Wall clock time and date at job start Mon Mar 30 2020 02:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99953 * 2 1 4 4 H 1.48501 * 109.47134 * 269.99596 * 3 2 1 5 5 H 1.48501 * 109.47317 * 29.99527 * 3 2 1 6 6 H 1.48503 * 109.47265 * 149.99878 * 3 2 1 7 7 C 1.37875 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99833 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99982 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47062 * 174.36084 * 9 7 2 11 11 C 1.46903 * 110.99590 * 161.83379 * 10 9 7 12 12 C 1.53008 * 109.46836 * 189.99914 * 11 10 9 13 13 C 1.53003 * 109.46879 * 179.97438 * 12 11 10 14 14 N 1.46898 * 109.46574 * 180.02562 * 13 12 11 15 15 C 1.46897 * 111.00039 * 285.78841 * 10 9 7 16 16 C 1.52997 * 117.50034 * 137.96017 * 15 10 9 17 17 C 1.52999 * 117.50125 * 69.29756 * 15 10 9 18 18 H 0.97000 * 119.99959 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47326 * 54.36333 * 9 7 2 20 20 H 1.08995 * 109.46813 * 294.36173 * 9 7 2 21 21 H 1.08994 * 109.47262 * 70.00322 * 11 10 9 22 22 H 1.09001 * 109.47040 * 309.99923 * 11 10 9 23 23 H 1.08997 * 109.46935 * 300.00479 * 12 11 10 24 24 H 1.09004 * 109.46673 * 60.00262 * 12 11 10 25 25 H 1.09001 * 109.47091 * 300.00066 * 13 12 11 26 26 H 1.08996 * 109.46685 * 60.00242 * 13 12 11 27 27 H 1.00894 * 111.00769 * 56.04444 * 14 13 12 28 28 H 1.00903 * 110.99571 * 180.02562 * 14 13 12 29 29 H 1.09005 * 115.54791 * 283.62648 * 15 10 9 30 30 H 1.09000 * 117.49441 * 359.97438 * 16 15 10 31 31 H 1.08995 * 117.50263 * 145.01542 * 16 15 10 32 32 H 1.08994 * 117.49727 * 214.97908 * 17 15 10 33 33 H 1.08998 * 117.49758 * 359.97438 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.1999 -3.6124 -0.1349 11 6 1.5875 -4.8800 0.2845 12 6 2.6645 -5.9636 0.3684 13 6 2.0267 -7.2837 0.8060 14 7 3.0609 -8.3238 0.8871 15 6 2.7113 -3.7040 -1.5090 16 6 4.2043 -3.9851 -1.6899 17 6 3.6454 -2.5922 -1.9908 18 1 -0.4850 0.8400 -0.0004 19 1 0.5511 -2.5146 -0.8349 20 1 0.7019 -2.6016 0.9365 21 1 0.8305 -5.1757 -0.4418 22 1 1.1229 -4.7530 1.2624 23 1 3.1291 -6.0904 -0.6093 24 1 3.4215 -5.6678 1.0948 25 1 1.5624 -7.1564 1.7839 26 1 1.2695 -7.5795 0.0799 27 1 3.8074 -8.0442 1.5057 28 1 2.6645 -9.2062 1.1740 29 1 2.0257 -4.1365 -2.2378 30 1 4.8071 -4.1017 -0.7893 31 1 4.5011 -4.6022 -2.5379 32 1 3.5748 -2.2935 -3.0366 33 1 3.8802 -1.7925 -1.2883 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135313576.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:26 Heat of formation + Delta-G solvation = 23.278106 kcal Electronic energy + Delta-G solvation = -12861.564750 eV Core-core repulsion = 10729.798858 eV Total energy + Delta-G solvation = -2131.765892 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.87374 -35.41106 -33.46794 -32.41716 -29.77166 -26.56380 -23.44703 -22.20866 -21.54487 -20.86093 -19.33555 -16.54439 -15.80402 -15.14485 -14.89451 -14.61383 -14.32822 -13.68358 -13.27647 -12.53509 -12.13530 -11.86974 -11.48893 -11.30564 -10.95360 -10.80871 -10.66144 -10.61793 -10.35427 -9.84918 -9.46636 -9.05979 -9.04717 -8.70014 -8.37028 -7.23718 -5.98201 -3.97917 3.33598 3.39858 3.43599 4.41357 4.56191 4.66582 4.88909 5.30621 5.35860 5.42506 5.72021 5.74681 5.80944 5.84260 5.95975 6.18975 6.26193 6.27794 6.42373 6.59555 6.69249 6.77927 7.07241 7.11823 7.27108 7.40084 7.43984 7.90244 8.16218 8.26248 8.59998 9.08560 9.64671 11.12632 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.048165 B = 0.008430 C = 0.007640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.199161 B = 3320.669426 C = 3663.964147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.053 3.947 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.497 4.497 8 H 0.068 0.932 9 C 0.194 3.806 10 N -0.511 5.511 11 C 0.061 3.939 12 C -0.111 4.111 13 C 0.061 3.939 14 N -0.853 5.853 15 C 0.028 3.972 16 C -0.184 4.184 17 C -0.158 4.158 18 H 0.260 0.740 19 H -0.003 1.003 20 H 0.024 0.976 21 H 0.021 0.979 22 H 0.065 0.935 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.024 0.976 26 H 0.067 0.933 27 H 0.340 0.660 28 H 0.336 0.664 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.726 -10.647 -0.009 11.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.536 4.536 8 H 0.086 0.914 9 C 0.070 3.930 10 N -0.236 5.236 11 C -0.068 4.068 12 C -0.149 4.149 13 C -0.071 4.071 14 N -0.382 5.382 15 C -0.081 4.081 16 C -0.222 4.222 17 C -0.195 4.195 18 H 0.069 0.931 19 H 0.015 0.985 20 H 0.042 0.958 21 H 0.039 0.961 22 H 0.084 0.916 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.152 0.848 28 H 0.148 0.852 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.041 -10.282 -0.470 11.461 hybrid contribution -0.718 0.739 0.466 1.131 sum 4.323 -9.543 -0.004 10.476 Atomic orbital electron populations 1.69958 1.06049 1.26603 1.51550 1.24988 0.94829 0.99195 0.95764 0.86560 0.79830 0.83384 0.78040 1.20734 1.21366 1.19796 1.21261 0.93537 0.89701 1.49101 0.91359 1.19715 0.89892 0.87472 0.95946 1.61897 1.39192 1.03163 1.19350 1.21957 0.94758 0.90419 0.99662 1.21552 0.98601 0.92222 1.02529 1.21811 0.93871 0.92180 0.99194 1.58713 1.13905 1.05700 1.59832 1.22023 0.91189 1.03887 0.91049 1.23023 0.96958 1.00185 1.02006 1.23162 1.02554 0.92737 1.01070 0.93055 0.98544 0.95815 0.96113 0.91646 0.91040 0.91841 0.95760 0.91443 0.84837 0.85221 0.91559 0.89076 0.90325 0.90300 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.50 -13.85 7.82 -34.44 -0.27 -14.12 16 8 H 0.07 1.87 5.55 -52.48 -0.29 1.58 16 9 C 0.19 5.11 4.75 -4.98 -0.02 5.09 16 10 N -0.51 -11.20 4.58 -228.08 -1.05 -12.25 16 11 C 0.06 1.13 4.95 -3.82 -0.02 1.11 16 12 C -0.11 -1.70 5.30 -26.73 -0.14 -1.84 16 13 C 0.06 0.77 6.79 -3.82 -0.03 0.75 16 14 N -0.85 -9.49 9.62 -10.37 -0.10 -9.59 16 15 C 0.03 0.56 4.19 -67.72 -0.28 0.28 16 16 C -0.18 -3.17 9.31 -26.69 -0.25 -3.42 16 17 C -0.16 -3.12 9.41 -26.69 -0.25 -3.37 16 18 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 19 H 0.00 -0.10 8.02 -51.93 -0.42 -0.51 16 20 H 0.02 0.66 7.76 -51.93 -0.40 0.26 16 21 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 22 H 0.07 1.20 7.84 -51.93 -0.41 0.80 16 23 H 0.07 1.15 6.61 -51.93 -0.34 0.81 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.34 3.44 8.99 -39.29 -0.35 3.08 16 28 H 0.34 3.01 9.08 -39.29 -0.36 2.65 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.12 2.59 5.32 -51.93 -0.28 2.31 16 LS Contribution 268.92 15.07 4.05 4.05 Total: -1.00 -29.65 268.92 -8.10 -37.75 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.36 Total: 3.72 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -1.36 Total: -14.13 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.41 Total: -48.04 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.65 -8.10 -37.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135313576.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.028 kcal (2) G-P(sol) polarization free energy of solvation -29.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds