Wall clock time and date at job start Mon Mar 30 2020 02:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47149 * 2 1 4 4 C 1.52998 * 109.47331 * 120.00372 * 2 1 3 5 5 H 1.08999 * 110.67672 * 302.96063 * 4 2 1 6 6 C 1.54999 * 110.61924 * 180.02562 * 4 2 1 7 7 C 1.54810 * 102.12305 * 204.45737 * 6 4 2 8 8 C 1.54196 * 104.14628 * 20.88499 * 7 6 4 9 9 C 1.53002 * 110.00039 * 121.52151 * 8 7 6 10 10 C 1.50690 * 109.87243 * 242.59953 * 8 7 6 11 11 H 1.08002 * 120.00494 * 359.28923 * 10 8 7 12 12 C 1.37880 * 120.00033 * 179.28695 * 10 8 7 13 13 N 1.31515 * 119.99758 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 120.00426 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47063 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47210 * 120.00020 * 14 12 10 17 17 H 1.48492 * 109.47807 * 240.00586 * 14 12 10 18 18 O 1.43742 * 107.29773 * 2.02541 * 8 7 6 19 19 H 1.08998 * 109.46958 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.47011 * 299.99523 * 1 2 3 21 21 H 1.08997 * 109.47092 * 59.99541 * 1 2 3 22 22 H 1.08999 * 109.47368 * 239.99926 * 2 1 3 23 23 H 1.09004 * 109.47235 * 180.02562 * 3 2 1 24 24 H 1.08997 * 109.47498 * 300.00210 * 3 2 1 25 25 H 1.09000 * 109.47433 * 60.00401 * 3 2 1 26 26 H 1.09002 * 110.90669 * 322.67181 * 6 4 2 27 27 H 1.08997 * 110.90878 * 86.24287 * 6 4 2 28 28 H 1.08998 * 110.48877 * 139.57646 * 7 6 4 29 29 H 1.09009 * 110.48570 * 262.21776 * 7 6 4 30 30 H 1.09005 * 109.47072 * 300.63410 * 9 8 7 31 31 H 1.08994 * 109.47025 * 60.63220 * 9 8 7 32 32 H 1.09003 * 109.46831 * 180.63127 * 9 8 7 33 33 H 0.96999 * 120.00256 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6452 -0.2543 2.1514 6 6 3.5897 -0.7363 1.2763 7 6 3.8874 -1.9710 2.1614 8 6 2.5937 -2.8069 2.0896 9 6 2.9014 -4.2012 1.5396 10 6 1.9809 -2.9212 3.4615 11 1 2.4643 -2.4584 4.3092 12 6 0.8030 -3.6167 3.6347 13 7 0.2146 -4.1807 2.6025 14 14 0.0436 -3.7590 5.3354 15 1 0.8946 -3.0423 6.3190 16 1 -1.3134 -3.1561 5.3236 17 1 -0.0542 -5.1911 5.7156 18 8 1.6904 -2.1214 1.2063 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 1.8933 -0.5138 -0.8899 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 3.9950 -0.8697 0.2733 27 1 3.9795 0.1731 1.7336 28 1 4.7293 -2.5346 1.7592 29 1 4.0877 -1.6650 3.1883 30 1 3.3369 -4.1112 0.5444 31 1 3.6066 -4.7050 2.2006 32 1 1.9798 -4.7805 1.4820 33 1 -0.6138 -4.6703 2.7243 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000143045354.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:35 Heat of formation + Delta-G solvation = -66.661826 kcal Electronic energy + Delta-G solvation = -13615.735788 eV Core-core repulsion = 11447.777057 eV Total energy + Delta-G solvation = -2167.958731 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.50268 -34.82009 -32.37085 -30.87275 -29.17823 -26.60716 -25.18323 -24.37296 -21.29594 -19.42408 -19.06791 -16.40232 -15.42434 -14.53088 -14.42783 -13.64615 -13.29861 -12.60068 -12.42285 -12.27999 -11.97031 -11.73554 -11.23325 -11.06755 -10.89526 -10.82439 -10.53205 -10.43017 -10.33303 -10.15526 -9.89813 -9.56008 -9.23419 -9.06453 -8.42507 -7.79397 -5.88211 -4.04940 3.31469 3.39819 3.43111 4.46468 5.01222 5.35874 5.42504 5.48666 5.77223 5.83845 5.89432 6.02595 6.08489 6.24729 6.29212 6.39015 6.43583 6.56155 6.66220 6.74756 6.80870 6.89059 6.94873 7.01788 7.10817 7.19189 7.54792 7.85154 8.12436 8.42958 8.71573 9.06910 9.66620 11.13074 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.036628 B = 0.012858 C = 0.011407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.259814 B = 2177.034598 C = 2454.102536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 C -0.143 4.143 4 C 0.088 3.912 5 H 0.054 0.946 6 C -0.149 4.149 7 C -0.143 4.143 8 C 0.224 3.776 9 C -0.129 4.129 10 C -0.540 4.540 11 H 0.055 0.945 12 C 0.081 3.919 13 N -0.860 5.860 14 Si 0.884 3.116 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.284 1.284 18 O -0.351 6.351 19 H 0.067 0.933 20 H 0.048 0.952 21 H 0.041 0.959 22 H 0.068 0.932 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.013 0.987 31 H 0.036 0.964 32 H 0.089 0.911 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.230 6.672 -3.529 8.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 C -0.200 4.200 4 C 0.029 3.971 5 H 0.072 0.928 6 C -0.187 4.187 7 C -0.181 4.181 8 C 0.186 3.814 9 C -0.186 4.186 10 C -0.578 4.578 11 H 0.073 0.927 12 C -0.124 4.124 13 N -0.497 5.497 14 Si 0.712 3.288 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.210 1.210 18 O -0.270 6.270 19 H 0.086 0.914 20 H 0.067 0.933 21 H 0.060 0.940 22 H 0.086 0.914 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.032 0.968 31 H 0.055 0.945 32 H 0.107 0.893 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.909 6.452 -3.709 7.990 hybrid contribution -0.271 0.022 1.156 1.187 sum 2.637 6.473 -2.553 7.442 Atomic orbital electron populations 1.21714 0.95165 1.02713 1.00042 1.21096 0.96229 0.94914 0.98478 1.21805 1.00784 0.96277 1.01151 1.22740 0.91773 0.87012 0.95612 0.92777 1.23109 0.97935 0.98147 0.99467 1.23092 0.99913 0.96217 0.98911 1.19625 0.83880 0.88780 0.89119 1.21767 1.01994 0.98885 0.96001 1.21495 1.08550 1.34777 0.92977 0.92709 1.24980 0.96714 0.94597 0.96095 1.69974 1.17449 1.33345 1.28928 0.86691 0.79316 0.77708 0.85121 1.19851 1.21006 1.21007 1.88997 1.57317 1.14437 1.66265 0.91377 0.93308 0.94032 0.91391 0.92827 0.93144 0.92909 0.92239 0.92425 0.93072 0.92013 0.96807 0.94476 0.89283 0.93269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.11 37.16 0.34 -2.10 16 2 C -0.09 -1.56 2.72 -90.62 -0.25 -1.81 16 3 C -0.14 -2.01 8.97 37.16 0.33 -1.68 16 4 C 0.09 1.86 2.78 -25.68 -0.07 1.79 16 5 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 6 C -0.15 -2.84 5.45 -24.72 -0.13 -2.97 16 7 C -0.14 -3.10 6.27 -25.15 -0.16 -3.26 16 8 C 0.22 5.74 0.75 -91.15 -0.07 5.67 16 9 C -0.13 -3.23 8.46 37.16 0.31 -2.92 16 10 C -0.54 -15.08 8.18 -34.44 -0.28 -15.36 16 11 H 0.05 1.52 7.33 -52.49 -0.38 1.13 16 12 C 0.08 2.27 5.26 -17.82 -0.09 2.18 16 13 N -0.86 -25.02 10.94 55.43 0.61 -24.41 16 14 Si 0.88 21.49 29.54 -169.99 -5.02 16.47 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 O -0.35 -9.12 9.70 -35.23 -0.34 -9.47 16 19 H 0.07 1.38 7.90 -51.93 -0.41 0.97 16 20 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 23 H 0.05 0.71 7.20 -51.93 -0.37 0.34 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 1.06 8.06 -51.93 -0.42 0.64 16 27 H 0.06 0.97 8.04 -51.93 -0.42 0.55 16 28 H 0.05 1.02 7.71 -51.93 -0.40 0.62 16 29 H 0.06 1.33 7.40 -51.92 -0.38 0.94 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 2.46 6.06 -51.93 -0.31 2.15 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 262.59 15.07 3.96 3.96 Total: -1.00 -29.36 262.59 -6.49 -35.85 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -5.62 Total: -1.94 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -0.07 Total: -20.46 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.61 Total: -24.41 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.34 Total: -9.47 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.36 -6.49 -35.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143045354.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.810 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds