Wall clock time and date at job start Mon Mar 30 2020 02:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46797 * 2 1 4 4 O 1.42898 * 109.46831 * 239.99933 * 2 1 3 5 5 C 1.52996 * 109.47057 * 120.00238 * 2 1 3 6 6 C 1.53004 * 109.47049 * 185.00014 * 5 2 1 7 7 H 1.09010 * 115.55763 * 330.70036 * 6 5 2 8 8 C 1.52998 * 117.50015 * 116.38510 * 6 5 2 9 9 H 1.08999 * 117.51699 * 214.96888 * 8 6 5 10 10 C 1.50700 * 117.49909 * 0.02562 * 8 6 5 11 11 H 1.07998 * 120.00437 * 93.43935 * 10 8 6 12 12 C 1.37879 * 119.99565 * 273.70993 * 10 8 6 13 13 N 1.31515 * 120.00259 * 359.73057 * 12 10 8 14 14 Si 1.86797 * 119.99676 * 179.72344 * 12 10 8 15 15 H 1.48503 * 109.47246 * 60.00647 * 14 12 10 16 16 H 1.48507 * 109.47038 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47445 * 300.00254 * 14 12 10 18 18 C 1.52995 * 117.50261 * 185.01428 * 6 5 2 19 19 C 1.52990 * 117.50353 * 145.01895 * 18 6 5 20 20 C 1.53003 * 117.51417 * 359.97438 * 18 6 5 21 21 H 1.08999 * 109.46791 * 299.99822 * 1 2 3 22 22 H 1.08997 * 109.47299 * 59.99729 * 1 2 3 23 23 H 1.09001 * 109.46797 * 180.02562 * 1 2 3 24 24 H 0.96698 * 114.00527 * 300.00104 * 4 2 1 25 25 H 1.08993 * 109.47510 * 64.99709 * 5 2 1 26 26 H 1.09001 * 109.47083 * 304.99647 * 5 2 1 27 27 H 0.96996 * 119.99875 * 180.02562 * 13 12 10 28 28 H 1.09001 * 109.47366 * 180.02562 * 19 18 6 29 29 H 1.09009 * 109.47349 * 300.01509 * 19 18 6 30 30 H 1.09000 * 109.47182 * 60.01299 * 19 18 6 31 31 H 1.09001 * 109.47612 * 345.45230 * 20 18 6 32 32 H 1.09003 * 109.47197 * 105.45838 * 20 18 6 33 33 H 1.09007 * 109.46928 * 225.45005 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0401 -0.7213 1.2492 6 6 3.5649 -0.6133 1.3136 7 1 4.0721 -0.5381 0.3517 8 6 4.1698 0.1511 2.4929 9 1 5.0751 0.7291 2.3072 10 6 3.2182 0.7395 3.5024 11 1 2.9560 0.1796 4.3879 12 6 2.6777 1.9906 3.2927 13 7 2.9969 2.6725 2.2144 14 14 1.4921 2.7168 4.5402 15 1 2.1694 2.8347 5.8565 16 1 1.0568 4.0616 4.0848 17 1 0.3072 1.8314 4.6707 18 6 4.2804 -1.3738 2.4319 19 6 5.6530 -1.9704 2.1146 20 6 3.4166 -2.1837 3.4008 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.7210 -1.5952 -1.2330 25 1 1.7517 -1.7715 1.2056 26 1 1.6055 -0.2618 2.1369 27 1 2.6170 3.5527 2.0671 28 1 6.0406 -2.4797 2.9969 29 1 5.5587 -2.6837 1.2956 30 1 6.3376 -1.1732 1.8250 31 1 2.3734 -1.8866 3.2931 32 1 3.5170 -3.2457 3.1764 33 1 3.7441 -1.9960 4.4234 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167022959.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:13 Heat of formation + Delta-G solvation = -72.293076 kcal Electronic energy + Delta-G solvation = -13386.009454 eV Core-core repulsion = 11217.806533 eV Total energy + Delta-G solvation = -2168.202921 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.83502 -37.91062 -34.32196 -32.56986 -30.18165 -28.42039 -28.26663 -26.27265 -22.66053 -21.16708 -19.20975 -18.04778 -16.97397 -16.55200 -16.48629 -15.67699 -14.97019 -14.64601 -14.17054 -13.83754 -13.63167 -13.26872 -13.08785 -12.85485 -12.74160 -12.67841 -12.45858 -12.34708 -12.17118 -11.80099 -11.30275 -11.17988 -10.85643 -10.61473 -9.84645 -9.66678 -8.06426 -6.13380 1.42508 1.43887 1.50580 2.44688 3.15451 3.43811 3.65625 4.07509 4.26460 4.38856 4.40405 4.45985 4.57252 4.73473 4.88183 4.89631 4.97949 5.03313 5.10747 5.15778 5.27043 5.31446 5.39567 5.50047 5.53321 5.61125 5.73980 5.88543 5.98801 6.46797 6.91690 7.01608 7.50792 9.03399 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.023044 B = 0.016779 C = 0.011613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.769083 B = 1668.368822 C = 2410.564918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.109 3.891 3 H 0.064 0.936 4 O -0.579 6.579 5 C -0.089 4.089 6 C -0.145 4.145 7 H 0.061 0.939 8 C 0.003 3.997 9 H 0.017 0.983 10 C -0.493 4.493 11 H 0.058 0.942 12 C 0.026 3.974 13 N -0.912 5.912 14 Si 0.940 3.060 15 H -0.274 1.274 16 H -0.288 1.288 17 H -0.266 1.266 18 C -0.149 4.149 19 C -0.103 4.103 20 C -0.092 4.092 21 H 0.055 0.945 22 H 0.061 0.939 23 H 0.077 0.923 24 H 0.382 0.618 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.258 0.742 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.036 0.964 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.686 -8.463 -1.535 9.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.050 3.950 3 H 0.082 0.918 4 O -0.386 6.386 5 C -0.126 4.126 6 C -0.164 4.164 7 H 0.080 0.920 8 C -0.016 4.016 9 H 0.035 0.965 10 C -0.531 4.531 11 H 0.076 0.924 12 C -0.173 4.173 13 N -0.550 5.550 14 Si 0.766 3.234 15 H -0.199 1.199 16 H -0.214 1.214 17 H -0.191 1.191 18 C -0.149 4.149 19 C -0.160 4.160 20 C -0.149 4.149 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.096 0.904 24 H 0.231 0.769 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.452 -7.711 -1.730 8.623 hybrid contribution -0.538 0.533 0.603 0.968 sum -3.990 -7.178 -1.127 8.289 Atomic orbital electron populations 1.22368 0.95276 1.03145 1.02041 1.21720 0.93223 0.95718 0.84337 0.91799 1.86530 1.77983 1.29668 1.44425 1.21509 0.94052 0.98841 0.98210 1.22187 0.94721 1.07321 0.92154 0.92049 1.19899 0.96238 0.88635 0.96806 0.96462 1.20684 1.25672 1.01165 1.05572 0.92381 1.25617 0.97925 0.97223 0.96578 1.70118 1.44676 1.12567 1.27656 0.85897 0.80053 0.77665 0.79823 1.19924 1.21415 1.19061 1.21802 0.97161 0.94980 1.00967 1.21234 0.93870 0.99621 1.01280 1.21077 0.98758 0.97897 0.97147 0.92633 0.91949 0.90381 0.76925 0.91817 0.91546 0.93335 0.91579 0.91938 0.94474 0.93048 0.91868 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.32 9.54 71.99 0.69 -4.63 16 2 C 0.11 4.22 3.57 30.60 0.11 4.33 16 3 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 4 O -0.58 -20.63 12.85 -148.98 -1.91 -22.54 16 5 C -0.09 -3.60 3.55 30.59 0.11 -3.49 16 6 C -0.14 -6.56 5.34 -10.79 -0.06 -6.62 16 7 H 0.06 2.93 7.75 -2.38 -0.02 2.92 16 8 C 0.00 0.13 5.11 -11.54 -0.06 0.07 16 9 H 0.02 1.00 8.05 -2.39 -0.02 0.98 16 10 C -0.49 -26.46 6.62 25.60 0.17 -26.29 16 11 H 0.06 3.05 7.05 -2.91 -0.02 3.03 16 12 C 0.03 1.43 5.33 84.66 0.45 1.88 16 13 N -0.91 -52.70 13.29 21.45 0.28 -52.42 16 14 Si 0.94 42.64 29.54 68.60 2.03 44.67 16 15 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 16 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 18 C -0.15 -6.14 2.70 -52.18 -0.14 -6.28 16 19 C -0.10 -3.58 9.84 71.98 0.71 -2.87 16 20 C -0.09 -3.33 8.24 71.98 0.59 -2.74 16 21 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.38 9.81 9.05 -74.06 -0.67 9.14 16 25 H 0.06 2.20 7.86 -2.39 -0.02 2.19 16 26 H 0.07 3.06 5.87 -2.39 -0.01 3.04 16 27 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 28 H 0.07 2.02 8.09 -2.39 -0.02 2.00 16 29 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.04 1.35 7.90 -2.39 -0.02 1.33 16 31 H 0.05 1.94 5.98 -2.39 -0.01 1.92 16 32 H 0.06 1.89 8.13 -2.39 -0.02 1.87 16 33 H 0.04 1.62 8.02 -2.38 -0.02 1.60 16 Total: -1.00 -60.87 269.59 3.37 -57.50 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.40 Total: 19.43 kcal Atomic # 6 Polarization: -49.21 SS G_CDS: 2.57 Total: -46.64 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: 0.28 Total: -52.42 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -1.91 Total: -22.54 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -60.87 3.37 -57.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167022959.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.794 kcal (2) G-P(sol) polarization free energy of solvation -60.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds