Wall clock time and date at job start Mon Mar 30 2020 02:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47159 * 2 1 4 4 C 1.50707 * 109.46925 * 240.00172 * 2 1 3 5 5 H 1.07998 * 119.99654 * 239.99980 * 4 2 1 6 6 C 1.37875 * 119.99816 * 59.99656 * 4 2 1 7 7 N 1.31513 * 120.00484 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99686 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47231 * 60.00417 * 8 6 4 10 10 H 1.48505 * 109.47266 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47359 * 300.00243 * 8 6 4 12 12 C 1.52995 * 109.47304 * 120.00626 * 2 1 3 13 13 C 1.53002 * 109.46925 * 304.99429 * 12 2 1 14 14 C 1.52997 * 109.47415 * 180.02562 * 13 12 2 15 15 C 1.53006 * 109.47164 * 300.00027 * 14 13 12 16 16 C 1.52999 * 109.46626 * 59.99702 * 15 14 13 17 17 C 1.52996 * 109.47577 * 64.99403 * 12 2 1 18 18 H 1.09003 * 109.47181 * 299.99791 * 1 2 3 19 19 H 1.09004 * 109.47224 * 59.99739 * 1 2 3 20 20 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 21 21 H 0.96702 * 113.99389 * 180.02562 * 3 2 1 22 22 H 0.96997 * 120.00169 * 179.97438 * 7 6 4 23 23 H 1.08996 * 109.47575 * 184.99973 * 12 2 1 24 24 H 1.09000 * 109.46986 * 60.00086 * 13 12 2 25 25 H 1.09001 * 109.47601 * 300.00809 * 13 12 2 26 26 H 1.09001 * 109.46922 * 180.02562 * 14 13 12 27 27 H 1.09000 * 109.47140 * 59.99976 * 14 13 12 28 28 H 1.08993 * 109.46955 * 180.02562 * 15 14 13 29 29 H 1.09000 * 109.47050 * 300.00004 * 15 14 13 30 30 H 1.09000 * 109.47160 * 60.00369 * 16 15 14 31 31 H 1.09002 * 109.46719 * 180.02562 * 16 15 14 32 32 H 1.09000 * 109.47054 * 300.00355 * 17 12 2 33 33 H 1.09001 * 109.46997 * 60.00088 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.8278 -2.5198 -4.0083 10 1 1.8276 -0.4192 -5.2205 11 1 3.8072 -1.1189 -4.0079 12 6 2.0400 -0.7214 1.2491 13 6 1.4300 -0.0764 2.4953 14 6 1.9405 -0.7972 3.7445 15 6 1.5362 -2.2716 3.6836 16 6 2.1461 -2.9165 2.4374 17 6 1.6352 -2.1955 1.1879 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 2.9703 1.4235 -0.0004 22 1 0.7093 1.1618 -3.4844 23 1 3.1263 -0.6445 1.2951 24 1 0.3437 -0.1532 2.4494 25 1 1.7183 0.9739 2.5390 26 1 1.5056 -0.3380 4.6322 27 1 3.0268 -0.7200 3.7902 28 1 1.8994 -2.7851 4.5737 29 1 0.4499 -2.3489 3.6379 30 1 3.2324 -2.8393 2.4831 31 1 1.8577 -3.9668 2.3937 32 1 0.5489 -2.2724 1.1420 33 1 2.0697 -2.6550 0.3001 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000141188612.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:31 Heat of formation + Delta-G solvation = -98.233845 kcal Electronic energy + Delta-G solvation = -13661.430378 eV Core-core repulsion = 11492.102581 eV Total energy + Delta-G solvation = -2169.327797 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.10570 -37.10619 -34.25540 -32.60279 -31.48931 -29.12336 -27.32991 -24.10613 -23.26244 -21.33539 -19.90390 -18.77134 -16.93208 -16.56569 -15.85881 -15.32502 -14.94850 -14.90584 -14.32039 -13.64986 -13.34144 -13.22223 -12.99042 -12.81468 -12.75667 -12.52858 -12.25035 -11.96765 -11.85888 -11.59805 -11.42453 -11.04835 -10.90644 -10.53888 -10.37227 -9.80322 -7.97512 -6.23553 1.41537 1.41874 1.49211 2.43499 3.21281 3.95096 4.00627 4.07574 4.26061 4.47522 4.57636 4.72278 4.76586 4.78682 4.87141 4.92730 5.03867 5.11995 5.25161 5.32195 5.36435 5.41635 5.46415 5.48262 5.63352 5.67408 5.72123 5.88877 6.18747 6.34553 6.84823 7.44319 7.69184 8.99779 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.048403 B = 0.011760 C = 0.010370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.332894 B = 2380.290370 C = 2699.336483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.242 3.758 3 O -0.581 6.581 4 C -0.565 4.565 5 H 0.055 0.945 6 C 0.030 3.970 7 N -0.891 5.891 8 Si 0.944 3.056 9 H -0.272 1.272 10 H -0.288 1.288 11 H -0.272 1.272 12 C -0.093 4.093 13 C -0.108 4.108 14 C -0.114 4.114 15 C -0.114 4.114 16 C -0.116 4.116 17 C -0.101 4.101 18 H 0.028 0.972 19 H 0.051 0.949 20 H 0.044 0.956 21 H 0.353 0.647 22 H 0.255 0.745 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.944 -5.587 9.622 11.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.203 3.797 3 O -0.385 6.385 4 C -0.603 4.603 5 H 0.074 0.926 6 C -0.172 4.172 7 N -0.529 5.529 8 Si 0.770 3.230 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.198 1.198 12 C -0.112 4.112 13 C -0.146 4.146 14 C -0.151 4.151 15 C -0.151 4.151 16 C -0.153 4.153 17 C -0.139 4.139 18 H 0.047 0.953 19 H 0.070 0.930 20 H 0.063 0.937 21 H 0.197 0.803 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.193 -5.343 9.500 10.964 hybrid contribution 0.772 -0.273 -1.318 1.551 sum 1.966 -5.616 8.182 10.117 Atomic orbital electron populations 1.21576 0.96991 0.99093 0.99803 1.18825 0.91183 0.79129 0.90582 1.86450 1.24192 1.30665 1.97229 1.21994 1.32781 1.13182 0.92310 0.92637 1.25729 0.94677 0.95121 1.01650 1.70154 1.36311 1.23176 1.23217 0.85860 0.78852 0.78901 0.79383 1.19692 1.21413 1.19754 1.21604 0.98446 0.95792 0.95381 1.21531 0.99831 0.98677 0.94522 1.21533 1.00742 0.95824 0.97007 1.21516 1.00510 0.95363 0.97734 1.21570 1.00208 0.99109 0.94421 1.21471 1.00064 0.94756 0.97613 0.95275 0.93039 0.93721 0.80306 0.93545 0.93508 0.93000 0.93458 0.91170 0.92207 0.90443 0.92385 0.92325 0.91367 0.93264 0.93247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.85 7.88 71.98 0.57 -5.29 16 2 C 0.24 11.93 0.46 -11.54 -0.01 11.92 16 3 O -0.58 -30.24 11.91 -148.98 -1.77 -32.02 16 4 C -0.56 -30.36 7.48 25.60 0.19 -30.16 16 5 H 0.06 2.93 6.36 -2.91 -0.02 2.91 16 6 C 0.03 1.66 5.24 84.65 0.44 2.10 16 7 N -0.89 -52.31 10.87 21.45 0.23 -52.08 16 8 Si 0.94 43.53 29.54 68.60 2.03 45.56 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 C -0.09 -3.75 1.74 -10.80 -0.02 -3.77 16 13 C -0.11 -3.80 4.61 30.59 0.14 -3.65 16 14 C -0.11 -3.08 5.92 30.60 0.18 -2.90 16 15 C -0.11 -2.84 5.92 30.60 0.18 -2.66 16 16 C -0.12 -3.26 5.92 30.61 0.18 -3.08 16 17 C -0.10 -3.73 4.64 30.61 0.14 -3.59 16 18 H 0.03 1.33 6.35 -2.39 -0.02 1.31 16 19 H 0.05 2.91 6.07 -2.38 -0.01 2.90 16 20 H 0.04 2.10 6.57 -2.39 -0.02 2.09 16 21 H 0.35 16.49 9.04 -74.06 -0.67 15.82 16 22 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 23 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.05 1.88 6.34 -2.39 -0.02 1.87 16 25 H 0.05 1.75 7.82 -2.39 -0.02 1.73 16 26 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.05 1.86 6.57 -2.39 -0.02 1.84 16 33 H 0.05 1.99 6.32 -2.39 -0.02 1.98 16 Total: -1.00 -60.60 250.19 2.91 -57.69 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.42 Total: 21.91 kcal Atomic # 6 Polarization: -43.07 SS G_CDS: 2.01 Total: -41.07 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.23 Total: -52.08 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -1.77 Total: -32.02 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -60.60 2.91 -57.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141188612.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.540 kcal (2) G-P(sol) polarization free energy of solvation -60.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds