Wall clock time and date at job start Mon Mar 30 2020 02:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42907 * 109.47153 * 2 1 4 4 C 1.50694 * 109.47052 * 120.00116 * 2 1 3 5 5 H 1.08006 * 119.99887 * 95.05712 * 4 2 1 6 6 C 1.37878 * 120.00014 * 275.04745 * 4 2 1 7 7 N 1.31517 * 119.99771 * 186.27841 * 6 4 2 8 8 Si 1.86799 * 120.00105 * 6.28728 * 6 4 2 9 9 H 1.48502 * 109.46644 * 268.30684 * 8 6 4 10 10 H 1.48500 * 109.47151 * 28.30279 * 8 6 4 11 11 H 1.48495 * 109.47340 * 148.30919 * 8 6 4 12 12 C 1.53001 * 109.46900 * 240.00516 * 2 1 3 13 13 C 1.53007 * 109.47072 * 180.02562 * 12 2 1 14 14 C 1.52996 * 109.46844 * 179.97438 * 13 12 2 15 15 C 1.52996 * 109.47206 * 60.00139 * 14 13 12 16 16 C 1.53000 * 109.47006 * 299.99430 * 15 14 13 17 17 C 1.52997 * 109.47533 * 59.99676 * 12 2 1 18 18 H 1.09005 * 109.46630 * 292.72555 * 1 2 3 19 19 H 1.09004 * 109.46849 * 52.72111 * 1 2 3 20 20 H 1.08995 * 109.47247 * 172.72323 * 1 2 3 21 21 H 0.96701 * 113.99761 * 180.02562 * 3 2 1 22 22 H 0.97003 * 119.99359 * 180.02562 * 7 6 4 23 23 H 1.09003 * 109.46770 * 299.99497 * 12 2 1 24 24 H 1.09001 * 109.46746 * 299.99845 * 13 12 2 25 25 H 1.09000 * 109.47194 * 59.99351 * 13 12 2 26 26 H 1.09001 * 109.47696 * 299.99721 * 14 13 12 27 27 H 1.08998 * 109.46677 * 179.97438 * 14 13 12 28 28 H 1.09007 * 109.47236 * 179.97438 * 15 14 13 29 29 H 1.09003 * 109.47592 * 59.99495 * 15 14 13 30 30 H 1.08998 * 109.47462 * 300.00490 * 16 15 14 31 31 H 1.09005 * 109.47385 * 179.97438 * 16 15 14 32 32 H 1.08998 * 109.47207 * 300.00038 * 17 12 2 33 33 H 1.08996 * 109.46601 * 60.00308 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.2900 -1.7581 1.1816 6 6 2.1630 -0.0229 2.4184 7 7 2.7161 -0.6070 3.4588 8 14 1.5544 1.7383 2.5501 9 1 2.6613 2.6706 2.2174 10 1 0.4305 1.9458 1.6019 11 1 1.0876 1.9984 3.9356 12 6 2.0399 -0.7212 -1.2493 13 6 3.5700 -0.7217 -1.2490 14 6 4.0799 -1.4434 -2.4980 15 6 3.5704 -0.7222 -3.7475 16 6 2.0404 -0.7217 -3.7478 17 6 1.5299 0.0001 -2.4985 18 1 -0.3633 0.3970 0.9480 19 1 -0.3633 0.6225 -0.8177 20 1 -0.3633 -1.0193 -0.1302 21 1 2.9704 1.4236 -0.0004 22 1 2.8078 -0.1234 4.2946 23 1 1.6766 -1.7488 -1.2493 24 1 3.9337 0.3058 -1.2488 25 1 3.9330 -1.2358 -0.3591 26 1 3.7162 -2.4710 -2.4979 27 1 5.1699 -1.4434 -2.4980 28 1 3.9341 -1.2362 -4.6374 29 1 3.9341 0.3053 -3.7477 30 1 1.6767 -1.7492 -3.7476 31 1 1.6774 -0.2075 -4.6377 32 1 0.4399 0.0001 -2.4985 33 1 1.8933 1.0277 -2.4985 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000141189172.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:33 Heat of formation + Delta-G solvation = -82.019139 kcal Electronic energy + Delta-G solvation = -13760.009280 eV Core-core repulsion = 11591.384605 eV Total energy + Delta-G solvation = -2168.624674 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.80539 -35.81692 -32.20179 -31.22215 -30.24584 -28.38377 -25.21969 -22.52622 -21.81632 -19.73231 -18.77629 -17.18780 -15.40260 -14.96716 -14.43811 -13.93168 -13.65445 -12.94118 -12.88397 -12.39524 -12.21344 -11.72599 -11.64609 -11.36154 -11.24160 -10.78242 -10.64786 -10.51670 -10.18460 -10.05264 -9.84604 -9.56641 -9.44946 -8.91360 -8.42431 -8.09961 -6.05072 -4.13264 3.53648 3.60962 3.81247 4.62315 5.14893 5.22175 5.24557 5.26429 5.54183 5.74906 5.82078 5.99390 6.00826 6.03139 6.06576 6.12115 6.38230 6.49634 6.54362 6.59844 6.61394 6.68068 6.76247 6.87812 7.03004 7.12404 7.21185 7.50480 7.71527 8.29810 8.83298 8.99693 9.59241 11.04731 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049136 B = 0.012906 C = 0.011739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.715287 B = 2169.014386 C = 2384.609133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.221 3.779 3 O -0.569 6.569 4 C -0.548 4.548 5 H 0.075 0.925 6 C 0.070 3.930 7 N -0.897 5.897 8 Si 0.937 3.063 9 H -0.295 1.295 10 H -0.260 1.260 11 H -0.328 1.328 12 C -0.093 4.093 13 C -0.108 4.108 14 C -0.119 4.119 15 C -0.117 4.117 16 C -0.118 4.118 17 C -0.114 4.114 18 H 0.053 0.947 19 H 0.032 0.968 20 H 0.053 0.947 21 H 0.363 0.637 22 H 0.263 0.737 23 H 0.063 0.937 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 0.830 -11.627 11.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.182 3.818 3 O -0.377 6.377 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.133 4.133 7 N -0.534 5.534 8 Si 0.773 3.227 9 H -0.223 1.223 10 H -0.186 1.186 11 H -0.260 1.260 12 C -0.112 4.112 13 C -0.145 4.145 14 C -0.156 4.156 15 C -0.154 4.154 16 C -0.156 4.156 17 C -0.151 4.151 18 H 0.072 0.928 19 H 0.051 0.949 20 H 0.072 0.928 21 H 0.211 0.789 22 H 0.072 0.928 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.441 0.942 -11.464 11.512 hybrid contribution 0.372 0.644 0.240 0.782 sum -0.070 1.587 -11.224 11.336 Atomic orbital electron populations 1.21965 0.96422 0.99815 1.00396 1.19230 0.91032 0.78970 0.92610 1.86181 1.25883 1.30628 1.94992 1.21389 1.45476 0.98590 0.93086 0.90742 1.25103 0.93463 0.99546 0.95235 1.69994 1.42579 1.38287 1.02538 0.85901 0.80233 0.83235 0.73355 1.22292 1.18586 1.26005 1.21622 0.95225 0.99459 0.94910 1.21489 0.95825 0.99911 0.97292 1.21560 0.99374 0.99388 0.95295 1.21521 0.95983 1.00395 0.97523 1.21558 0.95567 1.00413 0.98031 1.21612 0.99892 0.99617 0.94016 0.92770 0.94918 0.92843 0.78921 0.92825 0.91881 0.93024 0.90347 0.92553 0.92898 0.93143 0.92425 0.92604 0.93101 0.92534 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 7.76 37.16 0.29 -2.50 16 2 C 0.22 4.98 0.40 -91.77 -0.04 4.95 16 3 O -0.57 -12.83 7.85 -35.23 -0.28 -13.10 16 4 C -0.55 -14.80 7.49 -34.44 -0.26 -15.06 16 5 H 0.07 2.19 7.98 -52.48 -0.42 1.77 16 6 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 7 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 8 Si 0.94 24.05 24.31 -169.99 -4.13 19.92 16 9 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 10 H -0.26 -6.56 5.18 56.52 0.29 -6.27 16 11 H -0.33 -8.67 7.11 56.52 0.40 -8.27 16 12 C -0.09 -1.78 1.59 -90.62 -0.14 -1.93 16 13 C -0.11 -1.95 4.65 -26.73 -0.12 -2.07 16 14 C -0.12 -1.78 5.92 -26.74 -0.16 -1.94 16 15 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 16 C -0.12 -1.66 5.92 -26.71 -0.16 -1.82 16 17 C -0.11 -1.89 4.71 -26.71 -0.13 -2.02 16 18 H 0.05 1.26 5.74 -51.93 -0.30 0.96 16 19 H 0.03 0.64 6.84 -51.93 -0.36 0.28 16 20 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 21 H 0.36 7.59 7.16 45.56 0.33 7.92 16 22 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.05 0.91 6.78 -51.93 -0.35 0.56 16 25 H 0.08 1.62 7.17 -51.93 -0.37 1.25 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.93 6.60 -51.93 -0.34 0.59 16 33 H 0.06 1.06 7.68 -51.93 -0.40 0.67 16 LS Contribution 244.73 15.07 3.69 3.69 Total: -1.00 -29.57 244.73 -5.76 -35.33 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -4.84 Total: 2.95 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -0.97 Total: -22.23 kcal Atomic # 7 Polarization: -27.32 SS G_CDS: 0.77 Total: -26.55 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.28 Total: -13.10 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -4.13 Total: 19.92 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.57 -5.76 -35.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141189172.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.693 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds