Wall clock time and date at job start Mon Mar 30 2020 02:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99894 * 2 1 4 4 H 1.48507 * 109.46677 * 270.00005 * 3 2 1 5 5 H 1.48498 * 109.47021 * 29.99599 * 3 2 1 6 6 H 1.48499 * 109.47329 * 150.00146 * 3 2 1 7 7 C 1.37881 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99877 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99831 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46905 * 111.00150 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47253 * 180.02562 * 11 10 9 13 13 H 1.08997 * 109.50238 * 304.92307 * 12 11 10 14 14 C 1.53120 * 109.50294 * 184.79913 * 12 11 10 15 15 C 1.53120 * 109.15972 * 182.40242 * 14 12 11 16 16 C 1.53034 * 109.27663 * 57.65936 * 15 14 12 17 17 N 1.46850 * 109.52564 * 300.81923 * 16 15 14 18 18 C 1.46850 * 111.19713 * 61.73898 * 17 16 15 19 19 H 0.96992 * 120.00367 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47132 * 60.00466 * 9 7 2 21 21 H 1.08999 * 109.47264 * 300.00304 * 9 7 2 22 22 H 1.00901 * 110.99912 * 56.05380 * 10 9 7 23 23 H 1.08993 * 109.47023 * 59.99711 * 11 10 9 24 24 H 1.09001 * 109.46808 * 299.99950 * 11 10 9 25 25 H 1.08996 * 109.52458 * 302.31577 * 14 12 11 26 26 H 1.08999 * 109.51695 * 62.43858 * 14 12 11 27 27 H 1.09000 * 109.49976 * 177.59581 * 15 14 12 28 28 H 1.09002 * 109.50465 * 297.67936 * 15 14 12 29 29 H 1.09007 * 109.46201 * 60.83416 * 16 15 14 30 30 H 1.09001 * 109.46285 * 180.81057 * 16 15 14 31 31 H 1.00901 * 110.99645 * 297.64705 * 17 16 15 32 32 H 1.08995 * 109.45831 * 178.23975 * 18 17 16 33 33 H 1.08998 * 109.45719 * 58.27825 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2057 -3.6156 0.0027 11 6 1.5054 -4.9071 0.0032 12 6 2.5304 -6.0430 0.0049 13 1 3.2115 -5.9198 -0.8371 14 6 1.8050 -7.3862 -0.1153 15 6 2.8326 -8.5196 -0.0524 16 6 3.6178 -8.4177 1.2572 17 7 4.2938 -7.1157 1.3240 18 6 3.3243 -6.0128 1.3129 19 1 -0.4850 0.8399 0.0004 20 1 0.6242 -2.5575 -0.8880 21 1 0.6248 -2.5563 0.8919 22 1 2.8405 -3.5479 0.7841 23 1 0.8809 -4.9820 -0.8868 24 1 0.8803 -4.9809 0.8931 25 1 1.0955 -7.4917 0.7054 26 1 1.2722 -7.4285 -1.0652 27 1 2.3183 -9.4797 -0.0946 28 1 3.5181 -8.4365 -0.8958 29 1 2.9330 -8.5150 2.0997 30 1 4.3601 -9.2148 1.2985 31 1 4.9627 -7.0168 0.5751 32 1 3.8534 -5.0635 1.3949 33 1 2.6410 -6.1215 2.1551 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087646245.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:09 Heat of formation + Delta-G solvation = -43.789299 kcal Electronic energy + Delta-G solvation = -12675.110919 eV Core-core repulsion = 10540.436766 eV Total energy + Delta-G solvation = -2134.674153 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.05497 -36.99923 -34.74935 -32.84951 -31.95799 -28.72460 -25.86280 -24.65629 -23.51306 -22.16294 -21.10089 -18.60072 -17.13855 -16.63268 -16.58131 -15.73699 -15.41147 -15.27174 -14.80586 -14.32792 -13.80858 -13.63188 -13.34860 -13.10104 -12.74369 -12.65046 -12.42196 -12.19455 -12.04284 -11.97424 -11.56507 -11.47981 -11.06674 -10.67765 -9.25655 -9.15258 -8.24253 -6.36169 1.41101 1.43244 1.54696 2.39432 3.09019 3.38061 3.49482 3.85284 3.94289 3.98647 4.19336 4.38905 4.49404 4.57035 4.66090 4.75572 4.79483 4.99911 5.02662 5.04141 5.12043 5.19454 5.23454 5.25486 5.42979 5.59937 5.99447 6.08268 6.41006 6.50198 6.70049 6.86673 7.35184 8.87639 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.075435 B = 0.006275 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.089037 B = 4461.313042 C = 4705.191870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.207 3.793 10 N -0.688 5.688 11 C 0.068 3.932 12 C -0.108 4.108 13 H 0.071 0.929 14 C -0.113 4.113 15 C -0.148 4.148 16 C 0.055 3.945 17 N -0.689 5.689 18 C 0.066 3.934 19 H 0.266 0.734 20 H -0.002 1.002 21 H -0.040 1.040 22 H 0.335 0.665 23 H 0.053 0.947 24 H 0.014 0.986 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.346 0.654 32 H 0.068 0.932 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.338 -15.343 1.292 16.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.576 4.576 8 H 0.084 0.916 9 C 0.079 3.921 10 N -0.319 5.319 11 C -0.063 4.063 12 C -0.129 4.129 13 H 0.089 0.911 14 C -0.151 4.151 15 C -0.187 4.187 16 C -0.075 4.075 17 N -0.318 5.318 18 C -0.064 4.064 19 H 0.074 0.926 20 H 0.016 0.984 21 H -0.023 1.023 22 H 0.153 0.847 23 H 0.071 0.929 24 H 0.032 0.968 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.164 0.836 32 H 0.087 0.913 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.344 -15.243 1.322 16.564 hybrid contribution -0.872 1.023 -0.168 1.355 sum 5.472 -14.220 1.154 15.280 Atomic orbital electron populations 1.70093 1.07910 1.28102 1.51456 1.25999 0.95811 1.03546 0.94431 0.85283 0.78515 0.77688 0.78507 1.19790 1.20601 1.18600 1.21553 0.93854 0.91391 1.50792 0.91641 1.19212 0.90718 0.89148 0.93051 1.60581 1.20491 1.01564 1.49293 1.21923 0.95775 0.89558 0.99004 1.21773 0.97451 0.93911 0.99742 0.91102 1.21578 0.98119 0.93446 1.01995 1.22199 0.98569 0.98745 0.99231 1.22108 0.97728 0.91201 0.96451 1.60689 1.16933 1.02173 1.51972 1.21964 0.94188 0.94724 0.95569 0.92551 0.98430 1.02279 0.84666 0.92883 0.96758 0.92118 0.91920 0.89932 0.91690 0.91392 0.89131 0.83616 0.91332 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.50 13.29 21.45 0.28 -57.21 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.98 44.75 29.54 68.60 2.03 46.78 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.54 -31.40 9.32 25.60 0.24 -31.16 16 8 H 0.07 3.70 7.81 -2.91 -0.02 3.67 16 9 C 0.21 11.47 5.44 85.56 0.47 11.93 16 10 N -0.69 -30.51 6.49 -517.95 -3.36 -33.87 16 11 C 0.07 2.47 5.15 86.30 0.44 2.92 16 12 C -0.11 -3.01 2.55 -10.74 -0.03 -3.03 16 13 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 14 C -0.11 -2.56 5.29 30.67 0.16 -2.40 16 15 C -0.15 -2.60 6.08 30.65 0.19 -2.41 16 16 C 0.05 0.98 6.55 86.32 0.57 1.55 16 17 N -0.69 -15.26 6.87 -514.00 -3.53 -18.79 16 18 C 0.07 1.74 5.59 86.33 0.48 2.22 16 19 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 20 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 21 H -0.04 -2.41 8.14 -2.39 -0.02 -2.43 16 22 H 0.34 14.03 7.00 -89.69 -0.63 13.40 16 23 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.35 6.99 8.86 -89.69 -0.79 6.19 16 32 H 0.07 1.98 6.72 -2.39 -0.02 1.97 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -64.00 265.31 -1.94 -65.95 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -0.34 Total: 17.07 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 2.98 Total: -19.91 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -6.61 Total: -109.88 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.00 -1.94 -65.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087646245.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.158 kcal (2) G-P(sol) polarization free energy of solvation -64.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds