Wall clock time and date at job start Mon Mar 30 2020 02:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99953 * 2 1 4 4 H 1.48501 * 109.47134 * 269.99596 * 3 2 1 5 5 H 1.48501 * 109.47317 * 29.99527 * 3 2 1 6 6 H 1.48503 * 109.47265 * 149.99878 * 3 2 1 7 7 C 1.37875 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99833 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99982 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47062 * 174.36084 * 9 7 2 11 11 C 1.46903 * 110.99590 * 161.83379 * 10 9 7 12 12 C 1.53008 * 109.46836 * 189.99914 * 11 10 9 13 13 C 1.53003 * 109.46879 * 179.97438 * 12 11 10 14 14 N 1.46898 * 109.46574 * 180.02562 * 13 12 11 15 15 C 1.46897 * 111.00039 * 285.78841 * 10 9 7 16 16 C 1.52997 * 117.50034 * 137.96017 * 15 10 9 17 17 C 1.52999 * 117.50125 * 69.29756 * 15 10 9 18 18 H 0.97000 * 119.99959 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47326 * 54.36333 * 9 7 2 20 20 H 1.08995 * 109.46813 * 294.36173 * 9 7 2 21 21 H 1.08994 * 109.47262 * 70.00322 * 11 10 9 22 22 H 1.09001 * 109.47040 * 309.99923 * 11 10 9 23 23 H 1.08997 * 109.46935 * 300.00479 * 12 11 10 24 24 H 1.09004 * 109.46673 * 60.00262 * 12 11 10 25 25 H 1.09001 * 109.47091 * 300.00066 * 13 12 11 26 26 H 1.08996 * 109.46685 * 60.00242 * 13 12 11 27 27 H 1.00894 * 111.00769 * 56.04444 * 14 13 12 28 28 H 1.00903 * 110.99571 * 180.02562 * 14 13 12 29 29 H 1.09005 * 115.54791 * 283.62648 * 15 10 9 30 30 H 1.09000 * 117.49441 * 359.97438 * 16 15 10 31 31 H 1.08995 * 117.50263 * 145.01542 * 16 15 10 32 32 H 1.08994 * 117.49727 * 214.97908 * 17 15 10 33 33 H 1.08998 * 117.49758 * 359.97438 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.1999 -3.6124 -0.1349 11 6 1.5875 -4.8800 0.2845 12 6 2.6645 -5.9636 0.3684 13 6 2.0267 -7.2837 0.8060 14 7 3.0609 -8.3238 0.8871 15 6 2.7113 -3.7040 -1.5090 16 6 4.2043 -3.9851 -1.6899 17 6 3.6454 -2.5922 -1.9908 18 1 -0.4850 0.8400 -0.0004 19 1 0.5511 -2.5146 -0.8349 20 1 0.7019 -2.6016 0.9365 21 1 0.8305 -5.1757 -0.4418 22 1 1.1229 -4.7530 1.2624 23 1 3.1291 -6.0904 -0.6093 24 1 3.4215 -5.6678 1.0948 25 1 1.5624 -7.1564 1.7839 26 1 1.2695 -7.5795 0.0799 27 1 3.8074 -8.0442 1.5057 28 1 2.6645 -9.2062 1.1740 29 1 2.0257 -4.1365 -2.2378 30 1 4.8071 -4.1017 -0.7893 31 1 4.5011 -4.6022 -2.5379 32 1 3.5748 -2.2935 -3.0366 33 1 3.8802 -1.7925 -1.2883 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135313576.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:25 Heat of formation + Delta-G solvation = 1.666121 kcal Electronic energy + Delta-G solvation = -12862.501916 eV Core-core repulsion = 10729.798858 eV Total energy + Delta-G solvation = -2132.703058 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.48512 -36.57404 -35.27042 -34.23614 -31.28196 -28.44826 -24.91506 -24.08635 -23.04339 -22.15611 -20.99713 -18.58229 -16.94877 -16.65812 -16.53783 -16.30682 -15.59853 -15.29514 -14.66011 -14.39640 -13.81373 -13.41059 -13.25701 -13.03205 -12.62924 -12.41612 -12.35951 -12.12296 -11.79100 -11.65651 -11.19321 -10.96906 -10.67174 -10.52168 -9.59529 -9.03295 -8.15852 -6.23579 1.41893 1.42771 1.53984 2.41962 3.04916 3.15920 3.23549 3.70298 4.10439 4.20521 4.22794 4.30386 4.48374 4.52427 4.62278 4.73412 4.86313 4.91631 4.94302 5.11263 5.19364 5.30082 5.34442 5.42214 5.50696 5.78923 6.10920 6.23828 6.42195 6.64207 6.67253 6.91758 7.44292 8.95271 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.048165 B = 0.008430 C = 0.007640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.199161 B = 3320.669426 C = 3663.964147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.506 4.506 8 H 0.072 0.928 9 C 0.208 3.792 10 N -0.516 5.516 11 C 0.060 3.940 12 C -0.095 4.095 13 C 0.067 3.933 14 N -0.855 5.855 15 C 0.003 3.997 16 C -0.142 4.142 17 C -0.173 4.173 18 H 0.262 0.738 19 H -0.037 1.037 20 H -0.002 1.002 21 H 0.019 0.981 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.029 0.971 26 H 0.068 0.932 27 H 0.346 0.654 28 H 0.351 0.649 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.447 -11.393 -0.288 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.544 4.544 8 H 0.090 0.910 9 C 0.082 3.918 10 N -0.240 5.240 11 C -0.069 4.069 12 C -0.133 4.133 13 C -0.064 4.064 14 N -0.386 5.386 15 C -0.106 4.106 16 C -0.180 4.180 17 C -0.210 4.210 18 H 0.071 0.929 19 H -0.019 1.019 20 H 0.016 0.984 21 H 0.037 0.963 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.086 0.914 27 H 0.159 0.841 28 H 0.164 0.836 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.782 -11.063 -0.745 12.998 hybrid contribution -1.266 0.902 0.547 1.648 sum 5.516 -10.161 -0.198 11.564 Atomic orbital electron populations 1.70096 1.07770 1.27613 1.52645 1.25887 0.95645 1.03035 0.95300 0.85458 0.78642 0.78623 0.78387 1.19859 1.21083 1.18790 1.21559 0.93799 0.90495 1.48567 0.91026 1.19383 0.89857 0.89321 0.93196 1.61855 1.37898 1.03400 1.20891 1.22047 0.95887 0.89928 0.99048 1.21375 0.97320 0.92328 1.02323 1.21654 0.94065 0.91266 0.99422 1.58649 1.13690 1.05900 1.60390 1.22147 0.92981 1.05464 0.90056 1.23041 0.93899 0.98114 1.02928 1.23123 1.03475 0.93152 1.01232 0.92948 1.01942 0.98360 0.96307 0.92293 0.91360 0.92115 0.95229 0.91378 0.84065 0.83594 0.91608 0.88882 0.87047 0.88897 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.41 13.29 21.45 0.28 -57.12 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.51 -28.64 7.82 25.60 0.20 -28.44 16 8 H 0.07 3.95 5.55 -2.91 -0.02 3.94 16 9 C 0.21 11.36 4.75 85.56 0.41 11.76 16 10 N -0.52 -22.81 4.58 -875.51 -4.01 -26.82 16 11 C 0.06 2.19 4.95 86.31 0.43 2.62 16 12 C -0.10 -2.77 5.30 30.60 0.16 -2.61 16 13 C 0.07 1.58 6.79 86.30 0.59 2.17 16 14 N -0.86 -16.84 9.62 -186.72 -1.80 -18.63 16 15 C 0.00 0.10 4.19 44.91 0.19 0.29 16 16 C -0.14 -4.53 9.31 30.62 0.29 -4.24 16 17 C -0.17 -6.62 9.41 30.62 0.29 -6.33 16 18 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 19 H -0.04 -2.24 8.02 -2.39 -0.02 -2.26 16 20 H 0.00 -0.10 7.76 -2.39 -0.02 -0.11 16 21 H 0.02 0.69 8.12 -2.39 -0.02 0.67 16 22 H 0.06 2.21 7.84 -2.39 -0.02 2.19 16 23 H 0.07 2.04 6.61 -2.39 -0.02 2.03 16 24 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.35 6.11 8.99 -89.70 -0.81 5.31 16 28 H 0.35 5.34 9.08 -89.69 -0.81 4.53 16 29 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 30 H 0.09 2.96 8.14 -2.39 -0.02 2.95 16 31 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 32 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 33 H 0.09 4.02 5.32 -2.39 -0.01 4.01 16 Total: -1.00 -63.89 268.92 -1.02 -64.91 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -0.53 Total: 15.44 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 3.01 Total: -24.41 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -5.52 Total: -102.58 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -63.89 -1.02 -64.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135313576.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.572 kcal (2) G-P(sol) polarization free energy of solvation -63.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds