Wall clock time and date at job start Mon Mar 30 2020 02:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47231 * 2 1 4 4 H 1.08998 * 109.48358 * 304.98228 * 3 2 1 5 5 C 1.53090 * 109.49212 * 184.94864 * 3 2 1 6 6 C 1.53176 * 109.16624 * 182.40372 * 5 3 2 7 7 H 1.08998 * 109.61630 * 297.07493 * 6 5 3 8 8 C 1.53004 * 109.54504 * 176.84658 * 6 5 3 9 9 C 1.50699 * 109.46843 * 175.44524 * 8 6 5 10 10 H 1.08002 * 120.00516 * 359.97438 * 9 8 6 11 11 C 1.37884 * 119.99783 * 180.02562 * 9 8 6 12 12 N 1.31514 * 119.99707 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99956 * 180.27458 * 11 9 8 14 14 H 1.48503 * 109.47407 * 269.72718 * 13 11 9 15 15 H 1.48505 * 109.47281 * 29.72474 * 13 11 9 16 16 H 1.48501 * 109.47274 * 149.72572 * 13 11 9 17 17 C 1.53180 * 109.03218 * 56.98213 * 6 5 3 18 18 C 1.53088 * 109.16505 * 303.01827 * 17 6 5 19 19 O 1.42901 * 109.41516 * 57.60983 * 18 17 6 20 20 H 1.08998 * 109.47022 * 299.99778 * 1 2 3 21 21 H 1.08997 * 109.47419 * 59.99863 * 1 2 3 22 22 H 1.09003 * 109.47326 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47285 * 239.99862 * 2 1 3 24 24 H 1.09002 * 109.47684 * 120.00499 * 2 1 3 25 25 H 1.08998 * 109.52205 * 62.49919 * 5 3 2 26 26 H 1.09002 * 109.52274 * 302.31266 * 5 3 2 27 27 H 1.09001 * 109.46361 * 55.44866 * 8 6 5 28 28 H 1.08997 * 109.46991 * 295.44757 * 8 6 5 29 29 H 0.97005 * 119.99656 * 179.97438 * 12 11 9 30 30 H 1.08997 * 109.52485 * 62.93172 * 17 6 5 31 31 H 1.09007 * 109.51863 * 183.11358 * 17 6 5 32 32 H 1.09002 * 109.48277 * 177.59530 * 18 17 6 33 33 H 1.09003 * 109.48115 * 297.61531 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9816 -0.8419 5 6 3.5658 1.4448 -0.1245 6 6 4.0731 2.8888 -0.0633 7 1 3.6808 3.4507 -0.9109 8 6 5.6025 2.8963 -0.1080 9 6 6.0965 4.3191 -0.1605 10 1 5.3903 5.1362 -0.1624 11 6 7.4500 4.5776 -0.2073 12 7 8.3099 3.5825 -0.2066 13 14 8.0626 6.3413 -0.2648 14 1 8.1888 6.7758 -1.6792 15 1 7.0980 7.2236 0.4398 16 1 9.3880 6.4269 0.3994 17 6 3.5955 3.5312 1.2427 18 6 2.0685 3.4483 1.3144 19 8 1.6620 2.0815 1.2211 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 3.8543 0.9974 -1.0756 26 1 3.9990 0.8714 0.6951 27 1 5.9426 2.3606 -0.9942 28 1 5.9944 2.4083 0.7844 29 1 9.2622 3.7644 -0.2399 30 1 4.0293 3.0001 2.0899 31 1 3.9053 4.5760 1.2692 32 1 1.7259 3.8657 2.2613 33 1 1.6346 4.0139 0.4897 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107403492.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:37 Heat of formation + Delta-G solvation = -84.537501 kcal Electronic energy + Delta-G solvation = -13006.091631 eV Core-core repulsion = 10837.357752 eV Total energy + Delta-G solvation = -2168.733879 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.09230 -34.64660 -33.67659 -32.20208 -29.41326 -27.95485 -24.63515 -23.02692 -22.11747 -20.45697 -19.07620 -16.34146 -16.00126 -15.45297 -14.45604 -14.26307 -13.93051 -13.49179 -13.27855 -12.86671 -12.18647 -11.90775 -11.57595 -11.26752 -11.11468 -10.91533 -10.76112 -10.67205 -10.59691 -10.26045 -10.01584 -9.59346 -9.51713 -8.98531 -8.62080 -8.33807 -5.98697 -4.00525 3.31721 3.38210 3.41049 4.15721 4.46176 5.01156 5.22205 5.35844 5.36530 5.49924 5.59329 5.68835 5.75688 5.79640 5.89747 6.02387 6.04740 6.12931 6.27641 6.37718 6.47219 6.53460 6.68164 6.94477 7.05701 7.15059 7.66432 7.68423 7.83827 8.01334 8.44323 9.05831 9.63044 11.12664 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.068770 B = 0.007683 C = 0.007161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.058563 B = 3643.632470 C = 3909.287164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.090 3.910 4 H 0.051 0.949 5 C -0.144 4.144 6 C -0.083 4.083 7 H 0.055 0.945 8 C 0.028 3.972 9 C -0.516 4.516 10 H 0.055 0.945 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.890 3.110 14 H -0.281 1.281 15 H -0.274 1.274 16 H -0.287 1.287 17 C -0.139 4.139 18 C 0.061 3.939 19 O -0.386 6.386 20 H 0.060 0.940 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.015 0.985 28 H 0.016 0.984 29 H 0.260 0.740 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.228 -3.790 0.684 12.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.033 3.967 4 H 0.069 0.931 5 C -0.182 4.182 6 C -0.101 4.101 7 H 0.073 0.927 8 C -0.009 4.009 9 C -0.554 4.554 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.718 3.282 14 H -0.207 1.207 15 H -0.199 1.199 16 H -0.213 1.213 17 C -0.176 4.176 18 C -0.016 4.016 19 O -0.305 6.305 20 H 0.079 0.921 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.033 0.967 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -12.141 -3.924 0.833 12.786 hybrid contribution 0.732 1.159 -0.277 1.398 sum -11.409 -2.765 0.556 11.752 Atomic orbital electron populations 1.21715 0.95796 1.00964 1.02055 1.21551 0.96107 0.95211 1.02501 1.22137 0.94731 0.93041 0.86802 0.93130 1.22309 0.94461 0.99330 1.02089 1.21251 0.99954 0.92800 0.96116 0.92666 1.19120 0.87638 0.96958 0.97147 1.21249 0.91493 0.92542 1.50134 0.92676 1.25027 0.97112 0.96889 0.95480 1.69969 1.01886 1.30718 1.50986 0.86630 0.78212 0.85284 0.78086 1.20737 1.19909 1.21260 1.22138 0.93771 1.02629 0.99087 1.22636 0.95741 0.82455 1.00770 1.87814 1.78740 1.25163 1.38811 0.92094 0.93171 0.93205 0.90909 0.91307 0.91695 0.91618 0.96664 0.96547 0.93059 0.91859 0.90414 0.89830 0.94015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.81 37.15 0.36 -1.32 16 2 C -0.12 -1.51 5.64 -26.74 -0.15 -1.66 16 3 C 0.09 1.41 2.64 -26.69 -0.07 1.34 16 4 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.14 -2.58 4.71 -26.59 -0.13 -2.71 16 6 C -0.08 -1.72 2.23 -90.43 -0.20 -1.92 16 7 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 8 C 0.03 0.74 4.46 -27.88 -0.12 0.61 16 9 C -0.52 -14.49 8.45 -34.44 -0.29 -14.78 16 10 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 13 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 C -0.14 -2.66 5.18 -26.59 -0.14 -2.80 16 18 C 0.06 0.98 6.84 37.20 0.25 1.23 16 19 O -0.39 -6.49 9.94 -35.23 -0.35 -6.84 16 20 H 0.06 0.74 7.82 -51.93 -0.41 0.34 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.08 1.56 7.06 -51.93 -0.37 1.19 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 265.60 15.07 4.00 4.00 Total: -1.00 -29.84 265.60 -6.99 -36.82 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -5.77 Total: -3.79 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -0.58 Total: -20.50 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.74 Total: -26.36 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.35 Total: -6.84 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.84 -6.99 -36.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107403492.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.715 kcal (2) G-P(sol) polarization free energy of solvation -29.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds