Wall clock time and date at job start Mon Mar 30 2020 02:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47231 * 2 1 4 4 H 1.08998 * 109.48358 * 304.98228 * 3 2 1 5 5 C 1.53090 * 109.49212 * 184.94864 * 3 2 1 6 6 C 1.53176 * 109.16624 * 182.40372 * 5 3 2 7 7 H 1.08998 * 109.61630 * 297.07493 * 6 5 3 8 8 C 1.53004 * 109.54504 * 176.84658 * 6 5 3 9 9 C 1.50699 * 109.46843 * 175.44524 * 8 6 5 10 10 H 1.08002 * 120.00516 * 359.97438 * 9 8 6 11 11 C 1.37884 * 119.99783 * 180.02562 * 9 8 6 12 12 N 1.31514 * 119.99707 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99956 * 180.27458 * 11 9 8 14 14 H 1.48503 * 109.47407 * 269.72718 * 13 11 9 15 15 H 1.48505 * 109.47281 * 29.72474 * 13 11 9 16 16 H 1.48501 * 109.47274 * 149.72572 * 13 11 9 17 17 C 1.53180 * 109.03218 * 56.98213 * 6 5 3 18 18 C 1.53088 * 109.16505 * 303.01827 * 17 6 5 19 19 O 1.42901 * 109.41516 * 57.60983 * 18 17 6 20 20 H 1.08998 * 109.47022 * 299.99778 * 1 2 3 21 21 H 1.08997 * 109.47419 * 59.99863 * 1 2 3 22 22 H 1.09003 * 109.47326 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47285 * 239.99862 * 2 1 3 24 24 H 1.09002 * 109.47684 * 120.00499 * 2 1 3 25 25 H 1.08998 * 109.52205 * 62.49919 * 5 3 2 26 26 H 1.09002 * 109.52274 * 302.31266 * 5 3 2 27 27 H 1.09001 * 109.46361 * 55.44866 * 8 6 5 28 28 H 1.08997 * 109.46991 * 295.44757 * 8 6 5 29 29 H 0.97005 * 119.99656 * 179.97438 * 12 11 9 30 30 H 1.08997 * 109.52485 * 62.93172 * 17 6 5 31 31 H 1.09007 * 109.51863 * 183.11358 * 17 6 5 32 32 H 1.09002 * 109.48277 * 177.59530 * 18 17 6 33 33 H 1.09003 * 109.48115 * 297.61531 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9816 -0.8419 5 6 3.5658 1.4448 -0.1245 6 6 4.0731 2.8888 -0.0633 7 1 3.6808 3.4507 -0.9109 8 6 5.6025 2.8963 -0.1080 9 6 6.0965 4.3191 -0.1605 10 1 5.3903 5.1362 -0.1624 11 6 7.4500 4.5776 -0.2073 12 7 8.3099 3.5825 -0.2066 13 14 8.0626 6.3413 -0.2648 14 1 8.1888 6.7758 -1.6792 15 1 7.0980 7.2236 0.4398 16 1 9.3880 6.4269 0.3994 17 6 3.5955 3.5312 1.2427 18 6 2.0685 3.4483 1.3144 19 8 1.6620 2.0815 1.2211 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 3.8543 0.9974 -1.0756 26 1 3.9990 0.8714 0.6951 27 1 5.9426 2.3606 -0.9942 28 1 5.9944 2.4083 0.7844 29 1 9.2622 3.7644 -0.2399 30 1 4.0293 3.0001 2.0899 31 1 3.9053 4.5760 1.2692 32 1 1.7259 3.8657 2.2613 33 1 1.6346 4.0139 0.4897 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107403492.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:37 Heat of formation + Delta-G solvation = -101.997115 kcal Electronic energy + Delta-G solvation = -13006.848736 eV Core-core repulsion = 10837.357752 eV Total energy + Delta-G solvation = -2169.490985 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.47843 -36.39754 -34.82099 -34.23901 -30.67402 -29.86253 -26.32163 -24.44706 -23.71534 -21.74199 -20.72739 -18.49733 -17.28777 -16.87724 -16.43063 -15.65707 -15.35767 -14.91650 -14.49545 -14.16918 -13.97803 -13.73811 -13.16606 -12.73526 -12.56354 -12.55126 -12.42797 -12.15885 -11.97132 -11.76037 -11.69714 -11.37756 -11.04913 -10.87107 -10.55373 -10.17135 -8.19564 -6.29885 1.39083 1.40296 1.51227 2.40378 2.92369 3.13548 3.79872 3.97374 4.08978 4.19340 4.27228 4.36711 4.47297 4.57417 4.64621 4.75367 4.87251 4.95625 5.02967 5.13863 5.16282 5.23492 5.30206 5.35553 5.38603 5.49722 5.51638 5.75844 5.84894 6.25441 6.38110 6.86055 7.38874 8.92498 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.068770 B = 0.007683 C = 0.007161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.058563 B = 3643.632470 C = 3909.287164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C 0.093 3.907 4 H 0.061 0.939 5 C -0.140 4.140 6 C -0.079 4.079 7 H 0.056 0.944 8 C 0.034 3.966 9 C -0.532 4.532 10 H 0.062 0.938 11 C -0.003 4.003 12 N -0.936 5.936 13 Si 0.963 3.037 14 H -0.273 1.273 15 H -0.262 1.262 16 H -0.284 1.284 17 C -0.135 4.135 18 C 0.067 3.933 19 O -0.392 6.392 20 H 0.051 0.949 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.087 0.913 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.053 0.947 27 H -0.013 1.013 28 H -0.014 1.014 29 H 0.262 0.738 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.835 -2.999 0.500 14.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C 0.035 3.965 4 H 0.079 0.921 5 C -0.178 4.178 6 C -0.097 4.097 7 H 0.075 0.925 8 C -0.004 4.004 9 C -0.570 4.570 10 H 0.081 0.919 11 C -0.200 4.200 12 N -0.577 5.577 13 Si 0.788 3.212 14 H -0.198 1.198 15 H -0.186 1.186 16 H -0.210 1.210 17 C -0.173 4.173 18 C -0.010 4.010 19 O -0.312 6.312 20 H 0.070 0.930 21 H 0.076 0.924 22 H 0.086 0.914 23 H 0.105 0.895 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.006 0.994 28 H 0.004 0.996 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.768 -3.134 0.649 14.136 hybrid contribution 1.269 0.870 -0.228 1.555 sum -12.499 -2.264 0.422 12.710 Atomic orbital electron populations 1.21677 0.94264 1.02177 1.01952 1.21576 0.97401 0.93260 1.03005 1.22222 0.92561 0.94898 0.86815 0.92131 1.22258 0.96649 0.96984 1.01891 1.21126 0.96194 0.95193 0.97218 0.92540 1.19011 0.91457 0.95605 0.94277 1.21653 0.92034 0.93557 1.49742 0.91938 1.25993 0.97415 1.01658 0.94966 1.70111 1.02280 1.33295 1.52018 0.85471 0.77672 0.79576 0.78491 1.19817 1.18579 1.20954 1.22069 0.96515 1.01372 0.97344 1.22648 0.92919 0.82636 1.02766 1.87827 1.78438 1.25457 1.39441 0.93010 0.92425 0.91403 0.89481 0.91831 0.91230 0.92858 0.99438 0.99582 0.92895 0.93398 0.91489 0.87413 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.81 71.98 0.71 -2.16 16 2 C -0.12 -2.73 5.64 30.59 0.17 -2.56 16 3 C 0.09 2.72 2.64 30.62 0.08 2.80 16 4 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 5 C -0.14 -4.98 4.71 30.68 0.14 -4.84 16 6 C -0.08 -3.30 2.23 -10.67 -0.02 -3.32 16 7 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 8 C 0.03 1.80 4.46 29.85 0.13 1.94 16 9 C -0.53 -30.30 8.45 25.60 0.22 -30.09 16 10 H 0.06 3.39 7.06 -2.91 -0.02 3.37 16 11 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 12 N -0.94 -57.90 13.29 21.45 0.28 -57.61 16 13 Si 0.96 44.53 29.54 68.60 2.03 46.55 16 14 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 15 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 17 C -0.14 -5.14 5.18 30.68 0.16 -4.98 16 18 C 0.07 2.00 6.84 72.01 0.49 2.50 16 19 O -0.39 -12.36 9.94 -148.98 -1.48 -13.84 16 20 H 0.05 1.13 7.82 -2.39 -0.02 1.11 16 21 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 23 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 24 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 28 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 29 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 30 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 2.66 7.06 -2.38 -0.02 2.64 16 32 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -64.23 265.60 4.42 -59.82 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 1.04 Total: 5.52 kcal Atomic # 6 Polarization: -42.98 SS G_CDS: 2.54 Total: -40.43 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: 0.28 Total: -57.61 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -1.48 Total: -13.84 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -64.23 4.42 -59.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107403492.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.182 kcal (2) G-P(sol) polarization free energy of solvation -64.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds