Wall clock time and date at job start Mon Mar 30 2020 01:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.49113 * 2 1 4 4 C 1.53095 * 109.48032 * 120.02712 * 2 1 3 5 5 C 1.53178 * 109.16080 * 62.37405 * 4 2 1 6 6 H 1.08994 * 109.54691 * 297.11219 * 5 4 2 7 7 C 1.52999 * 109.61718 * 176.88958 * 5 4 2 8 8 C 1.50705 * 109.47268 * 175.40095 * 7 5 4 9 9 H 1.07996 * 119.99869 * 359.97438 * 8 7 5 10 10 C 1.37876 * 119.99796 * 180.02562 * 8 7 5 11 11 N 1.31516 * 119.99975 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00017 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46994 * 89.99508 * 12 10 8 14 14 H 1.48494 * 109.47471 * 210.00087 * 12 10 8 15 15 H 1.48500 * 109.46839 * 329.99884 * 12 10 8 16 16 C 1.53176 * 109.03609 * 56.98198 * 5 4 2 17 17 C 1.53095 * 109.16286 * 303.01594 * 16 5 4 18 18 O 1.42903 * 109.41530 * 57.61206 * 17 16 5 19 19 H 1.09007 * 109.47355 * 299.97357 * 1 2 3 20 20 H 1.09004 * 109.47449 * 59.96905 * 1 2 3 21 21 H 1.09001 * 109.47154 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47573 * 180.02562 * 3 2 1 23 23 H 1.09004 * 109.47569 * 300.02996 * 3 2 1 24 24 H 1.09009 * 109.47458 * 60.02789 * 3 2 1 25 25 H 1.08998 * 109.52174 * 302.47145 * 4 2 1 26 26 H 1.08997 * 109.57369 * 182.30935 * 4 2 1 27 27 H 1.08999 * 109.47550 * 295.40128 * 7 5 4 28 28 H 1.09005 * 109.47093 * 55.39788 * 7 5 4 29 29 H 0.97002 * 119.99804 * 180.02562 * 11 10 8 30 30 H 1.09001 * 109.52789 * 62.92535 * 16 5 4 31 31 H 1.09007 * 109.52321 * 183.11250 * 16 5 4 32 32 H 1.08997 * 109.47843 * 177.59528 * 17 16 5 33 33 H 1.08997 * 109.48336 * 297.62823 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4423 0.0000 4 6 2.0405 -0.7222 1.2496 5 6 1.5756 -2.1813 1.2122 6 1 0.4867 -2.2179 1.2408 7 6 2.1449 -2.9328 2.4172 8 6 1.5955 -4.3360 2.4395 9 1 0.9087 -4.6592 1.6712 10 6 1.9689 -5.2067 3.4412 11 7 2.8049 -4.8128 4.3770 12 14 1.2874 -6.9457 3.4692 13 1 2.1850 -7.8416 2.6965 14 1 1.2023 -7.4214 4.8733 15 1 -0.0668 -6.9565 2.8600 16 6 2.0764 -2.8322 -0.0808 17 6 1.5645 -2.0284 -1.2790 18 8 2.0065 -0.6742 -1.1664 19 1 -0.3634 0.5134 0.8903 20 1 -0.3634 0.5143 -0.8897 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1304 1.4420 -0.0005 23 1 1.6769 1.9565 -0.8897 24 1 1.6777 1.9562 0.8903 25 1 1.6420 -0.2357 2.1399 26 1 3.1297 -0.6874 1.2721 27 1 3.2317 -2.9694 2.3424 28 1 1.8610 -2.4168 3.3344 29 1 3.0679 -5.4255 5.0815 30 1 3.1664 -2.8400 -0.0864 31 1 1.7036 -3.8547 -0.1420 32 1 1.9530 -2.4622 -2.2004 33 1 0.4749 -2.0549 -1.2958 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107403501.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:39 Heat of formation + Delta-G solvation = -95.390527 kcal Electronic energy + Delta-G solvation = -13298.731931 eV Core-core repulsion = 11129.527429 eV Total energy + Delta-G solvation = -2169.204501 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.89875 -36.35340 -34.50960 -34.12854 -30.17798 -28.60269 -28.15578 -25.35242 -23.99203 -21.51441 -20.03019 -18.51910 -17.02353 -16.78932 -16.43080 -15.81085 -15.30315 -14.98856 -14.23465 -13.94673 -13.88481 -13.28863 -13.07127 -12.91504 -12.81800 -12.57508 -12.52480 -12.43007 -12.05310 -11.92540 -11.74543 -11.40622 -11.00524 -10.72888 -10.54930 -10.13777 -8.19166 -6.29369 1.38866 1.40006 1.50850 2.40342 2.91276 3.13825 3.86618 3.95969 3.99906 4.12217 4.26810 4.43148 4.57949 4.61364 4.71529 4.81117 4.84974 4.93487 4.96204 5.09731 5.13769 5.19218 5.31305 5.35837 5.39467 5.47694 5.52488 5.77394 5.86210 6.26106 6.42288 6.86623 7.39275 8.92823 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.058573 B = 0.008725 C = 0.008237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.917726 B = 3208.459845 C = 3398.675787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.107 3.893 3 C -0.133 4.133 4 C -0.133 4.133 5 C -0.076 4.076 6 H 0.061 0.939 7 C 0.034 3.966 8 C -0.531 4.531 9 H 0.063 0.937 10 C -0.004 4.004 11 N -0.936 5.936 12 Si 0.962 3.038 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.262 1.262 16 C -0.136 4.136 17 C 0.063 3.937 18 O -0.391 6.391 19 H 0.074 0.926 20 H 0.073 0.927 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.049 0.951 27 H -0.016 1.016 28 H -0.013 1.013 29 H 0.262 0.738 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.437 8.474 -9.618 13.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.068 3.932 3 C -0.190 4.190 4 C -0.171 4.171 5 C -0.095 4.095 6 H 0.079 0.921 7 C -0.003 4.003 8 C -0.568 4.568 9 H 0.081 0.919 10 C -0.201 4.201 11 N -0.577 5.577 12 Si 0.787 3.213 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.186 1.186 16 C -0.173 4.173 17 C -0.013 4.013 18 O -0.311 6.311 19 H 0.093 0.907 20 H 0.092 0.908 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.092 0.908 24 H 0.102 0.898 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.002 0.998 28 H 0.005 0.995 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.239 8.517 -9.604 13.518 hybrid contribution -0.027 -1.286 0.836 1.534 sum -4.266 7.231 -8.768 12.139 Atomic orbital electron populations 1.22400 0.94766 1.02607 1.03353 1.21631 0.94006 0.93183 0.84411 1.21752 1.01528 0.92281 1.03400 1.22233 1.00454 0.95913 0.98501 1.21129 0.99269 0.93816 0.95264 0.92074 1.19012 0.94231 0.94413 0.92675 1.21645 1.26888 0.98106 1.10208 0.91928 1.25990 0.95533 1.03300 0.95254 1.70112 1.35354 1.37404 1.14791 0.85483 0.79171 0.79290 0.77344 1.19901 1.20912 1.18583 1.22072 1.00247 0.99930 0.95095 1.22661 0.99105 0.81510 0.98016 1.87865 1.74540 1.25147 1.43522 0.90671 0.90767 0.92641 0.92561 0.90850 0.89770 0.91333 0.93173 0.99777 0.99471 0.92926 0.93596 0.91493 0.87642 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.42 7.93 71.98 0.57 -3.84 16 2 C 0.11 3.12 1.11 -10.77 -0.01 3.11 16 3 C -0.13 -3.11 8.85 71.98 0.64 -2.47 16 4 C -0.13 -4.76 4.21 30.69 0.13 -4.64 16 5 C -0.08 -3.19 1.91 -10.68 -0.02 -3.21 16 6 H 0.06 2.51 6.62 -2.39 -0.02 2.50 16 7 C 0.03 1.81 4.46 29.85 0.13 1.95 16 8 C -0.53 -30.19 8.45 25.60 0.22 -29.98 16 9 H 0.06 3.39 7.06 -2.91 -0.02 3.37 16 10 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 11 N -0.94 -57.87 13.29 21.45 0.28 -57.59 16 12 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 13 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 14 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 15 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 16 C -0.14 -5.19 5.18 30.69 0.16 -5.03 16 17 C 0.06 1.93 6.52 72.01 0.47 2.40 16 18 O -0.39 -12.49 10.24 -148.98 -1.53 -14.02 16 19 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 20 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 21 H 0.05 1.53 4.97 -2.39 -0.01 1.52 16 22 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 25 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 28 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 29 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 2.66 7.06 -2.38 -0.02 2.65 16 32 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.06 1.69 6.34 -2.39 -0.02 1.68 16 Total: -1.00 -64.60 258.39 4.59 -60.02 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 1.06 Total: 6.46 kcal Atomic # 6 Polarization: -44.21 SS G_CDS: 2.74 Total: -41.46 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.28 Total: -57.59 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -1.53 Total: -14.02 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -64.60 4.59 -60.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107403501.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.374 kcal (2) G-P(sol) polarization free energy of solvation -64.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds