Wall clock time and date at job start Mon Mar 30 2020 02:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.48344 * 54.99946 * 3 2 1 5 5 C 1.53091 * 109.47703 * 175.02229 * 3 2 1 6 6 C 1.53176 * 109.16216 * 177.58659 * 5 3 2 7 7 H 1.09006 * 109.54222 * 62.88941 * 6 5 3 8 8 C 1.53005 * 109.54617 * 183.06455 * 6 5 3 9 9 C 1.50701 * 109.47377 * 185.00375 * 8 6 5 10 10 H 1.08006 * 119.99965 * 359.97438 * 9 8 6 11 11 C 1.37876 * 120.00181 * 179.97438 * 9 8 6 12 12 N 1.31513 * 119.99831 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99896 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47086 * 60.00773 * 13 11 9 15 15 H 1.48498 * 109.47048 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47562 * 300.00545 * 13 11 9 17 17 C 1.53176 * 109.03969 * 303.02174 * 6 5 3 18 18 C 1.53090 * 109.16514 * 56.97921 * 17 6 5 19 19 O 1.42901 * 109.47795 * 294.97258 * 3 2 1 20 20 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 22 22 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 23 23 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 24 24 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 25 25 H 1.08995 * 109.52639 * 297.49431 * 5 3 2 26 26 H 1.09007 * 109.52349 * 57.62518 * 5 3 2 27 27 H 1.09006 * 109.46625 * 305.00275 * 8 6 5 28 28 H 1.08992 * 109.47260 * 65.00154 * 8 6 5 29 29 H 0.97000 * 120.00288 * 179.97438 * 12 11 9 30 30 H 1.09006 * 109.52746 * 176.88554 * 17 6 5 31 31 H 1.09001 * 109.52325 * 297.07101 * 17 6 5 32 32 H 1.09000 * 109.48003 * 62.37153 * 18 17 6 33 33 H 1.08997 * 109.48459 * 182.39606 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9817 0.8417 5 6 3.5657 1.4445 0.1252 6 6 4.0734 2.8884 0.0638 7 1 3.6795 3.4497 0.9112 8 6 5.6027 2.8958 0.1114 9 6 6.0965 4.3182 0.1749 10 1 5.3901 5.1353 0.1803 11 6 7.4498 4.5765 0.2261 12 7 8.3099 3.5816 0.2190 13 14 8.0618 6.3397 0.3041 14 1 7.5250 6.9965 1.5229 15 1 9.5460 6.3468 0.3504 16 1 7.6010 7.0774 -0.8995 17 6 3.5965 3.5306 -1.2424 18 6 2.0695 3.4481 -1.3149 19 8 1.6625 2.0813 -1.2213 20 1 -0.3635 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.8538 0.9973 1.0766 26 1 3.9992 0.8700 -0.6935 27 1 5.9413 2.3539 0.9946 28 1 5.9964 2.4142 -0.7835 29 1 9.2620 3.7633 0.2547 30 1 3.9064 4.5753 -1.2692 31 1 4.0306 2.9992 -2.0894 32 1 1.6354 4.0137 -0.4904 33 1 1.7274 3.8654 -2.2619 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107403498.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:41 Heat of formation + Delta-G solvation = -84.514353 kcal Electronic energy + Delta-G solvation = -13004.876300 eV Core-core repulsion = 10836.143424 eV Total energy + Delta-G solvation = -2168.732875 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.09201 -34.64374 -33.67697 -32.20248 -29.41417 -27.95568 -24.63318 -23.02923 -22.11625 -20.45746 -19.07635 -16.33761 -16.00233 -15.45295 -14.45883 -14.26338 -13.93036 -13.49114 -13.27958 -12.86776 -12.18296 -11.90544 -11.57650 -11.26457 -11.11106 -10.92019 -10.76733 -10.66906 -10.59475 -10.25624 -10.02827 -9.59323 -9.51554 -8.99260 -8.62183 -8.33474 -5.98385 -4.00368 3.33179 3.37868 3.39926 4.15627 4.46305 5.01173 5.22215 5.35869 5.36623 5.49837 5.59311 5.68654 5.75572 5.79631 5.89671 6.02425 6.04726 6.12828 6.27586 6.37680 6.47259 6.53346 6.68138 6.94220 7.05612 7.14992 7.66305 7.68308 7.83933 8.01480 8.44427 9.05767 9.63156 11.12947 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.068666 B = 0.007679 C = 0.007160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.670690 B = 3645.633993 C = 3909.589098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.090 3.910 4 H 0.051 0.949 5 C -0.144 4.144 6 C -0.083 4.083 7 H 0.055 0.945 8 C 0.029 3.971 9 C -0.517 4.517 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.890 3.110 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C -0.139 4.139 18 C 0.061 3.939 19 O -0.386 6.386 20 H 0.049 0.951 21 H 0.049 0.951 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.015 0.985 28 H 0.016 0.984 29 H 0.260 0.740 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.210 -3.791 -0.707 12.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.033 3.967 4 H 0.069 0.931 5 C -0.182 4.182 6 C -0.101 4.101 7 H 0.073 0.927 8 C -0.008 4.008 9 C -0.555 4.555 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.718 3.282 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.176 4.176 18 C -0.016 4.016 19 O -0.305 6.305 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.117 -3.928 -0.847 12.766 hybrid contribution 0.719 1.166 0.275 1.398 sum -11.398 -2.762 -0.572 11.741 Atomic orbital electron populations 1.21715 0.95797 1.00964 1.02054 1.21552 0.96107 0.95212 1.02500 1.22136 0.94736 0.93043 0.86796 0.93128 1.22311 0.94460 0.99331 1.02094 1.21251 0.99957 0.92800 0.96105 0.92671 1.19113 0.87627 0.96937 0.97141 1.21212 0.91495 0.92549 1.50247 0.92737 1.25021 0.97099 0.96884 0.95467 1.69954 1.01934 1.30793 1.50889 0.86690 0.77610 0.85309 0.78577 1.20306 1.21321 1.20279 1.22135 0.93787 1.02613 0.99085 1.22636 0.95727 0.82462 1.00773 1.87815 1.78735 1.25183 1.38793 0.93205 0.93178 0.92090 0.91306 0.90908 0.91695 0.91625 0.96660 0.96557 0.92995 0.90429 0.91861 0.94013 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.81 37.16 0.36 -1.32 16 2 C -0.12 -1.51 5.64 -26.73 -0.15 -1.66 16 3 C 0.09 1.41 2.64 -26.68 -0.07 1.34 16 4 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.14 -2.58 4.71 -26.59 -0.13 -2.71 16 6 C -0.08 -1.72 2.22 -90.44 -0.20 -1.92 16 7 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 8 C 0.03 0.75 4.46 -27.88 -0.12 0.62 16 9 C -0.52 -14.52 8.46 -34.44 -0.29 -14.81 16 10 H 0.05 1.48 7.09 -52.48 -0.37 1.11 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 13 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 C -0.14 -2.66 5.19 -26.59 -0.14 -2.79 16 18 C 0.06 0.98 6.84 37.20 0.25 1.23 16 19 O -0.39 -6.49 9.94 -35.23 -0.35 -6.84 16 20 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.74 7.82 -51.93 -0.41 0.34 16 23 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.08 1.55 7.09 -51.93 -0.37 1.18 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 265.67 15.07 4.00 4.00 Total: -1.00 -29.82 265.67 -6.99 -36.81 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -5.78 Total: -3.77 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -0.58 Total: -20.50 kcal Atomic # 7 Polarization: -27.11 SS G_CDS: 0.74 Total: -26.37 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.35 Total: -6.84 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.82 -6.99 -36.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107403498.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.709 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds