Wall clock time and date at job start Mon Mar 30 2020 02:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00518 * 2 1 4 4 H 1.48500 * 109.47216 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47099 * 300.00350 * 3 2 1 6 6 H 1.48503 * 109.46964 * 59.99974 * 3 2 1 7 7 C 1.37879 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00192 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00107 * 0.02562 * 7 2 1 10 10 N 1.46890 * 109.47283 * 179.97438 * 9 7 2 11 11 C 1.46905 * 111.00008 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47192 * 180.02562 * 11 10 9 13 13 H 1.09004 * 109.50613 * 54.91928 * 12 11 10 14 14 C 1.53123 * 109.50251 * 174.99688 * 12 11 10 15 15 C 1.53120 * 109.15816 * 177.59563 * 14 12 11 16 16 C 1.53042 * 109.27821 * 302.34409 * 15 14 12 17 17 N 1.46848 * 109.52160 * 59.18425 * 16 15 14 18 18 C 1.46847 * 111.19556 * 298.25623 * 17 16 15 19 19 H 0.97000 * 119.99716 * 359.97438 * 1 2 3 20 20 H 1.09008 * 109.46872 * 59.99449 * 9 7 2 21 21 H 1.08997 * 109.46908 * 300.00055 * 9 7 2 22 22 H 1.00905 * 111.00387 * 56.04696 * 10 9 7 23 23 H 1.08991 * 109.47128 * 59.99944 * 11 10 9 24 24 H 1.09000 * 109.46946 * 299.99918 * 11 10 9 25 25 H 1.08996 * 109.51946 * 57.69046 * 14 12 11 26 26 H 1.09000 * 109.52220 * 297.49907 * 14 12 11 27 27 H 1.08997 * 109.49895 * 182.40861 * 15 14 12 28 28 H 1.08999 * 109.53885 * 62.30532 * 15 14 12 29 29 H 1.08995 * 109.46577 * 299.16647 * 16 15 14 30 30 H 1.08994 * 109.45929 * 179.19867 * 16 15 14 31 31 H 1.00901 * 111.00066 * 62.35005 * 17 16 15 32 32 H 1.09000 * 109.46087 * 181.75730 * 18 17 16 33 33 H 1.09004 * 109.46240 * 301.72671 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2054 -3.6157 0.0005 11 6 1.5051 -4.9071 -0.0001 12 6 2.5299 -6.0431 0.0006 13 1 3.2116 -5.9179 0.8419 14 6 1.8046 -7.3858 0.1258 15 6 2.8321 -8.5195 0.0653 16 6 3.6158 -8.4217 -1.2456 17 7 4.2918 -7.1201 -1.3171 18 6 3.3224 -6.0171 -1.3083 19 1 -0.4850 0.8401 0.0004 20 1 0.6245 -2.5571 -0.8897 21 1 0.6239 -2.5567 0.8903 22 1 2.8403 -3.5488 0.7819 23 1 0.8805 -4.9812 -0.8902 24 1 0.8799 -4.9817 0.8897 25 1 1.0942 -7.4939 -0.6937 26 1 1.2738 -7.4258 1.0770 27 1 2.3178 -9.4795 0.1110 28 1 3.5191 -8.4343 0.9072 29 1 2.9302 -8.5216 -2.0870 30 1 4.3578 -9.2190 -1.2854 31 1 4.9615 -7.0188 -0.5693 32 1 3.8515 -5.0679 -1.3937 33 1 2.6381 -6.1283 -2.1495 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087646243.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:07 Heat of formation + Delta-G solvation = -43.915459 kcal Electronic energy + Delta-G solvation = -12666.061047 eV Core-core repulsion = 10531.381423 eV Total energy + Delta-G solvation = -2134.679624 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.98630 -36.99560 -34.73979 -32.81174 -31.95735 -28.73997 -25.78574 -24.50039 -23.53209 -22.23373 -21.13409 -18.56505 -16.92056 -16.74158 -16.45685 -15.77299 -15.53716 -15.18988 -14.85906 -14.26971 -13.74849 -13.48930 -13.19846 -13.06700 -12.91814 -12.63615 -12.50007 -12.16590 -12.11079 -11.87957 -11.53065 -11.43283 -11.05831 -10.68538 -9.30221 -9.05069 -8.24085 -6.35592 1.40954 1.42026 1.56090 2.39558 3.09440 3.41295 3.52821 3.78628 3.97192 4.12660 4.18203 4.38119 4.55446 4.66802 4.67633 4.70053 4.79772 5.03409 5.06631 5.07531 5.15695 5.18285 5.23894 5.32998 5.45939 5.60408 6.00109 6.13986 6.42057 6.55675 6.70468 6.87615 7.35807 8.88032 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.075184 B = 0.006270 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.328277 B = 4464.918496 C = 4705.125096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.535 4.535 8 H 0.066 0.934 9 C 0.207 3.793 10 N -0.683 5.683 11 C 0.068 3.932 12 C -0.107 4.107 13 H 0.068 0.932 14 C -0.114 4.114 15 C -0.148 4.148 16 C 0.054 3.946 17 N -0.693 5.693 18 C 0.077 3.923 19 H 0.265 0.735 20 H -0.002 1.002 21 H -0.042 1.042 22 H 0.334 0.666 23 H 0.053 0.947 24 H 0.012 0.988 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.345 0.655 32 H 0.069 0.931 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.346 -15.294 0.641 16.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.079 3.921 10 N -0.313 5.313 11 C -0.062 4.062 12 C -0.127 4.127 13 H 0.087 0.913 14 C -0.152 4.152 15 C -0.187 4.187 16 C -0.075 4.075 17 N -0.321 5.321 18 C -0.052 4.052 19 H 0.074 0.926 20 H 0.016 0.984 21 H -0.024 1.024 22 H 0.151 0.849 23 H 0.072 0.928 24 H 0.031 0.969 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.163 0.837 32 H 0.088 0.912 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.352 -15.198 -0.763 16.490 hybrid contribution -0.894 1.036 1.867 2.315 sum 5.458 -14.162 1.104 15.217 Atomic orbital electron populations 1.70103 1.07912 1.27997 1.51634 1.25994 0.95798 1.03544 0.94517 0.85240 0.78935 0.78077 0.77764 1.18543 1.20373 1.20239 1.21583 0.93862 0.91356 1.50494 0.91604 1.19208 0.90700 0.89162 0.93002 1.60530 1.20312 1.01429 1.49040 1.21927 0.95763 0.89590 0.98953 1.21762 0.97295 0.93867 0.99810 0.91339 1.21590 0.98149 0.93545 1.01916 1.22196 0.98553 0.98723 0.99212 1.22100 0.97689 0.91295 0.96433 1.60698 1.17145 1.02283 1.52002 1.21805 0.93912 0.94329 0.95191 0.92591 0.98404 1.02414 0.84930 0.92806 0.96947 0.92133 0.91966 0.89993 0.91619 0.91554 0.89244 0.83749 0.91214 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.46 13.29 21.45 0.28 -57.18 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.98 44.72 29.54 68.60 2.03 46.75 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.53 -31.04 9.32 25.60 0.24 -30.80 16 8 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 9 C 0.21 11.41 5.44 85.56 0.47 11.87 16 10 N -0.68 -29.81 5.97 -517.94 -3.09 -32.90 16 11 C 0.07 2.46 5.08 86.30 0.44 2.89 16 12 C -0.11 -2.94 2.48 -10.74 -0.03 -2.97 16 13 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 14 C -0.11 -2.57 5.29 30.68 0.16 -2.41 16 15 C -0.15 -2.59 6.08 30.65 0.19 -2.41 16 16 C 0.05 1.01 6.55 86.33 0.57 1.58 16 17 N -0.69 -16.05 6.87 -514.01 -3.53 -19.58 16 18 C 0.08 2.19 5.72 86.32 0.49 2.68 16 19 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 20 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 21 H -0.04 -2.47 8.14 -2.39 -0.02 -2.49 16 22 H 0.33 13.78 8.72 -89.69 -0.78 13.00 16 23 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.34 7.14 8.86 -89.69 -0.79 6.34 16 32 H 0.07 2.28 7.79 -2.39 -0.02 2.26 16 33 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -63.58 267.58 -1.83 -65.40 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -0.50 Total: 16.63 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 2.99 Total: -19.12 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -6.34 Total: -109.65 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -63.58 -1.83 -65.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087646243.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.488 kcal (2) G-P(sol) polarization free energy of solvation -63.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds