Wall clock time and date at job start Mon Mar 30 2020 02:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.46846 * 2 1 4 4 H 1.08998 * 109.48591 * 305.02370 * 3 2 1 5 5 C 1.53098 * 109.48162 * 184.99885 * 3 2 1 6 6 C 1.53176 * 109.16306 * 297.62914 * 5 3 2 7 7 H 1.09001 * 109.54676 * 62.97472 * 6 5 3 8 8 C 1.53001 * 109.54407 * 183.14952 * 6 5 3 9 9 C 1.50694 * 109.47168 * 184.99931 * 8 6 5 10 10 H 1.08000 * 120.00563 * 0.02562 * 9 8 6 11 11 C 1.37885 * 119.99902 * 180.02562 * 9 8 6 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46985 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47276 * 299.99832 * 13 11 9 16 16 H 1.48498 * 109.47150 * 60.00043 * 13 11 9 17 17 C 1.53180 * 109.03654 * 303.01815 * 6 5 3 18 18 C 1.53085 * 109.16433 * 56.97856 * 17 6 5 19 19 O 1.42903 * 109.41853 * 302.39345 * 18 17 6 20 20 H 1.09002 * 109.47421 * 299.99591 * 1 2 3 21 21 H 1.09002 * 109.47237 * 60.00158 * 1 2 3 22 22 H 1.09003 * 109.47059 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47421 * 240.00409 * 2 1 3 24 24 H 1.09002 * 109.47237 * 119.99842 * 2 1 3 25 25 H 1.09001 * 109.52352 * 177.71931 * 5 3 2 26 26 H 1.09003 * 109.51976 * 57.53088 * 5 3 2 27 27 H 1.09007 * 109.46922 * 64.99633 * 8 6 5 28 28 H 1.09003 * 109.46836 * 305.00388 * 8 6 5 29 29 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 30 30 H 1.08994 * 109.52229 * 176.89153 * 17 6 5 31 31 H 1.09001 * 109.52053 * 297.07732 * 17 6 5 32 32 H 1.09000 * 109.48059 * 182.41111 * 18 17 6 33 33 H 1.09004 * 109.48795 * 62.37995 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6050 1.9819 -0.8415 5 6 3.5657 1.4447 -0.1258 6 6 4.1715 0.7375 1.0904 7 1 3.8517 -0.3045 1.1031 8 6 5.6981 0.8034 1.0130 9 6 6.2934 0.0033 2.1428 10 1 5.6475 -0.5021 2.8455 11 6 7.6627 -0.0836 2.2793 12 7 8.4492 0.5315 1.4233 13 14 8.4005 -1.0748 3.6801 14 1 9.8823 -1.0109 3.6049 15 1 7.9456 -0.5132 4.9773 16 1 7.9604 -2.4889 3.5714 17 6 3.6923 1.4379 2.3657 18 6 2.1617 1.4361 2.3952 19 8 1.6631 2.0812 1.2216 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.9264 2.4725 -0.1666 26 1 3.8569 0.9191 -1.0352 27 1 6.0214 1.8414 1.0930 28 1 6.0317 0.3914 0.0606 29 1 9.4125 0.4707 1.5196 30 1 4.0742 0.9076 3.2380 31 1 4.0555 2.4656 2.3752 32 1 1.8146 1.9709 3.2793 33 1 1.7998 0.4084 2.4266 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107403496.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:40 Heat of formation + Delta-G solvation = -80.601019 kcal Electronic energy + Delta-G solvation = -13210.572805 eV Core-core repulsion = 11042.009624 eV Total energy + Delta-G solvation = -2168.563180 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.43233 -34.57013 -33.15905 -32.17145 -29.76254 -27.92559 -24.53183 -22.93665 -22.55520 -20.62686 -18.50071 -16.34391 -16.00598 -15.44749 -14.63906 -14.39086 -13.83896 -13.38113 -13.28828 -12.51940 -12.24052 -11.95233 -11.85401 -11.27861 -11.12746 -10.90420 -10.75711 -10.65337 -10.53549 -10.25199 -10.01348 -9.59996 -9.34157 -8.95095 -8.61673 -8.33333 -5.98394 -4.00258 3.32919 3.37663 3.39668 4.26167 4.46363 5.04327 5.24446 5.30013 5.36431 5.47424 5.61003 5.70339 5.79452 5.80275 5.91135 6.05048 6.07388 6.11554 6.26892 6.41203 6.51993 6.54640 6.69944 6.95058 7.07756 7.16464 7.65658 7.68619 7.84490 8.01748 8.44686 9.06020 9.63219 11.12950 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.056178 B = 0.008356 C = 0.008156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.293493 B = 3350.167283 C = 3432.140761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.159 4.159 3 C 0.091 3.909 4 H 0.091 0.909 5 C -0.145 4.145 6 C -0.082 4.082 7 H 0.058 0.942 8 C 0.028 3.972 9 C -0.516 4.516 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.890 3.110 14 H -0.288 1.288 15 H -0.277 1.277 16 H -0.278 1.278 17 C -0.138 4.138 18 C 0.055 3.945 19 O -0.383 6.383 20 H 0.057 0.943 21 H 0.050 0.950 22 H 0.048 0.952 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.016 0.984 28 H 0.015 0.985 29 H 0.260 0.740 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.381 0.149 -1.399 12.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C 0.034 3.966 4 H 0.109 0.891 5 C -0.183 4.183 6 C -0.100 4.100 7 H 0.076 0.924 8 C -0.009 4.009 9 C -0.555 4.555 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.718 3.282 14 H -0.213 1.213 15 H -0.203 1.203 16 H -0.203 1.203 17 C -0.176 4.176 18 C -0.021 4.021 19 O -0.302 6.302 20 H 0.076 0.924 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.303 0.346 -1.435 12.391 hybrid contribution 0.808 -0.812 0.740 1.364 sum -11.495 -0.465 -0.695 11.525 Atomic orbital electron populations 1.21701 0.95842 1.00909 1.01884 1.22187 0.96123 0.98084 1.03212 1.22199 0.94879 0.92509 0.87036 0.89135 1.22293 0.94307 1.01741 0.99936 1.21251 0.99331 0.97469 0.91965 0.92378 1.19121 0.87704 0.97135 0.96920 1.21212 0.91300 1.30874 1.12081 0.92744 1.25024 0.97428 0.95821 0.96204 1.69957 1.03832 1.43440 1.36343 0.86700 0.78019 0.80684 0.82843 1.21317 1.20280 1.20320 1.22125 0.93710 1.01653 1.00092 1.22666 0.95015 0.97048 0.87418 1.87881 1.74800 1.53578 1.13911 0.92426 0.93099 0.93267 0.91237 0.90804 0.91666 0.91666 0.96608 0.96700 0.93001 0.90513 0.91932 0.89984 0.93529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.81 37.15 0.36 -1.36 16 2 C -0.16 -2.18 4.74 -26.73 -0.13 -2.31 16 3 C 0.09 1.40 3.29 -26.68 -0.09 1.31 16 4 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 5 C -0.15 -2.57 4.93 -26.59 -0.13 -2.70 16 6 C -0.08 -1.68 1.91 -90.44 -0.17 -1.85 16 7 H 0.06 1.19 6.74 -51.93 -0.35 0.84 16 8 C 0.03 0.73 4.45 -27.89 -0.12 0.60 16 9 C -0.52 -14.46 8.46 -34.44 -0.29 -14.75 16 10 H 0.05 1.47 7.09 -52.49 -0.37 1.10 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 13 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 C -0.14 -2.63 5.18 -26.59 -0.14 -2.77 16 18 C 0.05 0.88 6.51 37.20 0.24 1.12 16 19 O -0.38 -6.37 10.13 -35.23 -0.36 -6.73 16 20 H 0.06 0.71 7.83 -51.93 -0.41 0.30 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.07 1.10 4.98 -51.93 -0.26 0.84 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.08 1.53 7.09 -51.93 -0.37 1.16 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.70 6.23 -51.93 -0.32 0.38 16 LS Contribution 258.71 15.07 3.90 3.90 Total: -1.00 -29.71 258.71 -6.75 -36.45 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -5.44 Total: -2.74 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -0.56 Total: -21.19 kcal Atomic # 7 Polarization: -27.09 SS G_CDS: 0.74 Total: -26.36 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.36 Total: -6.73 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.71 -6.75 -36.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107403496.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.149 kcal (2) G-P(sol) polarization free energy of solvation -29.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds