.75730 * 18 17 16 33 33 H 1.09004 * 109.46240 * 301.72671 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2054 -3.6157 0.0005 11 6 1.5051 -4.9071 -0.0001 12 6 2.5299 -6.0431 0.0006 13 1 3.2116 -5.9179 0.8419 14 6 1.8046 -7.3858 0.1258 15 6 2.8321 -8.5195 0.0653 16 6 3.6158 -8.4217 -1.2456 17 7 4.2918 -7.1201 -1.3171 18 6 3.3224 -6.0171 -1.3083 19 1 -0.4850 0.8401 0.0004 20 1 0.6245 -2.5571 -0.8897 21 1 0.6239 -2.5567 0.8903 22 1 2.8403 -3.5488 0.7819 23 1 0.8805 -4.9812 -0.8902 24 1 0.8799 -4.9817 0.8897 25 1 1.0942 -7.4939 -0.6937 26 1 1.2738 -7.4258 1.0770 27 1 2.3178 -9.4795 0.1110 28 1 3.5191 -8.4343 0.9072 29 1 2.9302 -8.5216 -2.0870 30 1 4.3578 -9.2190 -1.2854 31 1 4.9615 -7.0188 -0.5693 32 1 3.8515 -5.0679 -1.3937 33 1 2.6381 -6.1283 -2.1495 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087646243.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:07 Heat of formation + Delta-G solvation = -21.917118 kcal Electronic energy + Delta-G solvation = -12665.107127 eV Core-core repulsion = 10531.381423 eV Total energy + Delta-G solvation = -2133.725704 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.88690 -35.29748 -32.76872 -31.59808 -30.66150 -26.84430 -24.21149 -23.44204 -21.70727 -20.90942 -20.01538 -16.41164 -15.77839 -15.30026 -14.63529 -14.58245 -14.22049 -13.81036 -13.38143 -12.51426 -12.39908 -12.00794 -11.92457 -11.63769 -11.23240 -11.13700 -10.90832 -10.74594 -10.67016 -10.37588 -10.26526 -9.78963 -9.14646 -8.48713 -8.21681 -7.27015 -6.02741 -4.04641 3.31632 3.38801 3.44125 4.41730 4.44547 4.75623 4.93223 4.97369 5.16673 5.33337 5.35852 5.55176 5.60165 5.72465 5.74661 5.93400 5.98299 6.03432 6.09608 6.18944 6.34999 6.51775 6.62210 7.15290 7.25995 7.42922 7.48729 7.79527 8.13511 8.39936 8.62102 9.05149 9.60462 11.08541 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.075184 B = 0.006270 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.328277 B = 4464.918496 C = 4705.125096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.688 5.688 11 C 0.067 3.933 12 C -0.119 4.119 13 H 0.063 0.937 14 C -0.115 4.115 15 C -0.156 4.156 16 C 0.056 3.944 17 N -0.690 5.690 18 C 0.069 3.931 19 H 0.261 0.739 20 H 0.027 0.973 21 H -0.015 1.015 22 H 0.327 0.673 23 H 0.063 0.937 24 H 0.016 0.984 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.337 0.663 32 H 0.092 0.908 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.996 -14.580 0.342 15.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.318 5.318 11 C -0.064 4.064 12 C -0.140 4.140 13 H 0.082 0.918 14 C -0.153 4.153 15 C -0.195 4.195 16 C -0.074 4.074 17 N -0.317 5.317 18 C -0.060 4.060 19 H 0.070 0.930 20 H 0.045 0.955 21 H 0.003 0.997 22 H 0.143 0.857 23 H 0.082 0.918 24 H 0.034 0.966 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.154 0.846 32 H 0.110 0.890 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.986 -14.451 -1.068 15.324 hybrid contribution -0.448 0.882 1.971 2.206 sum 4.538 -13.568 0.903 14.336 Atomic orbital electron populations 1.69976 1.06119 1.26667 1.51081 1.25002 0.94874 0.99418 0.95360 0.86424 0.80075 0.83313 0.77491 1.19627 1.20977 1.21122 1.21235 0.93554 0.90244 1.50114 0.91892 1.19552 0.90633 0.87473 0.95698 1.60660 1.21175 1.01281 1.48687 1.21853 0.94868 0.90034 0.99639 1.21870 0.98241 0.94212 0.99638 0.91814 1.21599 0.97721 0.94223 1.01805 1.22254 0.99071 0.98878 0.99318 1.22011 0.97183 0.91924 0.96314 1.60733 1.17429 1.02102 1.51427 1.22023 0.93984 0.94364 0.95607 0.92981 0.95464 0.99748 0.85740 0.91820 0.96624 0.91887 0.92292 0.91894 0.92267 0.91152 0.91317 0.84603 0.88966 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.71 9.32 -34.44 -0.32 -15.03 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.19 5.14 5.44 -4.98 -0.03 5.12 16 10 N -0.69 -14.75 5.97 -115.06 -0.69 -15.44 16 11 C 0.07 1.19 5.08 -3.82 -0.02 1.17 16 12 C -0.12 -1.69 2.48 -90.54 -0.22 -1.92 16 13 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 14 C -0.12 -1.40 5.29 -26.61 -0.14 -1.54 16 15 C -0.16 -1.60 6.08 -26.65 -0.16 -1.76 16 16 C 0.06 0.59 6.55 -3.83 -0.03 0.57 16 17 N -0.69 -8.59 6.87 -113.82 -0.78 -9.38 16 18 C 0.07 1.00 5.72 -3.84 -0.02 0.98 16 19 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 20 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 21 H -0.02 -0.43 8.14 -51.93 -0.42 -0.86 16 22 H 0.33 6.72 8.72 -39.29 -0.34 6.38 16 23 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.34 3.85 8.86 -39.29 -0.35 3.50 16 32 H 0.09 1.51 7.79 -51.93 -0.40 1.10 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 267.58 15.07 4.03 4.03 Total: -1.00 -29.66 267.58 -8.47 -38.13 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.71 Total: 3.20 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -1.04 Total: -10.94 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.73 Total: -51.28 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.66 -8.47 -38.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087646243.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.214 kcal (2) G-P(sol) polarization free energy of solvation -29.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds