Wall clock time and date at job start Mon Mar 30 2020 02:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46881 * 2 1 4 4 H 1.08998 * 109.48296 * 55.01945 * 3 2 1 5 5 C 1.53095 * 109.48784 * 175.05338 * 3 2 1 6 6 C 1.53174 * 109.16381 * 62.37856 * 5 3 2 7 7 H 1.09002 * 109.54391 * 297.11467 * 6 5 3 8 8 C 1.53003 * 109.61696 * 176.89131 * 6 5 3 9 9 C 1.50699 * 109.47346 * 175.22150 * 8 6 5 10 10 H 1.07995 * 119.99951 * 0.02562 * 9 8 6 11 11 C 1.37874 * 119.99767 * 180.02562 * 9 8 6 12 12 N 1.31517 * 119.99527 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 120.00350 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.47368 * 90.00059 * 13 11 9 15 15 H 1.48503 * 109.47336 * 210.00323 * 13 11 9 16 16 H 1.48501 * 109.47062 * 329.99683 * 13 11 9 17 17 C 1.53179 * 109.03941 * 56.98191 * 6 5 3 18 18 C 1.53093 * 109.16184 * 303.02234 * 17 6 5 19 19 O 1.42902 * 109.41910 * 57.60502 * 18 17 6 20 20 H 1.09007 * 109.47757 * 60.00286 * 1 2 3 21 21 H 1.08998 * 109.47429 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47796 * 300.00000 * 1 2 3 23 23 H 1.09000 * 109.47125 * 240.00308 * 2 1 3 24 24 H 1.09001 * 109.46995 * 120.00115 * 2 1 3 25 25 H 1.09004 * 109.52063 * 302.47125 * 5 3 2 26 26 H 1.08999 * 109.51965 * 182.28888 * 5 3 2 27 27 H 1.08999 * 109.47206 * 295.22512 * 8 6 5 28 28 H 1.09001 * 109.46515 * 55.22145 * 8 6 5 29 29 H 0.97005 * 120.00082 * 179.97438 * 12 11 9 30 30 H 1.09003 * 109.52104 * 62.92164 * 17 6 5 31 31 H 1.08993 * 109.52693 * 183.11414 * 17 6 5 32 32 H 1.08997 * 109.47995 * 177.59278 * 18 17 6 33 33 H 1.09005 * 109.47463 * 297.62483 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6057 1.9816 0.8419 5 6 3.5658 1.4448 0.1244 6 6 4.1706 0.7382 -1.0926 7 1 3.8497 -0.3034 -1.1062 8 6 5.6975 0.8024 -1.0176 9 6 6.2901 0.0069 -2.1520 10 1 5.6425 -0.4941 -2.8563 11 6 7.6590 -0.0814 -2.2907 12 7 8.1761 -0.7753 -3.2811 13 14 8.7791 0.7856 -1.0730 14 1 9.0839 -0.1285 0.0568 15 1 10.0422 1.1728 -1.7511 16 1 8.1016 2.0020 -0.5566 17 6 3.6903 1.4391 -2.3671 18 6 2.1597 1.4370 -2.3953 19 8 1.6620 2.0816 -1.2211 20 1 -0.3635 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3635 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.8579 0.9189 1.0335 26 1 3.9263 2.4726 0.1654 27 1 6.0216 1.8403 -1.0934 28 1 6.0323 0.3856 -0.0677 29 1 9.1392 -0.8372 -3.3789 30 1 4.0534 2.4668 -2.3765 31 1 4.0714 0.9091 -3.2400 32 1 1.8117 1.9721 -3.2789 33 1 1.7981 0.4092 -2.4267 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107403494.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:38 Heat of formation + Delta-G solvation = -95.612273 kcal Electronic energy + Delta-G solvation = -13244.733975 eV Core-core repulsion = 11075.519858 eV Total energy + Delta-G solvation = -2169.214117 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.81072 -36.37322 -34.39395 -34.16894 -31.06567 -30.32414 -26.12988 -24.37205 -23.84300 -22.10349 -19.95129 -18.92801 -17.33313 -16.79897 -16.40325 -15.84923 -15.30627 -14.88224 -14.68293 -14.41856 -13.95055 -13.65333 -13.33908 -13.01028 -12.60772 -12.47422 -12.28591 -12.12925 -11.90782 -11.76519 -11.70477 -11.39457 -11.04346 -10.74755 -10.70668 -10.16725 -8.28604 -6.30957 1.33452 1.35596 1.47297 2.35491 3.01027 3.06687 3.84634 3.99061 4.01355 4.12087 4.23675 4.34164 4.50593 4.55990 4.63613 4.77117 4.85752 4.95104 4.99416 5.07810 5.15825 5.16136 5.19583 5.32526 5.40896 5.46076 5.47103 5.68592 5.71424 6.30478 6.37673 6.76153 7.32972 8.87990 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.055823 B = 0.008859 C = 0.008560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.465197 B = 3159.993156 C = 3270.312714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.159 4.159 3 C 0.092 3.908 4 H 0.117 0.883 5 C -0.143 4.143 6 C -0.073 4.073 7 H 0.056 0.944 8 C -0.006 4.006 9 C -0.520 4.520 10 H 0.036 0.964 11 C 0.002 3.998 12 N -0.952 5.952 13 Si 0.947 3.053 14 H -0.267 1.267 15 H -0.285 1.285 16 H -0.250 1.250 17 C -0.137 4.137 18 C 0.064 3.936 19 O -0.388 6.388 20 H 0.050 0.950 21 H 0.059 0.941 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.013 0.987 28 H 0.016 0.984 29 H 0.265 0.735 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.102 0.898 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.959 4.476 8.041 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.196 4.196 3 C 0.034 3.966 4 H 0.134 0.866 5 C -0.180 4.180 6 C -0.091 4.091 7 H 0.075 0.925 8 C -0.044 4.044 9 C -0.558 4.558 10 H 0.054 0.946 11 C -0.194 4.194 12 N -0.594 5.594 13 Si 0.771 3.229 14 H -0.192 1.192 15 H -0.211 1.211 16 H -0.174 1.174 17 C -0.175 4.175 18 C -0.013 4.013 19 O -0.307 6.307 20 H 0.069 0.931 21 H 0.078 0.922 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.031 0.969 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.924 4.594 7.961 15.859 hybrid contribution 1.301 -0.282 -0.109 1.336 sum -11.623 4.312 7.852 14.674 Atomic orbital electron populations 1.21663 0.94178 1.01820 1.02233 1.22181 0.97615 0.96922 1.02905 1.22332 0.93078 0.93815 0.87339 0.86558 1.22283 0.96253 1.01059 0.98452 1.20992 0.95114 0.98458 0.94550 0.92546 1.19583 0.93872 0.95681 0.95246 1.21461 0.91909 1.30635 1.11819 0.94578 1.25985 1.00151 0.95898 0.97370 1.70069 1.12461 1.43462 1.33370 0.85706 0.77935 0.80140 0.79160 1.19190 1.21091 1.17386 1.22064 0.96451 1.00396 0.98594 1.22600 0.92276 0.98128 0.88286 1.87890 1.74570 1.53959 1.14268 0.93086 0.92207 0.91697 0.92504 0.90235 0.90270 0.91871 0.96851 0.96589 0.92651 0.92668 0.92749 0.87961 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.81 71.98 0.71 -2.14 16 2 C -0.16 -3.83 4.74 30.59 0.15 -3.69 16 3 C 0.09 2.42 3.29 30.63 0.10 2.52 16 4 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 5 C -0.14 -4.41 4.93 30.68 0.15 -4.26 16 6 C -0.07 -2.83 1.91 -10.67 -0.02 -2.85 16 7 H 0.06 2.27 6.73 -2.39 -0.02 2.25 16 8 C -0.01 -0.31 3.53 29.85 0.11 -0.20 16 9 C -0.52 -30.04 9.01 25.60 0.23 -29.81 16 10 H 0.04 2.28 7.32 -2.91 -0.02 2.26 16 11 C 0.00 0.13 5.47 84.65 0.46 0.60 16 12 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 13 Si 0.95 44.99 27.47 68.60 1.88 46.88 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 15 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 16 H -0.25 -11.16 6.54 99.48 0.65 -10.50 16 17 C -0.14 -5.15 5.18 30.69 0.16 -4.99 16 18 C 0.06 1.92 6.52 72.01 0.47 2.39 16 19 O -0.39 -11.58 10.13 -148.98 -1.51 -13.09 16 20 H 0.05 1.10 7.82 -2.38 -0.02 1.08 16 21 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.06 1.58 4.98 -2.39 -0.01 1.57 16 24 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 28 H 0.02 0.73 7.57 -2.39 -0.02 0.71 16 29 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.05 2.31 7.07 -2.39 -0.02 2.29 16 32 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.06 1.60 6.24 -2.38 -0.01 1.58 16 Total: -1.00 -64.76 255.07 4.19 -60.57 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.00 Total: 8.09 kcal Atomic # 6 Polarization: -44.95 SS G_CDS: 2.51 Total: -42.44 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 0.30 Total: -60.01 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -1.51 Total: -13.09 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.88 kcal Total: -64.76 4.19 -60.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107403494.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.043 kcal (2) G-P(sol) polarization free energy of solvation -64.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds