Wall clock time and date at job start Mon Mar 30 2020 02:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46795 * 2 1 4 4 C 1.53002 * 109.47083 * 119.99539 * 2 1 3 5 5 H 1.09004 * 110.27366 * 299.37144 * 4 2 1 6 6 C 1.54940 * 110.31045 * 177.16761 * 4 2 1 7 7 C 1.55455 * 100.99100 * 204.69368 * 6 4 2 8 8 C 1.54387 * 102.18322 * 34.03680 * 7 6 4 9 9 C 1.52996 * 109.83042 * 219.18042 * 8 7 6 10 10 C 1.50697 * 109.82709 * 98.30324 * 8 7 6 11 11 H 1.08002 * 120.00260 * 25.54574 * 10 8 7 12 12 C 1.37877 * 120.00195 * 205.54695 * 10 8 7 13 13 N 1.31513 * 120.00185 * 176.88523 * 12 10 8 14 14 Si 1.86805 * 119.99638 * 356.89251 * 12 10 8 15 15 H 1.48494 * 109.47289 * 86.52824 * 14 12 10 16 16 H 1.48501 * 109.46882 * 206.52791 * 14 12 10 17 17 H 1.48499 * 109.46900 * 326.52730 * 14 12 10 18 18 O 1.43235 * 107.66616 * 338.74527 * 8 7 6 19 19 H 1.08994 * 109.47463 * 299.99970 * 1 2 3 20 20 H 1.09000 * 109.47190 * 60.00520 * 1 2 3 21 21 H 1.08998 * 109.47314 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47154 * 239.99607 * 2 1 3 23 23 H 1.08994 * 109.47091 * 59.99802 * 3 2 1 24 24 H 1.09004 * 109.46843 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.46827 * 299.99702 * 3 2 1 26 26 H 1.09000 * 111.12190 * 322.56135 * 6 4 2 27 27 H 1.08995 * 111.12522 * 86.72599 * 6 4 2 28 28 H 1.09002 * 110.83281 * 275.89605 * 7 6 4 29 29 H 1.08996 * 110.92483 * 152.22502 * 7 6 4 30 30 H 1.09001 * 109.47338 * 295.50753 * 9 8 7 31 31 H 1.08990 * 109.47177 * 175.50071 * 9 8 7 32 32 H 1.09005 * 109.46788 * 55.50393 * 9 8 7 33 33 H 0.97007 * 119.99557 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6931 -0.2110 2.1480 6 6 3.5876 -0.7950 1.2336 7 6 3.8341 -2.0382 2.1337 8 6 2.6212 -2.9313 1.7951 9 6 2.1090 -3.6142 3.0648 10 6 3.0200 -3.9719 0.7806 11 1 4.0502 -4.2876 0.7072 12 6 2.0697 -4.5209 -0.0539 13 7 2.4272 -5.3835 -0.9800 14 14 0.2742 -4.0394 0.1309 15 1 0.0070 -2.8116 -0.6602 16 1 -0.5876 -5.1435 -0.3625 17 1 -0.0240 -3.7806 1.5625 18 8 1.5992 -2.0883 1.2506 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 1.6766 1.9563 0.8899 24 1 3.1300 1.4426 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 3.9626 -0.9620 0.2239 27 1 4.0280 0.1008 1.6712 28 1 3.8292 -1.7607 3.1878 29 1 4.7674 -2.5336 1.8661 30 1 2.8733 -4.2907 3.4472 31 1 1.2059 -4.1793 2.8344 32 1 1.8827 -2.8589 3.8175 33 1 1.7585 -5.7700 -1.5669 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000143045779.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:37 Heat of formation + Delta-G solvation = -64.980075 kcal Electronic energy + Delta-G solvation = -13832.943112 eV Core-core repulsion = 11665.057307 eV Total energy + Delta-G solvation = -2167.885805 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.99232 -35.01757 -32.31510 -31.31518 -29.92006 -26.76464 -25.34736 -24.48764 -21.50772 -19.65278 -19.19676 -17.01063 -15.76794 -14.95013 -13.97030 -13.85816 -13.49806 -12.74257 -12.69515 -12.47261 -12.13700 -11.86002 -11.85605 -11.74860 -11.23955 -10.90315 -10.59989 -10.40928 -10.20433 -10.00919 -9.92190 -9.84038 -9.44802 -8.88494 -8.47760 -8.09315 -5.97181 -4.05781 3.52385 3.63397 3.76191 4.61260 4.86357 5.20873 5.32635 5.37634 5.57264 5.66275 5.71273 5.81745 5.95852 6.03275 6.13071 6.17144 6.28652 6.33042 6.40582 6.52360 6.58438 6.68135 6.69304 6.76249 6.84059 6.89974 7.01597 7.44715 7.78383 8.24406 8.58206 8.98537 9.68415 11.12403 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032173 B = 0.017528 C = 0.014293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.076287 B = 1597.040193 C = 1958.551282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.142 4.142 4 C 0.089 3.911 5 H 0.052 0.948 6 C -0.141 4.141 7 C -0.133 4.133 8 C 0.195 3.805 9 C -0.145 4.145 10 C -0.525 4.525 11 H 0.076 0.924 12 C 0.079 3.921 13 N -0.902 5.902 14 Si 0.919 3.081 15 H -0.275 1.275 16 H -0.321 1.321 17 H -0.257 1.257 18 O -0.375 6.375 19 H 0.046 0.954 20 H 0.045 0.955 21 H 0.067 0.933 22 H 0.077 0.923 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.025 0.975 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.321 10.967 4.211 11.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.199 4.199 4 C 0.032 3.968 5 H 0.070 0.930 6 C -0.179 4.179 7 C -0.171 4.171 8 C 0.158 3.842 9 C -0.203 4.203 10 C -0.562 4.562 11 H 0.094 0.906 12 C -0.124 4.124 13 N -0.539 5.539 14 Si 0.754 3.246 15 H -0.202 1.202 16 H -0.252 1.252 17 H -0.183 1.183 18 O -0.296 6.296 19 H 0.066 0.934 20 H 0.064 0.936 21 H 0.086 0.914 22 H 0.095 0.905 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.550 10.784 4.007 11.609 hybrid contribution -0.674 0.208 0.018 0.706 sum -2.224 10.992 4.025 11.916 Atomic orbital electron populations 1.21867 0.95497 1.02784 1.00259 1.21242 0.96084 0.95227 0.99022 1.21791 1.01015 0.95926 1.01176 1.22763 0.93007 0.85361 0.95700 0.93029 1.23165 0.96000 0.97543 1.01168 1.23099 1.00777 0.95828 0.97390 1.20114 0.83400 0.88726 0.91995 1.22334 1.01445 0.99528 0.97011 1.21085 0.96646 1.20665 1.17828 0.90627 1.24998 1.00275 0.93222 0.93859 1.69976 1.34697 1.29768 1.19508 0.86171 0.83099 0.75780 0.79598 1.20188 1.25186 1.18274 1.88040 1.42219 1.15243 1.84124 0.93443 0.93582 0.91447 0.90458 0.93078 0.92565 0.92905 0.90508 0.92012 0.93043 0.90820 0.92665 0.92601 0.95637 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.07 37.16 0.34 -2.16 16 2 C -0.10 -1.69 2.69 -90.62 -0.24 -1.93 16 3 C -0.14 -1.91 9.00 37.16 0.33 -1.57 16 4 C 0.09 1.71 2.96 -25.71 -0.08 1.63 16 5 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 6 C -0.14 -2.55 5.55 -24.40 -0.14 -2.69 16 7 C -0.13 -2.66 6.09 -24.70 -0.15 -2.81 16 8 C 0.20 4.65 0.78 -91.05 -0.07 4.58 16 9 C -0.15 -3.22 8.48 37.16 0.32 -2.90 16 10 C -0.53 -14.93 8.75 -34.44 -0.30 -15.23 16 11 H 0.08 2.31 7.80 -52.49 -0.41 1.90 16 12 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 13 N -0.90 -28.31 13.96 55.43 0.77 -27.53 16 14 Si 0.92 24.25 24.09 -169.99 -4.10 20.16 16 15 H -0.27 -7.11 5.55 56.52 0.31 -6.79 16 16 H -0.32 -8.59 7.11 56.52 0.40 -8.19 16 17 H -0.26 -6.57 5.18 56.52 0.29 -6.27 16 18 O -0.37 -8.83 5.24 -35.23 -0.18 -9.02 16 19 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 21 H 0.07 1.35 5.73 -51.93 -0.30 1.05 16 22 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.72 7.28 -51.93 -0.38 0.34 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 1.48 8.06 -51.93 -0.42 1.06 16 27 H 0.06 0.92 8.05 -51.93 -0.42 0.50 16 28 H 0.05 0.91 7.81 -51.93 -0.41 0.51 16 29 H 0.07 1.50 7.64 -51.93 -0.40 1.10 16 30 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 1.31 5.61 -51.93 -0.29 1.01 16 32 H 0.02 0.49 8.09 -51.93 -0.42 0.07 16 33 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 251.33 15.07 3.79 3.79 Total: -1.00 -30.87 251.33 -5.53 -36.40 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -5.73 Total: -2.98 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -0.09 Total: -20.82 kcal Atomic # 7 Polarization: -28.31 SS G_CDS: 0.77 Total: -27.53 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.18 Total: -9.02 kcal Atomic # 14 Polarization: 24.25 SS G_CDS: -4.10 Total: 20.16 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.87 -5.53 -36.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143045779.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.579 kcal (2) G-P(sol) polarization free energy of solvation -30.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds