Wall clock time and date at job start Mon Mar 30 2020 02:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46948 * 2 1 4 4 O 1.42892 * 109.46909 * 120.00208 * 2 1 3 5 5 C 1.53004 * 109.47094 * 240.00054 * 2 1 3 6 6 C 1.52997 * 109.46925 * 175.00429 * 5 2 1 7 7 H 1.08998 * 115.54896 * 330.57658 * 6 5 2 8 8 C 1.52998 * 117.52050 * 116.28548 * 6 5 2 9 9 H 1.09008 * 117.49753 * 214.96897 * 8 6 5 10 10 C 1.50696 * 117.49651 * 359.97438 * 8 6 5 11 11 H 1.08001 * 120.00282 * 55.74802 * 10 8 6 12 12 C 1.37880 * 119.99941 * 235.74362 * 10 8 6 13 13 N 1.31513 * 120.00236 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99949 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47120 * 59.99794 * 14 12 10 16 16 H 1.48500 * 109.47120 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46951 * 299.99884 * 14 12 10 18 18 C 1.52997 * 117.49525 * 184.91455 * 6 5 2 19 19 C 1.53000 * 117.50300 * 359.96830 * 18 6 5 20 20 C 1.53002 * 117.49899 * 144.97236 * 18 6 5 21 21 H 1.09004 * 109.47117 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47221 * 299.99997 * 1 2 3 23 23 H 1.09002 * 109.47111 * 60.00349 * 1 2 3 24 24 H 0.96697 * 114.00522 * 59.99983 * 4 2 1 25 25 H 1.09000 * 109.47096 * 55.00176 * 5 2 1 26 26 H 1.09004 * 109.46585 * 295.00013 * 5 2 1 27 27 H 0.96996 * 119.99829 * 179.97438 * 13 12 10 28 28 H 1.09002 * 109.46746 * 66.87393 * 19 18 6 29 29 H 1.09000 * 109.47136 * 186.86897 * 19 18 6 30 30 H 1.08997 * 109.47095 * 306.87895 * 19 18 6 31 31 H 1.09001 * 109.47483 * 59.99741 * 20 18 6 32 32 H 1.09003 * 109.47444 * 179.97438 * 20 18 6 33 33 H 1.09003 * 109.47053 * 299.99863 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7213 -1.2493 6 6 3.5648 -0.6134 -1.3136 7 1 3.9926 0.2792 -0.8571 8 6 4.3700 -1.9108 -1.2183 9 1 5.3276 -1.8719 -0.6989 10 6 3.6005 -3.1977 -1.0675 11 1 2.8450 -3.4632 -1.7921 12 6 3.8611 -4.0363 -0.0045 13 7 4.7808 -3.7128 0.8782 14 14 2.9077 -5.6318 0.1820 15 1 3.1330 -6.4855 -1.0120 16 1 3.3727 -6.3471 1.3975 17 1 1.4590 -5.3309 0.3092 18 6 4.2609 -1.1747 -2.5551 19 6 3.3790 -1.8016 -3.6368 20 6 5.5040 -0.4400 -3.0610 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.7210 -1.5952 1.2329 25 1 1.6054 -0.2617 -2.1370 26 1 1.7516 -1.7715 -1.2055 27 1 4.9638 -4.3026 1.6262 28 1 2.7636 -1.0285 -4.0970 29 1 4.0092 -2.2643 -4.3964 30 1 2.7359 -2.5585 -3.1878 31 1 6.2656 -0.4350 -2.2812 32 1 5.8920 -0.9477 -3.9440 33 1 5.2402 0.5860 -3.3178 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167023053.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:15 Heat of formation + Delta-G solvation = -51.831603 kcal Electronic energy + Delta-G solvation = -13333.171003 eV Core-core repulsion = 11165.855358 eV Total energy + Delta-G solvation = -2167.315645 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.10977 -36.19788 -32.36071 -31.06474 -28.64841 -26.84322 -26.48114 -24.51190 -21.04968 -19.35070 -17.53318 -16.26255 -15.30411 -14.98728 -14.54936 -13.87331 -13.33823 -13.07285 -12.73851 -12.13905 -12.06004 -11.73255 -11.54800 -11.29713 -11.02874 -10.91372 -10.83242 -10.65296 -10.29282 -10.06735 -9.77727 -9.25735 -9.07157 -8.83085 -8.03879 -7.90570 -6.04895 -4.01246 3.26977 3.34406 3.35510 4.38115 4.90099 5.13425 5.38542 5.55419 5.63513 5.81342 5.97418 6.01786 6.12421 6.21103 6.33048 6.37857 6.43004 6.52075 6.60232 6.70390 6.82543 6.87670 6.97549 7.06562 7.21148 7.24519 7.59647 7.71545 7.93719 8.49541 8.53791 9.00149 9.55147 11.04905 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.022387 B = 0.016297 C = 0.011591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.437537 B = 1717.728659 C = 2415.129792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.107 3.893 3 H 0.081 0.919 4 O -0.555 6.555 5 C -0.106 4.106 6 C -0.170 4.170 7 H 0.070 0.930 8 C 0.050 3.950 9 H 0.079 0.921 10 C -0.486 4.486 11 H 0.061 0.939 12 C 0.070 3.930 13 N -0.879 5.879 14 Si 0.887 3.113 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.179 4.179 19 C -0.101 4.101 20 C -0.102 4.102 21 H 0.056 0.944 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.376 0.624 25 H 0.044 0.956 26 H 0.082 0.918 27 H 0.262 0.738 28 H 0.030 0.970 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.290 4.349 -3.628 7.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.048 3.952 3 H 0.099 0.901 4 O -0.361 6.361 5 C -0.144 4.144 6 C -0.189 4.189 7 H 0.089 0.911 8 C 0.032 3.968 9 H 0.097 0.903 10 C -0.523 4.523 11 H 0.079 0.921 12 C -0.133 4.133 13 N -0.515 5.515 14 Si 0.715 3.285 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.180 4.180 19 C -0.158 4.158 20 C -0.159 4.159 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.224 0.776 25 H 0.063 0.937 26 H 0.101 0.899 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.916 4.855 -3.333 7.671 hybrid contribution -0.760 -1.230 -0.070 1.447 sum -5.676 3.626 -3.402 7.546 Atomic orbital electron populations 1.22541 0.98125 1.02052 1.01430 1.21780 0.90987 0.96147 0.86292 0.90064 1.86498 1.77676 1.29014 1.42893 1.21682 0.95300 1.01873 0.95523 1.22329 0.93331 1.01332 1.01934 0.91128 1.20147 0.96986 0.89469 0.90220 0.90265 1.20587 1.19815 1.03039 1.08882 0.92068 1.25012 0.94937 0.97597 0.95799 1.69948 1.31302 1.37182 1.13103 0.86749 0.80321 0.83883 0.77560 1.20229 1.21262 1.20167 1.21675 0.98065 1.07023 0.91223 1.21174 0.98611 0.99214 0.96757 1.21209 0.96673 0.98167 0.99883 0.92528 0.92765 0.92393 0.77621 0.93712 0.89937 0.92783 0.95136 0.94234 0.91326 0.93364 0.93656 0.94410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 9.53 37.16 0.35 -2.33 16 2 C 0.11 1.92 3.54 -26.73 -0.09 1.83 16 3 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 4 O -0.56 -11.54 13.10 -35.23 -0.46 -12.00 16 5 C -0.11 -2.08 4.02 -26.73 -0.11 -2.18 16 6 C -0.17 -3.74 5.23 -90.62 -0.47 -4.22 16 7 H 0.07 1.58 8.08 -51.93 -0.42 1.16 16 8 C 0.05 1.26 5.38 -91.78 -0.49 0.77 16 9 H 0.08 2.23 7.51 -51.92 -0.39 1.84 16 10 C -0.49 -12.71 6.99 -34.44 -0.24 -12.96 16 11 H 0.06 1.56 5.29 -52.49 -0.28 1.29 16 12 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 13 N -0.88 -25.04 12.95 55.43 0.72 -24.32 16 14 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 16 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 C -0.18 -3.83 2.70 -154.51 -0.42 -4.25 16 19 C -0.10 -1.98 8.60 37.16 0.32 -1.66 16 20 C -0.10 -1.92 9.85 37.16 0.37 -1.56 16 21 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.38 7.42 9.05 45.56 0.41 7.83 16 25 H 0.04 0.80 8.03 -51.93 -0.42 0.38 16 26 H 0.08 1.75 5.93 -51.93 -0.31 1.45 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.73 8.04 -51.93 -0.42 0.31 16 30 H 0.07 1.43 5.17 -51.93 -0.27 1.16 16 31 H 0.05 0.92 7.90 -51.93 -0.41 0.51 16 32 H 0.04 0.79 8.01 -51.93 -0.42 0.37 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 268.38 15.07 4.04 4.04 Total: -1.00 -27.96 268.38 -6.19 -34.14 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -4.58 Total: 7.49 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: -0.89 Total: -24.77 kcal Atomic # 7 Polarization: -25.04 SS G_CDS: 0.72 Total: -24.32 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.46 Total: -12.00 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.96 -6.19 -34.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167023053.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.688 kcal (2) G-P(sol) polarization free energy of solvation -27.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds