Wall clock time and date at job start Mon Mar 30 2020 02:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46795 * 2 1 4 4 C 1.53002 * 109.47083 * 119.99539 * 2 1 3 5 5 H 1.09004 * 110.27366 * 299.37144 * 4 2 1 6 6 C 1.54940 * 110.31045 * 177.16761 * 4 2 1 7 7 C 1.55455 * 100.99100 * 204.69368 * 6 4 2 8 8 C 1.54387 * 102.18322 * 34.03680 * 7 6 4 9 9 C 1.52996 * 109.83042 * 219.18042 * 8 7 6 10 10 C 1.50697 * 109.82709 * 98.30324 * 8 7 6 11 11 H 1.08002 * 120.00260 * 25.54574 * 10 8 7 12 12 C 1.37877 * 120.00195 * 205.54695 * 10 8 7 13 13 N 1.31513 * 120.00185 * 176.88523 * 12 10 8 14 14 Si 1.86805 * 119.99638 * 356.89251 * 12 10 8 15 15 H 1.48494 * 109.47289 * 86.52824 * 14 12 10 16 16 H 1.48501 * 109.46882 * 206.52791 * 14 12 10 17 17 H 1.48499 * 109.46900 * 326.52730 * 14 12 10 18 18 O 1.43235 * 107.66616 * 338.74527 * 8 7 6 19 19 H 1.08994 * 109.47463 * 299.99970 * 1 2 3 20 20 H 1.09000 * 109.47190 * 60.00520 * 1 2 3 21 21 H 1.08998 * 109.47314 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47154 * 239.99607 * 2 1 3 23 23 H 1.08994 * 109.47091 * 59.99802 * 3 2 1 24 24 H 1.09004 * 109.46843 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.46827 * 299.99702 * 3 2 1 26 26 H 1.09000 * 111.12190 * 322.56135 * 6 4 2 27 27 H 1.08995 * 111.12522 * 86.72599 * 6 4 2 28 28 H 1.09002 * 110.83281 * 275.89605 * 7 6 4 29 29 H 1.08996 * 110.92483 * 152.22502 * 7 6 4 30 30 H 1.09001 * 109.47338 * 295.50753 * 9 8 7 31 31 H 1.08990 * 109.47177 * 175.50071 * 9 8 7 32 32 H 1.09005 * 109.46788 * 55.50393 * 9 8 7 33 33 H 0.97007 * 119.99557 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6931 -0.2110 2.1480 6 6 3.5876 -0.7950 1.2336 7 6 3.8341 -2.0382 2.1337 8 6 2.6212 -2.9313 1.7951 9 6 2.1090 -3.6142 3.0648 10 6 3.0200 -3.9719 0.7806 11 1 4.0502 -4.2876 0.7072 12 6 2.0697 -4.5209 -0.0539 13 7 2.4272 -5.3835 -0.9800 14 14 0.2742 -4.0394 0.1309 15 1 0.0070 -2.8116 -0.6602 16 1 -0.5876 -5.1435 -0.3625 17 1 -0.0240 -3.7806 1.5625 18 8 1.5992 -2.0883 1.2506 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 1.6766 1.9563 0.8899 24 1 3.1300 1.4426 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 3.9626 -0.9620 0.2239 27 1 4.0280 0.1008 1.6712 28 1 3.8292 -1.7607 3.1878 29 1 4.7674 -2.5336 1.8661 30 1 2.8733 -4.2907 3.4472 31 1 1.2059 -4.1793 2.8344 32 1 1.8827 -2.8589 3.8175 33 1 1.7585 -5.7700 -1.5669 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000143045779.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:37 Heat of formation + Delta-G solvation = -84.841818 kcal Electronic energy + Delta-G solvation = -13833.804382 eV Core-core repulsion = 11665.057307 eV Total energy + Delta-G solvation = -2168.747075 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.63611 -36.48505 -34.43656 -33.02873 -31.60505 -27.95235 -27.31084 -26.18750 -23.01083 -21.28230 -20.80831 -19.06301 -17.38750 -16.86266 -15.63338 -15.36908 -15.12162 -14.72706 -14.19508 -14.10271 -13.84739 -13.57576 -13.18945 -12.99169 -12.81682 -12.60643 -12.26261 -12.14311 -11.76848 -11.72732 -11.66047 -11.38663 -11.09784 -10.85507 -10.61877 -9.94608 -8.27775 -6.37349 1.41133 1.52435 1.63783 2.48169 3.03383 3.34164 3.83122 3.94444 4.18893 4.23091 4.35747 4.47212 4.55799 4.72065 4.79455 4.82770 4.88347 4.94226 5.01636 5.03362 5.06443 5.15345 5.22153 5.28190 5.33829 5.49103 5.57249 5.68452 5.72503 6.18656 6.55442 6.79776 7.41348 8.85539 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032173 B = 0.017528 C = 0.014293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.076287 B = 1597.040193 C = 1958.551282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C -0.133 4.133 4 C 0.078 3.922 5 H 0.079 0.921 6 C -0.133 4.133 7 C -0.131 4.131 8 C 0.186 3.814 9 C -0.142 4.142 10 C -0.522 4.522 11 H 0.038 0.962 12 C 0.025 3.975 13 N -0.951 5.951 14 Si 0.976 3.024 15 H -0.272 1.272 16 H -0.332 1.332 17 H -0.242 1.242 18 O -0.398 6.398 19 H 0.069 0.931 20 H 0.062 0.938 21 H 0.031 0.969 22 H 0.043 0.957 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.036 0.964 32 H 0.059 0.941 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.899 13.852 5.971 15.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.190 4.190 4 C 0.021 3.979 5 H 0.097 0.903 6 C -0.170 4.170 7 C -0.168 4.168 8 C 0.147 3.853 9 C -0.200 4.200 10 C -0.560 4.560 11 H 0.057 0.943 12 C -0.173 4.173 13 N -0.591 5.591 14 Si 0.809 3.191 15 H -0.199 1.199 16 H -0.264 1.264 17 H -0.167 1.167 18 O -0.320 6.320 19 H 0.088 0.912 20 H 0.081 0.919 21 H 0.050 0.950 22 H 0.062 0.938 23 H 0.090 0.910 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.123 0.877 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.118 13.693 5.787 15.016 hybrid contribution -0.405 -0.662 -0.524 0.937 sum -2.523 13.031 5.263 14.278 Atomic orbital electron populations 1.21851 0.95203 1.00983 1.02262 1.21278 0.96421 0.97337 0.96813 1.21728 1.01406 0.93039 1.02843 1.23156 0.93655 0.83438 0.97616 0.90290 1.23147 0.95591 0.98393 0.99917 1.23046 0.98262 0.95759 0.99777 1.20105 0.85503 0.88594 0.91053 1.22237 1.00643 1.00180 0.96933 1.21463 0.94778 1.21339 1.18372 0.94339 1.25770 1.04168 0.93469 0.93870 1.70105 1.35802 1.31984 1.21200 0.85277 0.78606 0.74943 0.80307 1.19851 1.26365 1.16655 1.87925 1.42190 1.17491 1.84379 0.91210 0.91894 0.94997 0.93842 0.91034 0.91926 0.91657 0.92720 0.87738 0.89692 0.92193 0.92243 0.94447 0.92257 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.56 9.07 71.98 0.65 -3.91 16 2 C -0.10 -3.22 2.69 -10.79 -0.03 -3.24 16 3 C -0.13 -3.02 9.00 71.98 0.65 -2.37 16 4 C 0.08 2.73 2.96 31.26 0.09 2.82 16 5 H 0.08 2.38 8.14 -2.38 -0.02 2.37 16 6 C -0.13 -4.41 5.55 32.10 0.18 -4.23 16 7 C -0.13 -4.90 6.09 31.91 0.19 -4.71 16 8 C 0.19 8.59 0.78 -11.07 -0.01 8.58 16 9 C -0.14 -5.97 8.48 71.98 0.61 -5.36 16 10 C -0.52 -30.35 8.75 25.60 0.22 -30.13 16 11 H 0.04 2.45 7.80 -2.91 -0.02 2.43 16 12 C 0.02 1.52 5.47 84.65 0.46 1.98 16 13 N -0.95 -62.04 13.96 21.45 0.30 -61.74 16 14 Si 0.98 51.18 24.09 68.60 1.65 52.84 16 15 H -0.27 -13.94 5.55 99.48 0.55 -13.39 16 16 H -0.33 -17.69 7.11 99.48 0.71 -16.99 16 17 H -0.24 -11.92 5.18 99.48 0.52 -11.40 16 18 O -0.40 -18.01 5.24 -148.98 -0.78 -18.79 16 19 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 20 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 21 H 0.03 1.21 5.73 -2.39 -0.01 1.19 16 22 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.06 1.34 7.28 -2.39 -0.02 1.33 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 2.04 8.06 -2.39 -0.02 2.02 16 27 H 0.10 2.58 8.05 -2.39 -0.02 2.56 16 28 H 0.08 2.63 7.81 -2.39 -0.02 2.61 16 29 H 0.06 2.39 7.64 -2.39 -0.02 2.37 16 30 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.04 1.67 5.61 -2.39 -0.01 1.66 16 32 H 0.06 2.07 8.09 -2.38 -0.02 2.05 16 33 H 0.26 16.19 8.31 -92.70 -0.77 15.42 16 Total: -1.00 -68.74 251.33 4.90 -63.84 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: 0.71 Total: 4.41 kcal Atomic # 6 Polarization: -43.59 SS G_CDS: 3.03 Total: -40.56 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: 0.30 Total: -61.74 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.78 Total: -18.79 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 1.65 Total: 52.84 kcal Total: -68.74 4.90 -63.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143045779.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.002 kcal (2) G-P(sol) polarization free energy of solvation -68.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds