Wall clock time and date at job start Mon Mar 30 2020 02:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46881 * 2 1 4 4 H 1.08998 * 109.48296 * 55.01945 * 3 2 1 5 5 C 1.53095 * 109.48784 * 175.05338 * 3 2 1 6 6 C 1.53174 * 109.16381 * 62.37856 * 5 3 2 7 7 H 1.09002 * 109.54391 * 297.11467 * 6 5 3 8 8 C 1.53003 * 109.61696 * 176.89131 * 6 5 3 9 9 C 1.50699 * 109.47346 * 175.22150 * 8 6 5 10 10 H 1.07995 * 119.99951 * 0.02562 * 9 8 6 11 11 C 1.37874 * 119.99767 * 180.02562 * 9 8 6 12 12 N 1.31517 * 119.99527 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 120.00350 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.47368 * 90.00059 * 13 11 9 15 15 H 1.48503 * 109.47336 * 210.00323 * 13 11 9 16 16 H 1.48501 * 109.47062 * 329.99683 * 13 11 9 17 17 C 1.53179 * 109.03941 * 56.98191 * 6 5 3 18 18 C 1.53093 * 109.16184 * 303.02234 * 17 6 5 19 19 O 1.42902 * 109.41910 * 57.60502 * 18 17 6 20 20 H 1.09007 * 109.47757 * 60.00286 * 1 2 3 21 21 H 1.08998 * 109.47429 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47796 * 300.00000 * 1 2 3 23 23 H 1.09000 * 109.47125 * 240.00308 * 2 1 3 24 24 H 1.09001 * 109.46995 * 120.00115 * 2 1 3 25 25 H 1.09004 * 109.52063 * 302.47125 * 5 3 2 26 26 H 1.08999 * 109.51965 * 182.28888 * 5 3 2 27 27 H 1.08999 * 109.47206 * 295.22512 * 8 6 5 28 28 H 1.09001 * 109.46515 * 55.22145 * 8 6 5 29 29 H 0.97005 * 120.00082 * 179.97438 * 12 11 9 30 30 H 1.09003 * 109.52104 * 62.92164 * 17 6 5 31 31 H 1.08993 * 109.52693 * 183.11414 * 17 6 5 32 32 H 1.08997 * 109.47995 * 177.59278 * 18 17 6 33 33 H 1.09005 * 109.47463 * 297.62483 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6057 1.9816 0.8419 5 6 3.5658 1.4448 0.1244 6 6 4.1706 0.7382 -1.0926 7 1 3.8497 -0.3034 -1.1062 8 6 5.6975 0.8024 -1.0176 9 6 6.2901 0.0069 -2.1520 10 1 5.6425 -0.4941 -2.8563 11 6 7.6590 -0.0814 -2.2907 12 7 8.1761 -0.7753 -3.2811 13 14 8.7791 0.7856 -1.0730 14 1 9.0839 -0.1285 0.0568 15 1 10.0422 1.1728 -1.7511 16 1 8.1016 2.0020 -0.5566 17 6 3.6903 1.4391 -2.3671 18 6 2.1597 1.4370 -2.3953 19 8 1.6620 2.0816 -1.2211 20 1 -0.3635 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3635 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.8579 0.9189 1.0335 26 1 3.9263 2.4726 0.1654 27 1 6.0216 1.8403 -1.0934 28 1 6.0323 0.3856 -0.0677 29 1 9.1392 -0.8372 -3.3789 30 1 4.0534 2.4668 -2.3765 31 1 4.0714 0.9091 -3.2400 32 1 1.8117 1.9721 -3.2789 33 1 1.7981 0.4092 -2.4267 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107403494.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:39 Heat of formation + Delta-G solvation = -77.094686 kcal Electronic energy + Delta-G solvation = -13243.930992 eV Core-core repulsion = 11075.519858 eV Total energy + Delta-G solvation = -2168.411134 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.50772 -34.68667 -33.20314 -32.17849 -29.82135 -28.49799 -24.55385 -23.02005 -22.45071 -20.46009 -18.58502 -16.80428 -16.02994 -15.50110 -14.71378 -14.31631 -13.79695 -13.42360 -13.29662 -12.70730 -12.56119 -12.11097 -11.89484 -11.49399 -11.28948 -10.95779 -10.72545 -10.63152 -10.55364 -10.30515 -9.80358 -9.70429 -9.40048 -9.02450 -8.77249 -8.52474 -6.03496 -4.00636 3.30764 3.38453 3.42685 4.21045 4.46125 4.98860 5.19777 5.23480 5.29096 5.41713 5.52870 5.64632 5.71335 5.75200 5.87228 5.97104 6.00661 6.07848 6.23108 6.32540 6.44837 6.46218 6.58739 6.81306 6.93235 6.99351 7.26105 7.47274 7.61052 7.81396 8.55208 9.01234 9.59718 11.09882 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.055823 B = 0.008859 C = 0.008560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.465197 B = 3159.993156 C = 3270.312714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.159 4.159 3 C 0.092 3.908 4 H 0.091 0.909 5 C -0.148 4.148 6 C -0.074 4.074 7 H 0.064 0.936 8 C -0.009 4.009 9 C -0.515 4.515 10 H 0.073 0.927 11 C 0.065 3.935 12 N -0.905 5.905 13 Si 0.878 3.122 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.266 1.266 17 C -0.139 4.139 18 C 0.055 3.945 19 O -0.382 6.382 20 H 0.057 0.943 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.015 0.985 28 H 0.010 0.990 29 H 0.262 0.738 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.969 3.457 6.037 13.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.197 4.197 3 C 0.034 3.966 4 H 0.109 0.891 5 C -0.186 4.186 6 C -0.092 4.092 7 H 0.082 0.918 8 C -0.046 4.046 9 C -0.553 4.553 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.544 5.544 13 Si 0.706 3.294 14 H -0.204 1.204 15 H -0.215 1.215 16 H -0.191 1.191 17 C -0.177 4.177 18 C -0.021 4.021 19 O -0.302 6.302 20 H 0.076 0.924 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.029 0.971 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.912 3.570 5.948 13.784 hybrid contribution 1.021 0.088 0.573 1.174 sum -10.890 3.659 6.520 13.210 Atomic orbital electron populations 1.21699 0.95750 1.00995 1.01897 1.22194 0.96247 0.97965 1.03277 1.22175 0.94552 0.92648 0.87178 0.89079 1.22327 0.94782 1.01632 0.99823 1.21068 0.97726 0.98120 0.92292 0.91778 1.19618 0.91017 0.96940 0.97040 1.21144 0.91999 1.30865 1.11303 0.90940 1.25031 0.98263 0.94966 0.95310 1.69917 1.11933 1.41474 1.31103 0.86800 0.80229 0.80774 0.81606 1.20401 1.21451 1.19055 1.22132 0.93906 1.01539 1.00107 1.22674 0.94862 0.97227 0.87378 1.87888 1.74813 1.53559 1.13894 0.92374 0.93192 0.93117 0.90691 0.91238 0.91635 0.91685 0.96643 0.97147 0.92817 0.91992 0.89956 0.89795 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.81 37.16 0.36 -1.32 16 2 C -0.16 -2.12 4.74 -26.73 -0.13 -2.25 16 3 C 0.09 1.35 3.29 -26.68 -0.09 1.26 16 4 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 5 C -0.15 -2.46 4.93 -26.59 -0.13 -2.59 16 6 C -0.07 -1.45 1.91 -90.44 -0.17 -1.62 16 7 H 0.06 1.28 6.73 -51.93 -0.35 0.94 16 8 C -0.01 -0.21 3.53 -27.88 -0.10 -0.31 16 9 C -0.52 -14.53 9.01 -34.44 -0.31 -14.84 16 10 H 0.07 2.18 7.32 -52.49 -0.38 1.79 16 11 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 12 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 13 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 16 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 17 C -0.14 -2.60 5.18 -26.59 -0.14 -2.74 16 18 C 0.05 0.86 6.52 37.21 0.24 1.11 16 19 O -0.38 -6.18 10.13 -35.23 -0.36 -6.54 16 20 H 0.06 0.70 7.82 -51.93 -0.41 0.30 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.07 1.09 4.98 -51.93 -0.26 0.84 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 28 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 29 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.08 1.67 7.07 -51.93 -0.37 1.31 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.05 0.73 6.24 -51.93 -0.32 0.40 16 LS Contribution 255.07 15.07 3.84 3.84 Total: -1.00 -30.06 255.07 -6.37 -36.43 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -5.40 Total: -2.33 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -0.56 Total: -21.50 kcal Atomic # 7 Polarization: -27.94 SS G_CDS: 0.77 Total: -27.17 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.36 Total: -6.54 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.06 -6.37 -36.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107403494.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.668 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds