Wall clock time and date at job start Mon Mar 30 2020 02:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42907 * 109.47153 * 2 1 4 4 C 1.50694 * 109.47052 * 120.00116 * 2 1 3 5 5 H 1.08006 * 119.99887 * 95.05712 * 4 2 1 6 6 C 1.37878 * 120.00014 * 275.04745 * 4 2 1 7 7 N 1.31517 * 119.99771 * 186.27841 * 6 4 2 8 8 Si 1.86799 * 120.00105 * 6.28728 * 6 4 2 9 9 H 1.48502 * 109.46644 * 268.30684 * 8 6 4 10 10 H 1.48500 * 109.47151 * 28.30279 * 8 6 4 11 11 H 1.48495 * 109.47340 * 148.30919 * 8 6 4 12 12 C 1.53001 * 109.46900 * 240.00516 * 2 1 3 13 13 C 1.53007 * 109.47072 * 180.02562 * 12 2 1 14 14 C 1.52996 * 109.46844 * 179.97438 * 13 12 2 15 15 C 1.52996 * 109.47206 * 60.00139 * 14 13 12 16 16 C 1.53000 * 109.47006 * 299.99430 * 15 14 13 17 17 C 1.52997 * 109.47533 * 59.99676 * 12 2 1 18 18 H 1.09005 * 109.46630 * 292.72555 * 1 2 3 19 19 H 1.09004 * 109.46849 * 52.72111 * 1 2 3 20 20 H 1.08995 * 109.47247 * 172.72323 * 1 2 3 21 21 H 0.96701 * 113.99761 * 180.02562 * 3 2 1 22 22 H 0.97003 * 119.99359 * 180.02562 * 7 6 4 23 23 H 1.09003 * 109.46770 * 299.99497 * 12 2 1 24 24 H 1.09001 * 109.46746 * 299.99845 * 13 12 2 25 25 H 1.09000 * 109.47194 * 59.99351 * 13 12 2 26 26 H 1.09001 * 109.47696 * 299.99721 * 14 13 12 27 27 H 1.08998 * 109.46677 * 179.97438 * 14 13 12 28 28 H 1.09007 * 109.47236 * 179.97438 * 15 14 13 29 29 H 1.09003 * 109.47592 * 59.99495 * 15 14 13 30 30 H 1.08998 * 109.47462 * 300.00490 * 16 15 14 31 31 H 1.09005 * 109.47385 * 179.97438 * 16 15 14 32 32 H 1.08998 * 109.47207 * 300.00038 * 17 12 2 33 33 H 1.08996 * 109.46601 * 60.00308 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.2900 -1.7581 1.1816 6 6 2.1630 -0.0229 2.4184 7 7 2.7161 -0.6070 3.4588 8 14 1.5544 1.7383 2.5501 9 1 2.6613 2.6706 2.2174 10 1 0.4305 1.9458 1.6019 11 1 1.0876 1.9984 3.9356 12 6 2.0399 -0.7212 -1.2493 13 6 3.5700 -0.7217 -1.2490 14 6 4.0799 -1.4434 -2.4980 15 6 3.5704 -0.7222 -3.7475 16 6 2.0404 -0.7217 -3.7478 17 6 1.5299 0.0001 -2.4985 18 1 -0.3633 0.3970 0.9480 19 1 -0.3633 0.6225 -0.8177 20 1 -0.3633 -1.0193 -0.1302 21 1 2.9704 1.4236 -0.0004 22 1 2.8078 -0.1234 4.2946 23 1 1.6766 -1.7488 -1.2493 24 1 3.9337 0.3058 -1.2488 25 1 3.9330 -1.2358 -0.3591 26 1 3.7162 -2.4710 -2.4979 27 1 5.1699 -1.4434 -2.4980 28 1 3.9341 -1.2362 -4.6374 29 1 3.9341 0.3053 -3.7477 30 1 1.6767 -1.7492 -3.7476 31 1 1.6774 -0.2075 -4.6377 32 1 0.4399 0.0001 -2.4985 33 1 1.8933 1.0277 -2.4985 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000141189172.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:32 Heat of formation + Delta-G solvation = -101.670532 kcal Electronic energy + Delta-G solvation = -13760.861428 eV Core-core repulsion = 11591.384605 eV Total energy + Delta-G solvation = -2169.476823 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.35723 -37.36914 -34.35566 -32.88525 -31.54604 -29.93937 -27.24842 -24.04839 -23.13766 -21.21009 -20.31530 -19.19443 -17.08776 -17.02950 -15.93461 -15.27980 -14.96135 -14.79908 -14.41557 -14.14753 -13.96062 -13.41672 -13.23067 -13.01441 -12.79518 -12.29725 -12.20084 -12.04316 -11.82084 -11.80752 -11.24692 -11.18824 -11.01023 -10.81853 -10.41452 -9.92321 -8.28786 -6.37655 1.46964 1.51551 1.74852 2.47744 3.06955 3.73222 3.92985 4.03205 4.04348 4.43600 4.50779 4.60348 4.71275 4.73746 4.78847 4.83476 4.93652 5.00702 5.13000 5.22555 5.27307 5.37712 5.38016 5.44715 5.49677 5.56636 5.69044 5.77677 5.82438 6.13074 6.67913 7.05772 7.39738 8.85103 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049136 B = 0.012906 C = 0.011739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.715287 B = 2169.014386 C = 2384.609133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.217 3.783 3 O -0.569 6.569 4 C -0.537 4.537 5 H 0.036 0.964 6 C 0.018 3.982 7 N -0.945 5.945 8 Si 0.994 3.006 9 H -0.287 1.287 10 H -0.250 1.250 11 H -0.340 1.340 12 C -0.088 4.088 13 C -0.106 4.106 14 C -0.115 4.115 15 C -0.113 4.113 16 C -0.115 4.115 17 C -0.108 4.108 18 H 0.035 0.965 19 H 0.057 0.943 20 H 0.062 0.938 21 H 0.370 0.630 22 H 0.262 0.738 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.244 1.874 -14.211 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.178 3.822 3 O -0.377 6.377 4 C -0.574 4.574 5 H 0.055 0.945 6 C -0.180 4.180 7 N -0.585 5.585 8 Si 0.828 3.172 9 H -0.214 1.214 10 H -0.175 1.175 11 H -0.273 1.273 12 C -0.107 4.107 13 C -0.143 4.143 14 C -0.152 4.152 15 C -0.150 4.150 16 C -0.152 4.152 17 C -0.145 4.145 18 H 0.054 0.946 19 H 0.076 0.924 20 H 0.081 0.919 21 H 0.218 0.782 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.828 1.985 -14.078 14.241 hybrid contribution 0.516 0.234 1.041 1.185 sum -0.312 2.219 -13.037 13.229 Atomic orbital electron populations 1.21933 0.95366 1.00943 1.00388 1.19246 0.91795 0.78993 0.92160 1.86132 1.26636 1.30159 1.94804 1.21678 1.43749 0.97154 0.94867 0.94535 1.25831 0.93956 1.03087 0.95102 1.70117 1.45093 1.39971 1.03312 0.84972 0.80170 0.79318 0.72706 1.21418 1.17469 1.27336 1.21498 0.95803 0.98672 0.94748 1.21416 0.95269 1.00125 0.97523 1.21523 1.00138 0.99043 0.94533 1.21510 0.95602 1.00668 0.97259 1.21545 0.95859 1.00460 0.97376 1.21546 1.00033 0.99313 0.93638 0.94591 0.92380 0.91912 0.78150 0.92930 0.92977 0.92559 0.94204 0.92749 0.91715 0.90740 0.92000 0.92382 0.90801 0.92247 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.36 7.76 71.98 0.56 -4.80 16 2 C 0.22 9.61 0.40 -11.54 0.00 9.60 16 3 O -0.57 -24.52 7.85 -148.98 -1.17 -25.69 16 4 C -0.54 -29.55 7.49 25.60 0.19 -29.35 16 5 H 0.04 2.25 7.98 -2.91 -0.02 2.22 16 6 C 0.02 1.05 5.46 84.65 0.46 1.52 16 7 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 8 Si 0.99 49.71 24.31 68.60 1.67 51.38 16 9 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 10 H -0.25 -11.95 5.18 99.48 0.52 -11.43 16 11 H -0.34 -17.62 7.11 99.48 0.71 -16.92 16 12 C -0.09 -3.26 1.59 -10.79 -0.02 -3.28 16 13 C -0.11 -3.75 4.65 30.60 0.14 -3.61 16 14 C -0.11 -3.20 5.92 30.59 0.18 -3.02 16 15 C -0.11 -2.62 5.92 30.59 0.18 -2.44 16 16 C -0.11 -2.77 5.92 30.61 0.18 -2.59 16 17 C -0.11 -3.24 4.71 30.61 0.14 -3.10 16 18 H 0.04 1.60 5.74 -2.38 -0.01 1.58 16 19 H 0.06 2.11 6.84 -2.39 -0.02 2.09 16 20 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 21 H 0.37 14.87 7.16 -74.06 -0.53 14.33 16 22 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 23 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.06 1.91 6.78 -2.39 -0.02 1.89 16 25 H 0.04 1.69 7.17 -2.39 -0.02 1.67 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.06 1.75 6.60 -2.39 -0.02 1.73 16 33 H 0.06 1.85 7.68 -2.39 -0.02 1.83 16 Total: -1.00 -63.60 244.73 3.17 -60.43 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.35 Total: 13.98 kcal Atomic # 6 Polarization: -43.08 SS G_CDS: 2.02 Total: -41.06 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.30 Total: -59.03 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -1.17 Total: -25.69 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 1.67 Total: 51.38 kcal Total: -63.60 3.17 -60.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141189172.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.238 kcal (2) G-P(sol) polarization free energy of solvation -63.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds