Wall clock time and date at job start Mon Mar 30 2020 01:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.49279 * 2 1 4 4 C 1.53088 * 109.48291 * 239.96812 * 2 1 3 5 5 C 1.53177 * 109.16500 * 297.62945 * 4 2 1 6 6 H 1.09001 * 109.62013 * 62.92609 * 5 4 2 7 7 C 1.53001 * 109.54687 * 183.15071 * 5 4 2 8 8 C 1.50697 * 109.46995 * 184.55577 * 7 5 4 9 9 H 1.07991 * 120.00449 * 359.72153 * 8 7 5 10 10 C 1.37885 * 119.99686 * 179.97438 * 8 7 5 11 11 N 1.31514 * 120.00035 * 179.72339 * 10 8 7 12 12 Si 1.86803 * 119.99853 * 359.72191 * 10 8 7 13 13 H 1.48500 * 109.46986 * 90.00256 * 12 10 8 14 14 H 1.48496 * 109.47029 * 210.00273 * 12 10 8 15 15 H 1.48499 * 109.47352 * 330.00102 * 12 10 8 16 16 C 1.53179 * 109.03663 * 303.01797 * 5 4 2 17 17 C 1.53098 * 109.16294 * 56.97533 * 16 5 4 18 18 O 1.42904 * 109.41605 * 302.39525 * 17 16 5 19 19 H 1.09005 * 109.47298 * 299.97494 * 1 2 3 20 20 H 1.08998 * 109.47382 * 59.96996 * 1 2 3 21 21 H 1.08998 * 109.47211 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47239 * 180.02562 * 3 2 1 23 23 H 1.09004 * 109.46582 * 300.03229 * 3 2 1 24 24 H 1.08997 * 109.46912 * 60.02329 * 3 2 1 25 25 H 1.08998 * 109.52643 * 177.71934 * 4 2 1 26 26 H 1.09004 * 109.51978 * 57.52784 * 4 2 1 27 27 H 1.08998 * 109.47065 * 64.55003 * 7 5 4 28 28 H 1.09001 * 109.46892 * 304.55267 * 7 5 4 29 29 H 0.97000 * 119.99706 * 179.97438 * 11 10 8 30 30 H 1.08998 * 109.52629 * 176.88617 * 16 5 4 31 31 H 1.09003 * 109.52239 * 297.01229 * 16 5 4 32 32 H 1.09001 * 109.47793 * 62.37838 * 17 16 5 33 33 H 1.08999 * 109.47666 * 182.39714 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 1.5757 -2.1814 -1.2121 6 1 0.4867 -2.2194 -1.2415 7 6 2.1467 -2.9316 -2.4171 8 6 1.5991 -4.3354 -2.4404 9 1 0.9161 -4.6614 -1.6701 10 6 1.9743 -5.2051 -3.4423 11 7 1.5007 -6.4319 -3.4596 12 14 3.1553 -4.6409 -4.7752 13 1 4.5507 -4.9203 -4.3508 14 1 2.8654 -5.3715 -6.0350 15 1 2.9887 -3.1824 -4.9993 16 6 2.0763 -2.8323 0.0810 17 6 1.5645 -2.0284 1.2792 18 8 2.0065 -0.6741 1.1664 19 1 -0.3634 0.5135 0.8902 20 1 -0.3634 0.5143 -0.8897 21 1 -0.3633 -1.0276 -0.0005 22 1 3.1304 1.4419 -0.0005 23 1 1.6768 1.9564 -0.8897 24 1 1.6777 1.9561 0.8902 25 1 3.1297 -0.6875 -1.2709 26 1 1.6420 -0.2358 -2.1398 27 1 3.2335 -2.9666 -2.3416 28 1 1.8627 -2.4156 -3.3342 29 1 1.7644 -7.0436 -4.1647 30 1 1.7036 -3.8547 0.1422 31 1 3.1663 -2.8411 0.0860 32 1 0.4749 -2.0549 1.2959 33 1 1.9528 -2.4623 2.2006 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107403503.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:41 Heat of formation + Delta-G solvation = -73.854898 kcal Electronic energy + Delta-G solvation = -13334.664030 eV Core-core repulsion = 11166.393384 eV Total energy + Delta-G solvation = -2168.270646 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.60794 -34.68030 -33.27394 -32.15575 -28.86452 -27.27786 -27.08119 -23.43668 -22.33377 -19.81114 -18.68062 -16.80351 -15.78545 -15.37609 -14.68461 -14.21311 -13.78280 -13.58167 -12.75253 -12.70774 -12.33933 -12.02251 -11.78742 -11.70885 -11.47507 -11.20515 -10.80231 -10.72669 -10.42186 -10.32811 -9.94523 -9.63985 -9.42725 -9.02673 -8.75293 -8.52532 -6.03334 -4.00422 3.31170 3.38570 3.42529 4.08747 4.46242 5.05588 5.10814 5.27308 5.29694 5.43572 5.65646 5.70335 5.78035 5.83305 5.88179 5.90782 5.95059 6.05993 6.19630 6.35062 6.42422 6.47687 6.61077 6.81264 6.93683 6.99560 7.28327 7.46315 7.65205 7.81599 8.55429 9.01428 9.59871 11.10029 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.052468 B = 0.009520 C = 0.008796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.531287 B = 2940.393855 C = 3182.562684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.110 3.890 3 C -0.135 4.135 4 C -0.139 4.139 5 C -0.074 4.074 6 H 0.065 0.935 7 C -0.008 4.008 8 C -0.515 4.515 9 H 0.073 0.927 10 C 0.065 3.935 11 N -0.905 5.905 12 Si 0.878 3.122 13 H -0.278 1.278 14 H -0.289 1.289 15 H -0.266 1.266 16 C -0.140 4.140 17 C 0.057 3.943 18 O -0.382 6.382 19 H 0.055 0.945 20 H 0.063 0.937 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.011 0.989 28 H 0.015 0.985 29 H 0.262 0.738 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.080 12.474 6.138 13.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.071 3.929 3 C -0.193 4.193 4 C -0.177 4.177 5 C -0.093 4.093 6 H 0.083 0.917 7 C -0.046 4.046 8 C -0.553 4.553 9 H 0.091 0.909 10 C -0.136 4.136 11 N -0.544 5.544 12 Si 0.706 3.294 13 H -0.204 1.204 14 H -0.215 1.215 15 H -0.191 1.191 16 C -0.177 4.177 17 C -0.019 4.019 18 O -0.302 6.302 19 H 0.075 0.925 20 H 0.082 0.918 21 H 0.086 0.914 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.029 0.971 28 H 0.033 0.967 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.201 12.398 6.168 13.849 hybrid contribution 0.457 -0.118 -1.014 1.119 sum 0.659 12.281 5.153 13.334 Atomic orbital electron populations 1.22432 0.96178 1.03012 1.01889 1.21462 0.92880 0.92310 0.86261 1.21742 1.01719 0.93965 1.01831 1.22309 1.01267 0.97360 0.96735 1.21098 0.99911 0.92112 0.96162 0.91711 1.19614 0.95780 0.96156 0.93026 1.21144 1.27918 0.94690 1.11533 0.90934 1.25034 0.96023 0.94763 0.97755 1.69915 1.44991 1.05482 1.34039 0.86798 0.81675 0.79288 0.81643 1.20372 1.21469 1.19074 1.22143 1.01221 1.00338 0.94027 1.22665 0.98415 0.81957 0.98896 1.87865 1.74050 1.25142 1.43111 0.92546 0.91808 0.91380 0.92091 0.91449 0.92362 0.91721 0.91684 0.97101 0.96687 0.92818 0.89924 0.91984 0.93414 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 7.94 37.15 0.29 -2.13 16 2 C 0.11 1.65 1.11 -90.58 -0.10 1.55 16 3 C -0.14 -1.68 8.85 37.16 0.33 -1.35 16 4 C -0.14 -2.35 4.21 -26.59 -0.11 -2.46 16 5 C -0.07 -1.48 1.92 -90.44 -0.17 -1.65 16 6 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 7 C -0.01 -0.20 3.53 -27.88 -0.10 -0.30 16 8 C -0.51 -14.54 9.01 -34.44 -0.31 -14.85 16 9 H 0.07 2.18 7.30 -52.49 -0.38 1.80 16 10 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 11 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 12 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 15 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 16 C -0.14 -2.63 5.18 -26.59 -0.14 -2.77 16 17 C 0.06 0.91 6.52 37.21 0.24 1.15 16 18 O -0.38 -6.34 10.24 -35.23 -0.36 -6.70 16 19 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 20 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.07 1.00 4.98 -51.93 -0.26 0.74 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.01 0.26 7.58 -51.93 -0.39 -0.13 16 28 H 0.01 0.36 7.19 -51.93 -0.37 -0.01 16 29 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.08 1.69 7.05 -51.93 -0.37 1.32 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.73 6.34 -51.93 -0.33 0.40 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 254.78 15.07 3.84 3.84 Total: -1.00 -30.29 254.78 -6.00 -36.29 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.42 Total: -2.51 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -0.16 Total: -21.01 kcal Atomic # 7 Polarization: -27.96 SS G_CDS: 0.77 Total: -27.19 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.36 Total: -6.70 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.29 -6.00 -36.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107403503.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.569 kcal (2) G-P(sol) polarization free energy of solvation -30.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds