Wall clock time and date at job start Mon Mar 30 2020 02:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99721 * 2 1 4 4 H 1.48500 * 109.47276 * 239.99824 * 3 2 1 5 5 H 1.48495 * 109.47449 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46712 * 120.00303 * 3 2 1 7 7 C 1.37867 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00217 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47334 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99955 * 179.97438 * 10 9 7 12 12 H 1.08996 * 108.73857 * 36.69561 * 11 10 9 13 13 C 1.50463 * 108.76848 * 155.00001 * 11 10 9 14 14 C 1.54509 * 108.85320 * 213.07231 * 13 11 10 15 15 C 1.45860 * 111.58985 * 282.80702 * 14 13 11 16 16 N 1.47804 * 112.91919 * 61.32749 * 15 14 13 17 17 C 1.44273 * 109.46167 * 276.74124 * 16 15 14 18 18 C 1.54067 * 111.98335 * 96.43648 * 17 16 15 19 19 H 0.97006 * 119.99899 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.47173 * 60.00072 * 9 7 2 21 21 H 1.08999 * 109.47132 * 299.99842 * 9 7 2 22 22 H 1.00896 * 111.00015 * 56.04354 * 10 9 7 23 23 H 1.08999 * 109.57315 * 93.25746 * 13 11 10 24 24 H 1.08999 * 109.57326 * 332.88154 * 13 11 10 25 25 H 1.08998 * 109.05718 * 162.26495 * 14 13 11 26 26 H 1.08996 * 109.05889 * 43.34954 * 14 13 11 27 27 H 1.08999 * 108.79588 * 300.44041 * 15 14 13 28 28 H 1.08998 * 108.70768 * 182.15206 * 15 14 13 29 29 H 1.00901 * 110.99862 * 39.61043 * 16 15 14 30 30 H 1.09003 * 108.97821 * 217.07832 * 17 16 15 31 31 H 1.08996 * 108.97966 * 335.78928 * 17 16 15 32 32 H 1.09003 * 108.91734 * 198.19551 * 18 17 16 33 33 H 1.08997 * 108.84678 * 79.58612 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9070 0.0001 12 1 0.6106 -4.8204 -0.6164 13 6 2.4093 -5.9482 -0.6020 14 6 1.5455 -6.9827 -1.3577 15 6 0.8985 -7.9142 -0.4405 16 7 -0.0208 -7.2463 0.5047 17 6 0.7310 -6.7303 1.6228 18 6 1.0792 -5.2401 1.4451 19 1 -0.4850 0.8401 0.0004 20 1 0.6240 -2.5566 -0.8903 21 1 0.6247 -2.5570 0.8897 22 1 2.8405 -3.5486 0.7808 23 1 2.9686 -6.4477 0.1891 24 1 3.1015 -5.4730 -1.2971 25 1 2.1802 -7.5425 -2.0445 26 1 0.7806 -6.4576 -1.9299 27 1 1.6669 -8.4381 0.1279 28 1 0.3348 -8.6432 -1.0226 29 1 -0.5386 -6.5111 0.0470 30 1 0.1417 -6.8506 2.5319 31 1 1.6544 -7.3007 1.7226 32 1 1.8948 -4.9846 2.1217 33 1 0.2058 -4.6412 1.7029 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157402105.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:36 Heat of formation + Delta-G solvation = -33.541356 kcal Electronic energy + Delta-G solvation = -13017.288683 eV Core-core repulsion = 10883.058914 eV Total energy + Delta-G solvation = -2134.229769 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.39841 -36.90218 -34.73651 -33.54280 -31.75874 -28.28788 -26.57482 -24.92292 -23.65406 -22.07255 -20.80578 -18.55127 -16.92556 -16.78343 -16.37889 -16.00204 -15.70678 -15.22377 -14.50902 -14.33553 -13.93027 -13.64757 -13.48232 -13.23210 -12.75662 -12.68081 -12.30818 -12.16026 -11.87277 -11.85483 -11.57059 -11.33053 -11.15659 -10.69078 -9.45567 -9.06681 -8.25337 -6.37454 1.38898 1.42629 1.50824 2.37615 3.07544 3.41617 3.54405 3.67119 3.87128 4.15760 4.21727 4.24205 4.44202 4.60851 4.67291 4.75816 4.92440 5.01647 5.06576 5.08504 5.13192 5.15316 5.26093 5.39151 5.45898 5.60752 5.99969 6.14529 6.38704 6.42230 6.70251 6.86316 7.33902 8.85899 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.067855 B = 0.007292 C = 0.007065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.544200 B = 3838.753194 C = 3962.231915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.974 3.026 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.212 3.788 10 N -0.685 5.685 11 C 0.086 3.914 12 H 0.044 0.956 13 C -0.102 4.102 14 C -0.145 4.145 15 C 0.052 3.948 16 N -0.681 5.681 17 C 0.068 3.932 18 C -0.171 4.171 19 H 0.266 0.734 20 H -0.007 1.007 21 H -0.039 1.039 22 H 0.333 0.667 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.337 0.663 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.488 -13.637 0.755 14.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.082 0.918 9 C 0.084 3.916 10 N -0.314 5.314 11 C -0.024 4.024 12 H 0.062 0.938 13 C -0.140 4.140 14 C -0.184 4.184 15 C -0.077 4.077 16 N -0.309 5.309 17 C -0.063 4.063 18 C -0.212 4.212 19 H 0.074 0.926 20 H 0.011 0.989 21 H -0.021 1.021 22 H 0.150 0.850 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.106 0.894 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.154 0.846 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.220 -14.112 0.391 14.479 hybrid contribution 0.055 2.029 0.499 2.090 sum 3.275 -12.083 0.890 12.550 Atomic orbital electron populations 1.70089 1.07856 1.28122 1.51323 1.25981 0.95810 1.03488 0.94454 0.85365 0.78110 0.77503 0.79196 1.19291 1.20674 1.19025 1.21550 0.93814 0.91598 1.50932 0.91799 1.19161 0.90610 0.89001 0.92804 1.60909 1.20010 1.01536 1.48984 1.21516 0.96078 0.90222 0.94623 0.93783 1.21394 0.97704 0.95093 0.99789 1.21197 0.99751 0.98018 0.99425 1.21053 0.95490 0.96590 0.94577 1.61167 1.25551 1.33565 1.10648 1.21776 0.98067 0.91429 0.95065 1.23303 1.00980 0.99201 0.97707 0.92571 0.98889 1.02118 0.84971 0.90981 0.91625 0.89379 0.93149 0.90320 0.90004 0.84556 0.91146 0.90345 0.91663 0.94528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.33 13.29 21.44 0.28 -57.05 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.54 -31.50 9.32 25.60 0.24 -31.26 16 8 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 9 C 0.21 11.64 5.22 85.56 0.45 12.09 16 10 N -0.69 -29.92 6.05 -497.58 -3.01 -32.93 16 11 C 0.09 3.01 1.96 44.53 0.09 3.10 16 12 H 0.04 1.72 6.42 -2.39 -0.02 1.70 16 13 C -0.10 -2.82 5.27 30.29 0.16 -2.66 16 14 C -0.14 -3.25 5.36 28.92 0.15 -3.10 16 15 C 0.05 1.05 5.87 83.94 0.49 1.54 16 16 N -0.68 -16.72 6.91 -527.70 -3.65 -20.36 16 17 C 0.07 1.68 6.01 87.15 0.52 2.20 16 18 C -0.17 -5.38 5.13 31.39 0.16 -5.22 16 19 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 20 H -0.01 -0.42 8.04 -2.39 -0.02 -0.44 16 21 H -0.04 -2.29 7.54 -2.39 -0.02 -2.30 16 22 H 0.33 13.87 8.24 -89.70 -0.74 13.13 16 23 H 0.07 1.76 7.15 -2.39 -0.02 1.74 16 24 H 0.07 2.01 7.96 -2.39 -0.02 1.99 16 25 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.05 1.28 7.59 -2.39 -0.02 1.26 16 27 H 0.08 1.42 7.24 -2.39 -0.02 1.41 16 28 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.34 9.15 7.35 -89.69 -0.66 8.49 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.08 1.69 6.51 -2.39 -0.02 1.68 16 32 H 0.06 2.01 7.74 -2.39 -0.02 1.99 16 33 H 0.04 1.33 7.76 -2.39 -0.02 1.31 16 Total: -1.00 -63.63 256.78 -1.93 -65.56 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -0.31 Total: 20.81 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 2.73 Total: -22.79 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -6.37 Total: -110.35 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -63.63 -1.93 -65.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157402105.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.015 kcal (2) G-P(sol) polarization free energy of solvation -63.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds