Wall clock time and date at job start Mon Mar 30 2020 02:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47230 * 2 1 4 4 C 1.52992 * 109.47523 * 120.00298 * 2 1 3 5 5 H 1.09002 * 110.55458 * 61.42718 * 4 2 1 6 6 C 1.54994 * 110.75306 * 184.39507 * 4 2 1 7 7 C 1.54818 * 102.09222 * 155.59088 * 6 4 2 8 8 C 1.54100 * 104.18506 * 339.12155 * 7 6 4 9 9 C 1.52997 * 109.87873 * 117.39679 * 8 7 6 10 10 C 1.50706 * 109.99995 * 238.47718 * 8 7 6 11 11 H 1.07998 * 120.00005 * 359.60981 * 10 8 7 12 12 C 1.37869 * 119.99764 * 179.61734 * 10 8 7 13 13 N 1.31523 * 120.00038 * 180.02562 * 12 10 8 14 14 Si 1.86804 * 120.00286 * 359.97438 * 12 10 8 15 15 H 1.48499 * 109.47036 * 90.00210 * 14 12 10 16 16 H 1.48498 * 109.47030 * 210.00550 * 14 12 10 17 17 H 1.48500 * 109.46811 * 329.99904 * 14 12 10 18 18 O 1.43740 * 107.29383 * 357.96787 * 8 7 6 19 19 H 1.09005 * 109.46679 * 299.99388 * 1 2 3 20 20 H 1.08999 * 109.47547 * 59.99756 * 1 2 3 21 21 H 1.09008 * 109.46924 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46679 * 240.00612 * 2 1 3 23 23 H 1.08994 * 109.46894 * 60.00186 * 3 2 1 24 24 H 1.08990 * 109.47125 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47054 * 300.00545 * 3 2 1 26 26 H 1.09005 * 110.90843 * 273.78755 * 6 4 2 27 27 H 1.08996 * 110.91146 * 37.35539 * 6 4 2 28 28 H 1.09000 * 110.48536 * 220.44623 * 7 6 4 29 29 H 1.08997 * 110.48433 * 97.79921 * 7 6 4 30 30 H 1.09002 * 109.47153 * 300.71046 * 9 8 7 31 31 H 1.09001 * 109.46832 * 180.71237 * 9 8 7 32 32 H 1.09004 * 109.47261 * 60.71218 * 9 8 7 33 33 H 0.96997 * 119.99850 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.7074 -1.7593 1.2543 6 6 3.5856 -0.6431 1.3358 7 6 3.8344 -0.8159 2.8541 8 6 2.4893 -0.4358 3.5028 9 6 1.9104 -1.6420 4.2449 10 6 2.6851 0.7100 4.4619 11 1 3.6694 1.1298 4.6079 12 6 1.6077 1.2222 5.1531 13 7 1.7785 2.2226 5.9897 14 14 -0.0949 0.4965 4.9002 15 1 -0.3125 -0.6055 5.8715 16 1 -1.1188 1.5512 5.1106 17 1 -0.2067 -0.0331 3.5173 18 8 1.6008 -0.0407 2.4442 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.6767 1.9563 0.8900 24 1 3.1299 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 4.0483 -1.4526 0.7712 27 1 3.9461 0.3256 0.9898 28 1 4.6236 -0.1434 3.1902 29 1 4.0899 -1.8503 3.0834 30 1 1.7641 -2.4639 3.5440 31 1 0.9536 -1.3696 4.6904 32 1 2.6012 -1.9520 5.0292 33 1 1.0204 2.5832 6.4757 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000143045589.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:36 Heat of formation + Delta-G solvation = -53.612527 kcal Electronic energy + Delta-G solvation = -13832.817543 eV Core-core repulsion = 11665.424672 eV Total energy + Delta-G solvation = -2167.392871 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.00257 -34.90887 -32.38510 -31.17288 -29.83593 -26.71338 -25.65740 -24.53402 -21.62107 -19.50065 -18.96501 -16.94793 -15.33825 -15.15258 -14.08926 -14.03507 -13.49199 -13.09111 -12.59983 -12.53258 -12.33369 -12.11338 -11.65320 -11.17264 -11.12755 -10.79254 -10.71540 -10.44649 -10.20058 -10.03548 -9.85226 -9.65918 -9.47952 -8.93317 -8.49273 -8.16535 -6.05519 -4.12472 3.39758 3.50274 3.72640 4.56643 4.80874 5.21478 5.35134 5.37963 5.57229 5.65112 5.77081 5.87142 6.03995 6.05831 6.18865 6.24144 6.32402 6.35800 6.40192 6.46079 6.58207 6.64019 6.68248 6.71515 6.85692 6.88330 7.02202 7.29063 7.74652 8.34278 8.51291 8.95488 9.59836 11.05321 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034198 B = 0.016027 C = 0.014083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.572030 B = 1746.604249 C = 1987.779920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.144 4.144 4 C 0.070 3.930 5 H 0.048 0.952 6 C -0.152 4.152 7 C -0.130 4.130 8 C 0.190 3.810 9 C -0.157 4.157 10 C -0.510 4.510 11 H 0.077 0.923 12 C 0.083 3.917 13 N -0.896 5.896 14 Si 0.879 3.121 15 H -0.290 1.290 16 H -0.304 1.304 17 H -0.222 1.222 18 O -0.357 6.357 19 H 0.065 0.935 20 H 0.045 0.955 21 H 0.046 0.954 22 H 0.065 0.935 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.041 0.959 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.030 0.970 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.230 -6.066 -10.282 11.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.201 4.201 4 C 0.012 3.988 5 H 0.066 0.934 6 C -0.189 4.189 7 C -0.167 4.167 8 C 0.152 3.848 9 C -0.214 4.214 10 C -0.547 4.547 11 H 0.095 0.905 12 C -0.121 4.121 13 N -0.533 5.533 14 Si 0.710 3.290 15 H -0.218 1.218 16 H -0.232 1.232 17 H -0.145 1.145 18 O -0.277 6.277 19 H 0.084 0.916 20 H 0.064 0.936 21 H 0.065 0.935 22 H 0.084 0.916 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.477 -5.802 -10.145 11.697 hybrid contribution -0.722 -0.487 0.098 0.876 sum -1.199 -6.289 -10.047 11.914 Atomic orbital electron populations 1.21757 0.95384 1.01090 1.01745 1.21059 0.95984 0.97006 0.96312 1.21826 1.00755 0.95770 1.01781 1.22938 0.92599 0.95009 0.88304 0.93381 1.23208 0.96843 1.01617 0.97259 1.22851 0.99926 1.00167 0.93794 1.20057 0.85211 0.93311 0.86236 1.22478 1.00974 0.98049 0.99946 1.20959 0.96464 1.16437 1.20800 0.90501 1.25042 0.99465 0.94056 0.93530 1.69923 1.31692 1.24915 1.26771 0.87057 0.83310 0.77540 0.81141 1.21796 1.23248 1.14541 1.89276 1.54026 1.67743 1.16652 0.91574 0.93562 0.93491 0.91621 0.91020 0.92711 0.93944 0.92397 0.90569 0.91062 0.92852 0.95108 0.93602 0.92307 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.07 37.16 0.34 -1.89 16 2 C -0.09 -1.36 2.93 -90.62 -0.27 -1.63 16 3 C -0.14 -2.35 8.70 37.16 0.32 -2.02 16 4 C 0.07 1.30 3.03 -25.68 -0.08 1.22 16 5 H 0.05 0.87 8.13 -51.93 -0.42 0.44 16 6 C -0.15 -2.65 6.47 -24.72 -0.16 -2.81 16 7 C -0.13 -2.61 6.27 -25.20 -0.16 -2.76 16 8 C 0.19 4.51 0.70 -91.20 -0.06 4.44 16 9 C -0.16 -3.50 8.09 37.16 0.30 -3.20 16 10 C -0.51 -14.49 8.87 -34.44 -0.31 -14.79 16 11 H 0.08 2.34 7.59 -52.49 -0.40 1.95 16 12 C 0.08 2.44 5.45 -17.82 -0.10 2.34 16 13 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 14 Si 0.88 22.77 23.92 -169.99 -4.07 18.70 16 15 H -0.29 -7.36 6.87 56.52 0.39 -6.98 16 16 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 17 H -0.22 -5.55 5.37 56.52 0.30 -5.25 16 18 O -0.36 -8.30 6.40 -35.23 -0.23 -8.52 16 19 H 0.07 1.20 7.78 -51.93 -0.40 0.80 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 22 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.07 1.38 7.70 -51.93 -0.40 0.98 16 24 H 0.05 0.85 6.05 -51.93 -0.31 0.54 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.08 1.32 5.71 -51.93 -0.30 1.03 16 28 H 0.07 1.48 7.41 -51.93 -0.38 1.10 16 29 H 0.05 0.96 7.70 -51.93 -0.40 0.56 16 30 H 0.03 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.05 1.08 3.22 -51.93 -0.17 0.92 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 249.76 15.07 3.76 3.76 Total: -1.00 -30.47 249.76 -5.31 -35.78 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.39 Total: -1.56 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -0.17 Total: -21.10 kcal Atomic # 7 Polarization: -27.84 SS G_CDS: 0.77 Total: -27.06 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.23 Total: -8.52 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.07 Total: 18.70 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.47 -5.31 -35.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143045589.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.830 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds