Wall clock time and date at job start Mon Mar 30 2020 02:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99721 * 2 1 4 4 H 1.48500 * 109.47276 * 239.99824 * 3 2 1 5 5 H 1.48495 * 109.47449 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46712 * 120.00303 * 3 2 1 7 7 C 1.37867 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00217 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47334 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99955 * 179.97438 * 10 9 7 12 12 H 1.08996 * 108.73857 * 36.69561 * 11 10 9 13 13 C 1.50463 * 108.76848 * 155.00001 * 11 10 9 14 14 C 1.54509 * 108.85320 * 213.07231 * 13 11 10 15 15 C 1.45860 * 111.58985 * 282.80702 * 14 13 11 16 16 N 1.47804 * 112.91919 * 61.32749 * 15 14 13 17 17 C 1.44273 * 109.46167 * 276.74124 * 16 15 14 18 18 C 1.54067 * 111.98335 * 96.43648 * 17 16 15 19 19 H 0.97006 * 119.99899 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.47173 * 60.00072 * 9 7 2 21 21 H 1.08999 * 109.47132 * 299.99842 * 9 7 2 22 22 H 1.00896 * 111.00015 * 56.04354 * 10 9 7 23 23 H 1.08999 * 109.57315 * 93.25746 * 13 11 10 24 24 H 1.08999 * 109.57326 * 332.88154 * 13 11 10 25 25 H 1.08998 * 109.05718 * 162.26495 * 14 13 11 26 26 H 1.08996 * 109.05889 * 43.34954 * 14 13 11 27 27 H 1.08999 * 108.79588 * 300.44041 * 15 14 13 28 28 H 1.08998 * 108.70768 * 182.15206 * 15 14 13 29 29 H 1.00901 * 110.99862 * 39.61043 * 16 15 14 30 30 H 1.09003 * 108.97821 * 217.07832 * 17 16 15 31 31 H 1.08996 * 108.97966 * 335.78928 * 17 16 15 32 32 H 1.09003 * 108.91734 * 198.19551 * 18 17 16 33 33 H 1.08997 * 108.84678 * 79.58612 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9070 0.0001 12 1 0.6106 -4.8204 -0.6164 13 6 2.4093 -5.9482 -0.6020 14 6 1.5455 -6.9827 -1.3577 15 6 0.8985 -7.9142 -0.4405 16 7 -0.0208 -7.2463 0.5047 17 6 0.7310 -6.7303 1.6228 18 6 1.0792 -5.2401 1.4451 19 1 -0.4850 0.8401 0.0004 20 1 0.6240 -2.5566 -0.8903 21 1 0.6247 -2.5570 0.8897 22 1 2.8405 -3.5486 0.7808 23 1 2.9686 -6.4477 0.1891 24 1 3.1015 -5.4730 -1.2971 25 1 2.1802 -7.5425 -2.0445 26 1 0.7806 -6.4576 -1.9299 27 1 1.6669 -8.4381 0.1279 28 1 0.3348 -8.6432 -1.0226 29 1 -0.5386 -6.5111 0.0470 30 1 0.1417 -6.8506 2.5319 31 1 1.6544 -7.3007 1.7226 32 1 1.8948 -4.9846 2.1217 33 1 0.2058 -4.6412 1.7029 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157402105.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:37 Heat of formation + Delta-G solvation = -11.352912 kcal Electronic energy + Delta-G solvation = -13016.326520 eV Core-core repulsion = 10883.058914 eV Total energy + Delta-G solvation = -2133.267606 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.18713 -35.28341 -32.71926 -32.41649 -30.11879 -26.41561 -25.32196 -23.50095 -21.82940 -20.88743 -19.42457 -16.43470 -15.73094 -15.19322 -14.89845 -14.79819 -14.09124 -13.69625 -13.02086 -12.86663 -12.48400 -12.20381 -11.99920 -11.41723 -11.10486 -11.03549 -10.78828 -10.68006 -10.52664 -10.38734 -10.12481 -9.79167 -9.18071 -8.51178 -8.34256 -7.28698 -6.04245 -4.06533 3.32518 3.36386 3.39498 4.41462 4.47397 4.79776 5.01041 5.13977 5.29226 5.31772 5.33086 5.42780 5.69568 5.77036 5.85639 5.93881 6.04017 6.10111 6.20885 6.27429 6.40487 6.58883 6.68281 7.15200 7.25442 7.42412 7.48752 7.77334 8.12054 8.37429 8.60615 9.02546 9.58483 11.06714 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.067855 B = 0.007292 C = 0.007065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.544200 B = 3838.753194 C = 3962.231915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.061 0.939 9 C 0.194 3.806 10 N -0.685 5.685 11 C 0.084 3.916 12 H 0.065 0.935 13 C -0.108 4.108 14 C -0.153 4.153 15 C 0.052 3.948 16 N -0.676 5.676 17 C 0.059 3.941 18 C -0.179 4.179 19 H 0.262 0.738 20 H 0.025 0.975 21 H -0.013 1.013 22 H 0.327 0.673 23 H 0.054 0.946 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.343 0.657 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.178 -12.793 0.636 12.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.079 0.921 9 C 0.067 3.933 10 N -0.314 5.314 11 C -0.027 4.027 12 H 0.083 0.917 13 C -0.146 4.146 14 C -0.192 4.192 15 C -0.077 4.077 16 N -0.305 5.305 17 C -0.072 4.072 18 C -0.220 4.220 19 H 0.072 0.928 20 H 0.043 0.957 21 H 0.005 0.995 22 H 0.144 0.856 23 H 0.073 0.927 24 H 0.097 0.903 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.162 0.838 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.899 -13.232 0.270 13.370 hybrid contribution 0.491 1.818 0.550 1.962 sum 2.390 -11.414 0.820 11.690 Atomic orbital electron populations 1.69953 1.06080 1.26906 1.50781 1.24989 0.94883 0.99365 0.95305 0.86542 0.79431 0.82668 0.78646 1.20151 1.21303 1.20277 1.21164 0.93463 0.90368 1.50528 0.92096 1.19568 0.90643 0.87435 0.95622 1.61000 1.20643 1.01109 1.48619 1.21408 0.96395 0.91328 0.93579 0.91722 1.21473 0.98138 0.95492 0.99531 1.21256 1.00131 0.98541 0.99297 1.20972 0.95258 0.96778 0.94711 1.61127 1.25165 1.33962 1.10224 1.21817 0.97139 0.93618 0.94667 1.23409 1.02187 0.97292 0.99122 0.92846 0.95651 0.99537 0.85585 0.92715 0.90338 0.91653 0.91800 0.91760 0.91517 0.83832 0.91685 0.92153 0.91886 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.80 9.32 -34.44 -0.32 -15.13 16 8 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 9 C 0.19 5.11 5.22 -4.98 -0.03 5.09 16 10 N -0.68 -14.67 6.05 -108.62 -0.66 -15.32 16 11 C 0.08 1.46 1.96 -68.30 -0.13 1.32 16 12 H 0.06 1.21 6.42 -51.93 -0.33 0.88 16 13 C -0.11 -1.58 5.27 -27.21 -0.14 -1.72 16 14 C -0.15 -1.88 5.36 -29.32 -0.16 -2.04 16 15 C 0.05 0.60 5.87 -6.71 -0.04 0.56 16 16 N -0.68 -8.85 6.91 -118.15 -0.82 -9.67 16 17 C 0.06 0.78 6.01 -4.67 -0.03 0.75 16 18 C -0.18 -2.82 5.13 -25.50 -0.13 -2.95 16 19 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 20 H 0.03 0.73 8.04 -51.93 -0.42 0.31 16 21 H -0.01 -0.37 7.54 -51.93 -0.39 -0.76 16 22 H 0.33 6.78 8.24 -39.29 -0.32 6.46 16 23 H 0.05 0.75 7.15 -51.93 -0.37 0.37 16 24 H 0.08 1.25 7.96 -51.93 -0.41 0.83 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.84 7.59 -51.93 -0.39 0.45 16 27 H 0.06 0.71 7.24 -51.93 -0.38 0.34 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.34 4.72 7.35 -39.29 -0.29 4.43 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.75 6.51 -51.93 -0.34 0.41 16 32 H 0.06 0.99 7.74 -51.93 -0.40 0.59 16 33 H 0.06 1.13 7.76 -51.93 -0.40 0.73 16 LS Contribution 256.78 15.07 3.87 3.87 Total: -1.00 -29.41 256.78 -8.23 -37.64 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.27 Total: 5.54 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -1.08 Total: -12.60 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.74 Total: -51.29 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.41 -8.23 -37.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157402105.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.289 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds